Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14540

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,166,070	-				-0.1
3,166,070	-				+0.6
3,166,070	-				-0.9
3,166,070	-				+0.7
3,166,092	+				+0.1
3,166,093	-				-0.1
3,166,121	+				+0.3
3,166,124	-				-1.8
3,166,285	+		DZA65_RS14535	0.16	-0.2
3,166,285	+		DZA65_RS14535	0.16	+0.5
3,166,335	+		DZA65_RS14535	0.21	+0.6
3,166,335	+		DZA65_RS14535	0.21	-1.8
3,166,335	+		DZA65_RS14535	0.21	-1.7
3,166,336	-		DZA65_RS14535	0.21	-2.2
3,166,336	-		DZA65_RS14535	0.21	+1.8
3,166,336	-		DZA65_RS14535	0.21	-0.8
3,166,390	+		DZA65_RS14535	0.27	-0.8
3,166,390	+		DZA65_RS14535	0.27	+0.1
3,166,478	+		DZA65_RS14535	0.36	+2.1
3,166,478	+		DZA65_RS14535	0.36	+1.0
3,166,478	+		DZA65_RS14535	0.36	+0.3
3,166,479	-		DZA65_RS14535	0.36	-1.0
3,166,479	-		DZA65_RS14535	0.36	-1.2
3,166,489	+		DZA65_RS14535	0.38	-0.3
3,166,490	-		DZA65_RS14535	0.38	-1.2
3,166,635	-		DZA65_RS14535	0.53	-2.5
3,166,744	-		DZA65_RS14535	0.65	-0.4
3,166,777	+		DZA65_RS14535	0.68	+0.1
3,166,777	+		DZA65_RS14535	0.68	-0.8
3,166,778	-		DZA65_RS14535	0.69	+0.2
3,166,778	-		DZA65_RS14535	0.69	+2.3
3,166,778	-		DZA65_RS14535	0.69	-0.2
3,166,778	-		DZA65_RS14535	0.69	-0.2
3,166,778	-		DZA65_RS14535	0.69	-0.3
3,166,778	-		DZA65_RS14535	0.69	-1.0
3,166,808	+		DZA65_RS14535	0.72	-0.1
3,166,808	+		DZA65_RS14535	0.72	-1.2
3,166,808	+		DZA65_RS14535	0.72	-0.8
3,166,809	-		DZA65_RS14535	0.72	-1.2
3,166,809	-		DZA65_RS14535	0.72	-1.7
3,166,918	+		DZA65_RS14535	0.84	+1.0
3,166,919	-		DZA65_RS14535	0.84	-1.8
3,166,985	+				-0.1
3,167,075	+				+0.7
3,167,075	+				+0.2
3,167,075	+				-1.0
3,167,076	-				+0.4
3,167,076	-				+1.0
3,167,088	+				-1.1
3,167,088	+				+0.6
3,167,088	+				-0.2
3,167,089	-				-0.2
3,167,098	-				+0.1
3,167,098	-				+0.2
3,167,117	+				+0.2
3,167,117	+				-0.4
3,167,117	+				-2.0
3,167,117	+				-1.0
3,167,117	+				+0.1
3,167,117	+				-1.0
3,167,117	+				-0.3
3,167,118	-				-2.5
3,167,118	-				-0.4
3,167,118	-				+1.3
3,167,118	-				-0.4
3,167,118	-				+0.8
3,167,119	+				+1.0
3,167,119	+				+0.4
3,167,169	+		DZA65_RS14540	0.12	-0.2
3,167,188	+		DZA65_RS14540	0.14	+0.9
3,167,189	-		DZA65_RS14540	0.14	-0.1
3,167,239	-		DZA65_RS14540	0.19	+0.3
3,167,239	-		DZA65_RS14540	0.19	-0.5
3,167,239	-		DZA65_RS14540	0.19	-0.4
3,167,239	-		DZA65_RS14540	0.19	-1.0
