Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14800

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS14795 and DZA65_RS14800 are separated by 119 nucleotidesDZA65_RS14800 and DZA65_RS14805 are separated by 403 nucleotides DZA65_RS14795: DZA65_RS14795 - multidrug effflux MFS transporter, at 3,223,959 to 3,225,161 _RS14795 DZA65_RS14800: DZA65_RS14800 - alpha/beta hydrolase, at 3,225,281 to 3,226,264 _RS14800 DZA65_RS14805: DZA65_RS14805 - formate dehydrogenase accessory protein FdhE, at 3,226,668 to 3,227,594 _RS14805 Position (kb) 3225 3226 3227Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3224.312 kb on - strand, within DZA65_RS14795at 3224.340 kb on + strand, within DZA65_RS14795at 3224.340 kb on + strand, within DZA65_RS14795at 3224.340 kb on + strand, within DZA65_RS14795at 3224.340 kb on + strand, within DZA65_RS14795at 3224.341 kb on - strand, within DZA65_RS14795at 3224.341 kb on - strand, within DZA65_RS14795at 3224.606 kb on + strand, within DZA65_RS14795at 3224.606 kb on + strand, within DZA65_RS14795at 3224.607 kb on - strand, within DZA65_RS14795at 3224.607 kb on - strand, within DZA65_RS14795at 3224.607 kb on - strand, within DZA65_RS14795at 3224.607 kb on - strand, within DZA65_RS14795at 3224.607 kb on - strand, within DZA65_RS14795at 3224.656 kb on - strand, within DZA65_RS14795at 3224.656 kb on - strand, within DZA65_RS14795at 3224.692 kb on - strand, within DZA65_RS14795at 3224.699 kb on + strand, within DZA65_RS14795at 3224.699 kb on + strand, within DZA65_RS14795at 3224.819 kb on + strand, within DZA65_RS14795at 3225.016 kb on + strand, within DZA65_RS14795at 3225.017 kb on - strand, within DZA65_RS14795at 3225.017 kb on - strand, within DZA65_RS14795at 3225.099 kb on + strandat 3225.099 kb on + strandat 3225.099 kb on + strandat 3225.099 kb on + strandat 3225.099 kb on + strandat 3225.100 kb on - strandat 3225.100 kb on - strandat 3225.100 kb on - strandat 3225.100 kb on - strandat 3225.100 kb on - strandat 3225.120 kb on + strandat 3225.130 kb on + strandat 3225.131 kb on - strandat 3225.131 kb on - strandat 3225.282 kb on + strandat 3225.282 kb on + strandat 3225.283 kb on - strandat 3225.283 kb on - strandat 3225.283 kb on - strandat 3225.283 kb on - strandat 3225.283 kb on - strandat 3225.283 kb on - strandat 3225.283 kb on - strandat 3225.383 kb on - strand, within DZA65_RS14800at 3225.400 kb on + strand, within DZA65_RS14800at 3225.400 kb on + strand, within DZA65_RS14800at 3225.400 kb on + strand, within DZA65_RS14800at 3225.401 kb on - strand, within DZA65_RS14800at 3225.404 kb on - strand, within DZA65_RS14800at 3225.404 kb on - strand, within DZA65_RS14800at 3225.435 kb on + strand, within DZA65_RS14800at 3225.435 kb on + strand, within DZA65_RS14800at 3225.436 kb on - strand, within DZA65_RS14800at 3225.436 kb on - strand, within DZA65_RS14800at 3225.436 kb on - strand, within DZA65_RS14800at 3225.436 kb on - strand, within DZA65_RS14800at 3225.436 kb on - strand, within DZA65_RS14800at 3225.436 kb on - strand, within DZA65_RS14800at 3225.471 kb on + strand, within DZA65_RS14800at 3225.471 kb on + strand, within DZA65_RS14800at 3225.471 kb on + strand, within DZA65_RS14800at 3225.472 kb on - strand, within DZA65_RS14800at 3225.472 kb on - strand, within DZA65_RS14800at 3225.472 kb on - strand, within DZA65_RS14800at 3225.472 kb on - strand, within DZA65_RS14800at 3225.472 kb on - strand, within DZA65_RS14800at 3225.531 kb on + strand, within DZA65_RS14800at 3225.553 kb on + strand, within DZA65_RS14800at 3225.554 kb on - strand, within DZA65_RS14800at 3225.554 kb on - strand, within DZA65_RS14800at 3225.575 kb on - strand, within DZA65_RS14800at 3225.598 kb on + strand, within DZA65_RS14800at 3225.599 kb on - strand, within DZA65_RS14800at 3225.677 kb on + strand, within DZA65_RS14800at 3225.677 kb on + strand, within DZA65_RS14800at 3225.677 kb on + strand, within DZA65_RS14800at 3225.677 kb on + strand, within DZA65_RS14800at 3225.677 kb on + strand, within DZA65_RS14800at 3225.678 kb on - strand, within DZA65_RS14800at 3225.727 kb on + strand, within DZA65_RS14800at 3225.727 kb on + strand, within DZA65_RS14800at 3225.728 kb on - strand, within DZA65_RS14800at 3225.728 kb on - strand, within DZA65_RS14800at 3225.728 kb on - strand, within DZA65_RS14800at 3225.728 kb on - strand, within DZA65_RS14800at 3225.784 kb on + strand, within DZA65_RS14800at 3225.785 kb on - strand, within DZA65_RS14800at 3225.785 kb on - strand, within DZA65_RS14800at 3225.794 kb on - strand, within DZA65_RS14800at 3225.794 kb on - strand, within DZA65_RS14800at 3225.794 kb on - strand, within DZA65_RS14800at 3225.794 kb on - strand, within DZA65_RS14800at 3225.831 kb on + strand, within DZA65_RS14800at 3225.831 kb on + strand, within DZA65_RS14800at 3225.832 kb on - strand, within DZA65_RS14800at 3225.832 kb on - strand, within DZA65_RS14800at 3225.907 kb on - strand, within DZA65_RS14800at 3226.009 kb on + strand, within DZA65_RS14800at 3226.023 kb on + strand, within DZA65_RS14800at 3226.023 kb on + strand, within DZA65_RS14800at 3226.023 kb on + strand, within DZA65_RS14800at 3226.023 kb on + strand, within DZA65_RS14800at 3226.024 kb on - strand, within DZA65_RS14800at 3226.024 kb on - strand, within DZA65_RS14800at 3226.024 kb on - strand, within DZA65_RS14800at 3226.024 kb on - strand, within DZA65_RS14800at 3226.024 kb on - strand, within DZA65_RS14800at 3226.027 kb on + strand, within DZA65_RS14800at 3226.027 kb on + strand, within DZA65_RS14800at 