3,167,239	-		DZA65_RS14540	0.19	-0.7
3,167,241	+		DZA65_RS14540	0.19	-0.0
3,167,277	+		DZA65_RS14540	0.23	-1.1
3,167,277	+		DZA65_RS14540	0.23	+0.3
3,167,277	+		DZA65_RS14540	0.23	-0.3
3,167,278	-		DZA65_RS14540	0.23	-1.5
3,167,291	+		DZA65_RS14540	0.25	+0.2
3,167,292	-		DZA65_RS14540	0.25	-0.2
3,167,348	+		DZA65_RS14540	0.30	-0.3
3,167,349	-		DZA65_RS14540	0.31	-0.1
3,167,349	-		DZA65_RS14540	0.31	-0.7
3,167,349	-		DZA65_RS14540	0.31	-1.5
3,167,349	-		DZA65_RS14540	0.31	-0.2
3,167,349	-		DZA65_RS14540	0.31	+0.6
3,167,358	-		DZA65_RS14540	0.31	-0.2
3,167,364	+		DZA65_RS14540	0.32	+0.3
3,167,364	+		DZA65_RS14540	0.32	-0.2
3,167,364	+		DZA65_RS14540	0.32	-0.8
3,167,364	+		DZA65_RS14540	0.32	-0.3
3,167,364	+		DZA65_RS14540	0.32	-1.8
3,167,364	+		DZA65_RS14540	0.32	-1.5
3,167,365	-		DZA65_RS14540	0.32	-0.9
3,167,365	-		DZA65_RS14540	0.32	+0.7
3,167,365	-		DZA65_RS14540	0.32	+0.6
3,167,365	-		DZA65_RS14540	0.32	-0.6
3,167,366	+		DZA65_RS14540	0.32	+1.2
3,167,366	+				+1.3
3,167,366	+		DZA65_RS14540	0.32	-0.8
3,167,366	+		DZA65_RS14540	0.32	-0.7
3,167,366	+		DZA65_RS14540	0.32	+1.2
3,167,366	+		DZA65_RS14540	0.32	+0.3
3,167,366	+		DZA65_RS14540	0.32	+0.3
3,167,366	+		DZA65_RS14540	0.32	-0.7
3,167,366	+		DZA65_RS14540	0.32	+1.6
3,167,366	+		DZA65_RS14540	0.32	-0.7
3,167,366	+		DZA65_RS14540	0.32	+0.3
3,167,366	+		DZA65_RS14540	0.32	-0.7
3,167,366	+		DZA65_RS14540	0.32	-2.0
3,167,366	+		DZA65_RS14540	0.32	-0.7
3,167,366	+		DZA65_RS14540	0.32	-2.0
3,167,366	+		DZA65_RS14540	0.32	-0.1
3,167,367	-		DZA65_RS14540	0.32	-0.1
3,167,367	-		DZA65_RS14540	0.32	+0.2
3,167,367	-		DZA65_RS14540	0.32	-0.1
3,167,367	-		DZA65_RS14540	0.32	-0.3
3,167,367	-		DZA65_RS14540	0.32	+0.1
3,167,367	-		DZA65_RS14540	0.32	-1.9
3,167,367	-		DZA65_RS14540	0.32	-1.2
3,167,367	-		DZA65_RS14540	0.32	-0.3
3,167,367	-		DZA65_RS14540	0.32	+0.5
3,167,367	-		DZA65_RS14540	0.32	+0.3
3,167,367	-		DZA65_RS14540	0.32	+0.3
3,167,367	-		DZA65_RS14540	0.32	-0.0
3,167,367	-		DZA65_RS14540	0.32	-0.4
3,167,367	-		DZA65_RS14540	0.32	-1.5
3,167,367	-		DZA65_RS14540	0.32	-0.9
3,167,368	+		DZA65_RS14540	0.33	-0.2
3,167,368	+		DZA65_RS14540	0.33	+0.6
3,167,368	+		DZA65_RS14540	0.33	+0.2
3,167,368	+		DZA65_RS14540	0.33	+0.0
3,167,369	-		DZA65_RS14540	0.33	+0.1
3,167,369	-		DZA65_RS14540	0.33	+1.9
3,167,369	-		DZA65_RS14540	0.33	+0.0