3226.027 kb on + strand, within DZA65_RS14800at 3226.028 kb on - strand, within DZA65_RS14800at 3226.028 kb on - strand, within DZA65_RS14800at 3226.028 kb on - strand, within DZA65_RS14800at 3226.030 kb on + strand, within DZA65_RS14800at 3226.031 kb on - strand, within DZA65_RS14800at 3226.031 kb on - strand, within DZA65_RS14800at 3226.138 kb on + strand, within DZA65_RS14800at 3226.145 kb on - strand, within DZA65_RS14800at 3226.168 kb on + strandat 3226.227 kb on + strandat 3226.228 kb on - strandat 3226.241 kb on - strandat 3226.249 kb on + strandat 3226.252 kb on + strandat 3226.268 kb on - strandat 3226.281 kb on + strandat 3226.282 kb on - strandat 3226.371 kb on + strandat 3226.371 kb on + strandat 3226.371 kb on + strandat 3226.372 kb on - strandat 3226.372 kb on - strandat 3226.507 kb on + strandat 3226.536 kb on + strandat 3226.549 kb on - strandat 3226.554 kb on + strandat 3226.558 kb on + strandat 3226.558 kb on + strandat 3226.558 kb on + strandat 3226.595 kb on + strandat 3226.610 kb on + strandat 3226.610 kb on + strandat 3226.611 kb on - strandat 3226.669 kb on + strandat 3226.670 kb on - strandat 3226.801 kb on + strand, within DZA65_RS14805at 3226.801 kb on + strand, within DZA65_RS14805at 3226.801 kb on + strand, within DZA65_RS14805at 3226.802 kb on - strand, within DZA65_RS14805at 3226.802 kb on - strand, within DZA65_RS14805at 3226.816 kb on + strand, within DZA65_RS14805at 3226.817 kb on - strand, within DZA65_RS14805at 3226.817 kb on - strand, within DZA65_RS14805at 3226.817 kb on - strand, within DZA65_RS14805at 3226.817 kb on - strand, within DZA65_RS14805at 3226.880 kb on - strand, within DZA65_RS14805at 3226.907 kb on + strand, within DZA65_RS14805at 3226.907 kb on + strand, within DZA65_RS14805at 3226.908 kb on - strand, within DZA65_RS14805at 3226.908 kb on - strand, within DZA65_RS14805at 3226.908 kb on - strand, within DZA65_RS14805at 3226.928 kb on + strand, within DZA65_RS14805at 3226.928 kb on + strand, within DZA65_RS14805at 3226.928 kb on + strand, within DZA65_RS14805at 3226.928 kb on + strand, within DZA65_RS14805at 3226.928 kb on + strandat 3226.929 kb on - strand, within DZA65_RS14805at 3226.929 kb on - strand, within DZA65_RS14805at 3226.929 kb on - strand, within DZA65_RS14805at 3226.929 kb on - strand, within DZA65_RS14805at 3227.012 kb on + strand, within DZA65_RS14805at 3227.012 kb on + strand, within DZA65_RS14805at 3227.013 kb on - strand, within DZA65_RS14805at 3227.013 kb on - strand, within DZA65_RS14805at 3227.150 kb on + strand, within DZA65_RS14805at 3227.150 kb on + strand, within DZA65_RS14805

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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3,224,312 - DZA65_RS14795 0.29 -0.1
3,224,340 + DZA65_RS14795 0.32 -0.6
3,224,340 + DZA65_RS14795 0.32 +0.4
3,224,340 + DZA65_RS14795 0.32 +0.5
3,224,340 + DZA65_RS14795 0.32 +0.1
3,224,341 - DZA65_RS14795 0.32 +0.4
3,224,341 - DZA65_RS14795 0.32 -2.2
3,224,606 + DZA65_RS14795 0.54 -0.6
3,224,606 + DZA65_RS14795 0.54 -0.8
3,224,607 - DZA65_RS14795 0.54 -0.7
3,224,607 - DZA65_RS14795 0.54 -1.8
3,224,607 - DZA65_RS14795 0.54 +1.8
3,224,607 - DZA65_RS14795 0.54 -1.3
3,224,607 - DZA65_RS14795 0.54 -1.6
3,224,656 - DZA65_RS14795 0.58 -0.9
3,224,656 - DZA65_RS14795 0.58 +0.5
3,224,692 - DZA65_RS14795 0.61 -0.1
3,224,699 + DZA65_RS14795 0.62 -0.3
3,224,699 + DZA65_RS14795 0.62 -0.1
3,224,819 + DZA65_RS14795 0.71 -0.5
3,225,016 + DZA65_RS14795 0.88 -0.2
3,225,017 - DZA65_RS14795 0.88 +0.1
3,225,017 - DZA65_RS14795 0.88 +1.1
3,225,099 + +0.9
3,225,099 + +0.6
3,225,099 + +0.6
3,225,099 + -0.1
3,225,099 + -0.9
3,225,100 - +0.3
3,225,100 - -0.8
3,225,100 - +0.0
3,225,100 - +1.2
3,225,100 - -0.2
3,225,120 + -1.3
3,225,130 + -1.9
3,225,131 - +0.7
3,225,131 - -0.5
3,225,282 + -1.1
3,225,282 + -0.4
3,225,283 - +1.1
3,225,283 - +0.6
3,225,283 - +0.3
3,225,283 - +0.4
3,225,283 - -0.3
3,225,283 - -0.9
3,225,283 - -0.1
3,225,383 - DZA65_RS14800 0.10 +0.2
3,225,400 + DZA65_RS14800 0.12 -0.9
3,225,400 + DZA65_RS14800 0.12 -1.2
3,225,400 + DZA65_RS14800 0.12 -1.2
3,225,401 - DZA65_RS14800 0.12 +0.1
3,225,404 - DZA65_RS14800 0.12 +1.0
3,225,404 - DZA65_RS14800 0.12 +0.5
3,225,435 + DZA65_RS14800 0.16 +0.1
3,225,435 + DZA65_RS14800 0.16 +0.2
3,225,436 - DZA65_RS14800 0.16 -0.6
3,225,436 - DZA65_RS14800 0.16 +0.3
3,225,436 - DZA65_RS14800 0.16 +1.4
3,225,436 - DZA65_RS14800 0.16 -0.2
3,225,436 - DZA65_RS14800 0.16 +0.3
3,225,436 - DZA65_RS14800 0.16 -0.8
3,225,471 + DZA65_RS14800 0.19 -0.3
3,225,471 + DZA65_RS14800 0.19 +1.4
3,225,471 + DZA65_RS14800 0.19 +2.1
3,225,472 - DZA65_RS14800 0.19 +0.7
3,225,472 - DZA65_RS14800 0.19 -0.0
3,225,472 - DZA65_RS14800 0.19 -2.1
3,225,472 - DZA65_RS14800 0.19 -1.6
3,225,472 - DZA65_RS14800 0.19 -0.2
3,225,531 + DZA65_RS14800 0.25 +0.4
3,225,553 + DZA65_RS14800 0.28 -0.1
3,225,554 - DZA65_RS14800 0.28 +0.4
3,225,554 - DZA65_RS14800 0.28 +0.4
3,225,575 - DZA65_RS14800 0.30 -0.6
3,225,598 + DZA65_RS14800 0.32 -0.9
3,225,599 - DZA65_RS14800 0.32 +0.5
3,225,677 + DZA65_RS14800 0.40 -0.8
3,225,677 + DZA65_RS14800 0.40 -0.9
3,225,677 + DZA65_RS14800 0.40 -0.2
3,225,677 + DZA65_RS14800 0.40 +0.6
3,225,677 + DZA65_RS14800 0.40 -0.2
3,225,678 - DZA65_RS14800 0.40 -0.2
3,225,727 + DZA65_RS14800 0.45 -0.2
3,225,727 + DZA65_RS14800 0.45 +0.3
3,225,728 - DZA65_RS14800 0.45 -1.6
3,225,728 - DZA65_RS14800 0.45 -0.6
3,225,728 - DZA65_RS14800 0.45 +0.9
3,225,728 - DZA65_RS14800 0.45 +0.4
3,225,784 + DZA65_RS14800 0.51 +2.1