3,167,369	-		DZA65_RS14540	0.33	-0.6
3,167,369	-		DZA65_RS14540	0.33	-0.5
3,167,369	-		DZA65_RS14540	0.33	-0.1
3,167,468	+		DZA65_RS14540	0.43	-0.7
3,167,519	+		DZA65_RS14540	0.48	+0.9
3,167,519	+		DZA65_RS14540	0.48	+1.7
3,167,520	-		DZA65_RS14540	0.48	-1.2
3,167,520	-		DZA65_RS14540	0.48	-1.1
3,167,520	-		DZA65_RS14540	0.48	+0.5
3,167,520	-		DZA65_RS14540	0.48	-0.7
3,167,520	-		DZA65_RS14540	0.48	-0.9
3,167,547	-		DZA65_RS14540	0.51	-0.9
3,167,640	+		DZA65_RS14540	0.60	-0.5
3,167,657	+		DZA65_RS14540	0.62	+1.0
3,167,762	-		DZA65_RS14540	0.73	+0.9
3,167,767	+		DZA65_RS14540	0.74	-2.0
3,167,767	+		DZA65_RS14540	0.74	-0.3
3,167,767	+		DZA65_RS14540	0.74	-0.2
3,167,767	+		DZA65_RS14540	0.74	+0.0
3,167,767	+		DZA65_RS14540	0.74	+1.0
3,167,767	+		DZA65_RS14540	0.74	-0.4
3,167,768	-		DZA65_RS14540	0.74	-0.9
3,167,768	-		DZA65_RS14540	0.74	-0.3
3,167,768	-		DZA65_RS14540	0.74	-0.1
3,167,768	-		DZA65_RS14540	0.74	+0.6
3,167,768	-		DZA65_RS14540	0.74	+0.1
3,167,768	-		DZA65_RS14540	0.74	-2.0
3,167,782	+		DZA65_RS14540	0.75	-0.3
3,167,782	+		DZA65_RS14540	0.75	+0.1
3,167,782	+		DZA65_RS14540	0.75	+1.3
3,167,783	-		DZA65_RS14540	0.75	-1.5
3,167,822	+				+1.8
3,167,839	-		DZA65_RS14540	0.81	-1.4
3,167,839	-		DZA65_RS14540	0.81	-1.2
3,167,943	-				+1.3
3,167,984	+				-0.3
3,167,985	-				+0.4
3,168,013	-				+1.3
3,168,025	+				+1.2
3,168,026	-				-1.2
3,168,029	-				-0.3
3,168,039	+				+1.2
3,168,039	+				-2.1
3,168,039	+				-1.2
3,168,040	-				-1.9
3,168,164	+		DZA65_RS14545	0.13	-2.0
3,168,171	-		DZA65_RS14545	0.14	-1.0
3,168,193	+		DZA65_RS14545	0.16	+0.0
3,168,193	+		DZA65_RS14545	0.16	+0.0
3,168,194	-		DZA65_RS14545	0.16	+0.4
3,168,232	+		DZA65_RS14545	0.20	+0.2
3,168,258	+		DZA65_RS14545	0.22	-0.5
3,168,265	-				+2.4
3,168,348	-		DZA65_RS14545	0.32	-0.3
3,168,427	+		DZA65_RS14545	0.40	-0.5
3,168,428	-		DZA65_RS14545	0.40	-0.0
3,168,428	-		DZA65_RS14545	0.40	+1.4
3,168,442	+		DZA65_RS14545	0.41	-0.9
3,168,472	-		DZA65_RS14545	0.44	-0.3
3,168,472	-		DZA65_RS14545	0.44	-2.5
3,168,472	-				+1.1
3,168,474	+		DZA65_RS14545	0.44	-0.5
3,168,475	-		DZA65_RS14545	0.45	-0.6
3,168,518	+		DZA65_RS14545	0.49	-0.9
3,168,562	-		DZA65_RS14545	0.53	-1.5
3,168,562	-		DZA65_RS14545	0.53	-0.1
3,168,582	+		DZA65_RS14545	0.55	+0.2
3,168,635	+		DZA65_RS14545	0.61	-1.8
3,168,635	+		DZA65_RS14545	0.61	-0.6
3,168,635	+		DZA65_RS14545	0.61	+0.4
3,168,635	+		DZA65_RS14545	0.61	-0.0
3,168,635	+		DZA65_RS14545	0.61	-0.1
3,168,636	-		DZA65_RS14545	0.61	-1.1
3,168,668	+		DZA65_RS14545	0.64	-0.4
3,168,668	+		DZA65_RS14545	0.64	-0.1
3,168,668	+		DZA65_RS14545	0.64	-2.0
3,168,668	+		DZA65_RS14545	0.64	-1.5
3,168,668	+		DZA65_RS14545	0.64	-0.2
3,168,669	-		DZA65_RS14545	0.64	-2.0
3,168,669	-		DZA65_RS14545	0.64	-0.6
3,168,671	-		DZA65_RS14545	0.65	-0.3
3,168,671	-		DZA65_RS14545	0.65	+0.3
3,168,746	+		DZA65_RS14545	0.72	+0.6
3,168,746	+		DZA65_RS14545	0.72	+0.2
3,168,747	-		DZA65_RS14545	0.72	+4.1
3,168,750	+		DZA65_RS14545	0.73	+0.4
3,168,751	-		DZA65_RS14545	0.73	+0.3
3,168,751	-		DZA65_RS14545	0.73	-1.5
3,168,751	-		DZA65_RS14545	0.73	-0.7
3,168,751	-		DZA65_RS14545	0.73	+0.2
3,168,798	+		DZA65_RS14545	0.77	-0.5
3,168,798	+		DZA65_RS14545	0.77	-0.2
3,168,798	+		DZA65_RS14545	0.77	+0.1
3,168,798	+		DZA65_RS14545	0.77	-0.4
3,168,799	-		DZA65_RS14545	0.78	+1.5
3,168,799	-		DZA65_RS14545	0.78	-1.3
3,168,799	-		DZA65_RS14545	0.78	-0.4
3,168,799	-		DZA65_RS14545	0.78	-1.3
3,168,916	+		DZA65_RS14545	0.90	-0.5
3,168,916	+		DZA65_RS14545	0.90	+0.1
3,168,917	-		DZA65_RS14545	0.90	-0.6
3,168,917	-		DZA65_RS14545	0.90	+0.4
3,168,917	-		DZA65_RS14545	0.90	+0.4
3,168,919	+		DZA65_RS14545	0.90	+1.9
3,168,919	+		DZA65_RS14545	0.90	+0.6
3,168,919	+		DZA65_RS14545	0.90	-0.9
3,168,919	+		DZA65_RS14545	0.90	-1.0
3,168,920	-		DZA65_RS14545	0.90	-2.0
3,168,920	-		DZA65_RS14545	0.90	+0.6
3,168,950	+				+0.2
3,168,950	+				-2.0
3,168,951	-				+0.4
3,168,958	+				+0.9
3,168,958	+				-0.9
3,168,958	+				-0.5
3,168,958	+				+2.6
3,168,959	-				+0.4
3,168,959	-				-3.0
3,168,959	-				+0.0
3,168,959	-				-2.5
3,168,959	-				-2.5
3,168,959	-				+0.8
3,168,959	-				-0.3
3,168,959	-				-1.0
3,168,959	-				+0.4
3,168,959	-				-0.4
3,168,959	-				+0.7
3,168,959	-				+0.6
3,168,960	+				+1.1
3,168,960	+				+0.5
3,168,960	+				-0.5
3,168,960	+				-0.2
3,168,960	+				+0.1
3,168,960	+				+0.5
3,168,960	+				+0.1
3,168,961	-				-0.5
3,168,961	-				-0.1
3,168,961	-				+1.1
3,168,961	-				-1.2
3,168,961	-				-0.5
3,168,961	-				-2.0
3,168,961	-				+1.4
3,168,967	+				-0.8
3,168,967	+				-1.5
3,168,968	-				-0.5
3,168,968	-				+1.2
3,168,968	-				+0.6
3,168,990	+				+0.4
3,169,007	+				+0.4
3,169,008	-				-1.5
3,169,008	-				+0.4