3,225,785 - DZA65_RS14800 0.51 +0.6
3,225,785 - DZA65_RS14800 0.51 -0.1
3,225,794 - DZA65_RS14800 0.52 +0.4
3,225,794 - DZA65_RS14800 0.52 +2.2
3,225,794 - DZA65_RS14800 0.52 -1.5
3,225,794 - DZA65_RS14800 0.52 -0.8
3,225,831 + DZA65_RS14800 0.56 +0.5
3,225,831 + DZA65_RS14800 0.56 -0.2
3,225,832 - DZA65_RS14800 0.56 +0.1
3,225,832 - DZA65_RS14800 0.56 -0.6
3,225,907 - DZA65_RS14800 0.64 -0.3
3,226,009 + DZA65_RS14800 0.74 +2.4
3,226,023 + DZA65_RS14800 0.75 +1.6
3,226,023 + DZA65_RS14800 0.75 -2.6
3,226,023 + DZA65_RS14800 0.75 +0.6
3,226,023 + DZA65_RS14800 0.75 -1.6
3,226,024 - DZA65_RS14800 0.76 -0.6
3,226,024 - DZA65_RS14800 0.76 +0.1
3,226,024 - DZA65_RS14800 0.76 -0.5
3,226,024 - DZA65_RS14800 0.76 -0.5
3,226,024 - DZA65_RS14800 0.76 -0.8
3,226,027 + DZA65_RS14800 0.76 +0.6
3,226,027 + DZA65_RS14800 0.76 +0.0
3,226,027 + DZA65_RS14800 0.76 +0.1
3,226,028 - DZA65_RS14800 0.76 -0.0
3,226,028 - DZA65_RS14800 0.76 -0.0
3,226,028 - DZA65_RS14800 0.76 -3.4
3,226,030 + DZA65_RS14800 0.76 +0.5
3,226,031 - DZA65_RS14800 0.76 -1.5
3,226,031 - DZA65_RS14800 0.76 +0.4
3,226,138 + DZA65_RS14800 0.87 +0.4
3,226,145 - DZA65_RS14800 0.88 +0.1
3,226,168 + -1.2
3,226,227 + +2.0
3,226,228 - -0.8
3,226,241 - -0.9
3,226,249 + +0.2
3,226,252 + -0.3
3,226,268 - -0.8
3,226,281 + +0.6
3,226,282 - +0.3
3,226,371 + -1.8
3,226,371 + -0.6
3,226,371 + -0.3
3,226,372 - -1.2
3,226,372 - +0.6
3,226,507 + -2.2
3,226,536 + -1.2
3,226,549 - -0.7
3,226,554 + -1.2
3,226,558 + -2.4
3,226,558 + -1.9
3,226,558 + -0.0
3,226,595 + +0.1
3,226,610 + -0.0
3,226,610 + +0.5
3,226,611 - +0.1
3,226,669 + +0.1
3,226,670 - +0.4
3,226,801 + DZA65_RS14805 0.14 -0.3
3,226,801 + DZA65_RS14805 0.14 -0.2
3,226,801 + DZA65_RS14805 0.14 -0.6
3,226,802 - DZA65_RS14805 0.14 +1.1
3,226,802 - DZA65_RS14805 0.14 -0.1
3,226,816 + DZA65_RS14805 0.16 -0.5
3,226,817 - DZA65_RS14805 0.16 +0.7
3,226,817 - DZA65_RS14805 0.16 -0.1
3,226,817 - DZA65_RS14805 0.16 +0.4
3,226,817 - DZA65_RS14805 0.16 -1.8
3,226,880 - DZA65_RS14805 0.23 -0.2
3,226,907 + DZA65_RS14805 0.26 -2.4
3,226,907 + DZA65_RS14805 0.26 +0.2
3,226,908 - DZA65_RS14805 0.26 -0.1
3,226,908 - DZA65_RS14805 0.26 -0.2
3,226,908 - DZA65_RS14805 0.26 -0.4
3,226,928 + DZA65_RS14805 0.28 -0.3
3,226,928 + DZA65_RS14805 0.28 -0.3
3,226,928 + DZA65_RS14805 0.28 +0.4
3,226,928 + DZA65_RS14805 0.28 +0.4
3,226,928 + +0.8
3,226,929 - DZA65_RS14805 0.28 -1.0
3,226,929 - DZA65_RS14805 0.28 -0.5
3,226,929 - DZA65_RS14805 0.28 -1.2
3,226,929 - DZA65_RS14805 0.28 -0.2
3,227,012 + DZA65_RS14805 0.37 +1.4
3,227,012 + DZA65_RS14805 0.37 +0.4
3,227,013 - DZA65_RS14805 0.37 -0.5
3,227,013 - DZA65_RS14805 0.37 +0.4
3,227,150 + DZA65_RS14805 0.52 -0.9
3,227,150 + DZA65_RS14805 0.52 +0.3

Or see this region's nucleotide sequence