Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08960

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08950 and DZA65_RS08955 are separated by 153 nucleotidesDZA65_RS08955 and DZA65_RS22840 overlap by 39 nucleotidesDZA65_RS22840 and DZA65_RS08960 are separated by 198 nucleotidesDZA65_RS08960 and DZA65_RS08965 are separated by 87 nucleotides DZA65_RS08950: DZA65_RS08950 - CidA/LrgA family protein, at 1,886,315 to 1,886,725 _RS08950 DZA65_RS08955: DZA65_RS08955 - glycoside hydrolase family 3 protein, at 1,886,879 to 1,887,241 _RS08955 DZA65_RS22840: DZA65_RS22840 - hypothetical protein, at 1,887,203 to 1,887,418 _RS22840 DZA65_RS08960: DZA65_RS08960 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 1,887,617 to 1,888,900 _RS08960 DZA65_RS08965: DZA65_RS08965 - biotin synthase BioB, at 1,888,988 to 1,890,025 _RS08965 Position (kb) 1887 1888 1889Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1886.633 kb on + strand, within DZA65_RS08950at 1886.634 kb on - strand, within DZA65_RS08950at 1886.642 kb on + strand, within DZA65_RS08950at 1886.670 kb on + strand, within DZA65_RS08950at 1886.671 kb on - strand, within DZA65_RS08950at 1886.691 kb on - strandat 1886.694 kb on + strandat 1886.695 kb on - strandat 1886.759 kb on + strandat 1886.759 kb on + strandat 1886.760 kb on - strandat 1886.766 kb on - strandat 1886.766 kb on - strandat 1886.769 kb on - strandat 1886.769 kb on - strandat 1886.769 kb on - strandat 1886.783 kb on - strandat 1886.817 kb on + strandat 1886.817 kb on + strandat 1886.817 kb on + strandat 1886.818 kb on - strandat 1886.818 kb on - strandat 1886.818 kb on - strandat 1886.818 kb on - strandat 1886.918 kb on - strand, within DZA65_RS08955at 1887.000 kb on + strand, within DZA65_RS08955at 1887.000 kb on + strand, within DZA65_RS08955at 1887.001 kb on - strand, within DZA65_RS08955at 1887.001 kb on - strand, within DZA65_RS08955at 1887.032 kb on + strand, within DZA65_RS08955at 1887.032 kb on + strand, within DZA65_RS08955at 1887.033 kb on - strand, within DZA65_RS08955at 1887.033 kb on - strand, within DZA65_RS08955at 1887.033 kb on - strand, within DZA65_RS08955at 1887.033 kb on - strand, within DZA65_RS08955at 1887.112 kb on + strand, within DZA65_RS08955at 1887.112 kb on + strand, within DZA65_RS08955at 1887.112 kb on + strand, within DZA65_RS08955at 1887.114 kb on + strand, within DZA65_RS08955at 1887.114 kb on + strand, within DZA65_RS08955at 1887.114 kb on + strand, within DZA65_RS08955at 1887.114 kb on + strand, within DZA65_RS08955at 1887.114 kb on + strand, within DZA65_RS08955at 1887.114 kb on + strand, within DZA65_RS08955at 1887.114 kb on + strand, within DZA65_RS08955at 1887.114 kb on + strand, within DZA65_RS08955at 1887.114 kb on + strandat 1887.115 kb on - strand, within DZA65_RS08955at 1887.115 kb on - strand, within DZA65_RS08955at 1887.115 kb on - strand, within DZA65_RS08955at 1887.115 kb on - strand, within DZA65_RS08955at 1887.115 kb on - strand, within DZA65_RS08955at 1887.115 kb on - strand, within DZA65_RS08955at 1887.115 kb on - strand, within DZA65_RS08955at 1887.115 kb on - strand, within DZA65_RS08955at 1887.115 kb on - strand, within DZA65_RS08955at 1887.165 kb on + strand, within DZA65_RS08955at 1887.244 kb on - strand, within DZA65_RS22840at 1887.353 kb on + strand, within DZA65_RS22840at 1887.464 kb on + strandat 1887.464 kb on + strandat 1887.586 kb on + strandat 1887.587 kb on - strandat 1887.587 kb on - strandat 1887.619 kb on - strandat 1887.619 kb on - strandat 1887.619 kb on - strandat 1887.619 kb on - strandat 1887.709 kb on - strandat 1887.709 kb on - strandat 1887.709 kb on - strandat 1887.776 kb on - strand, within DZA65_RS08960at 1887.776 kb on - strand, within DZA65_RS08960at 1888.062 kb on + strand, within DZA65_RS08960at 1888.062 kb on + strand, within DZA65_RS08960at 1888.063 kb on - strand, within DZA65_RS08960at 1888.063 kb on - strand, within DZA65_RS08960at 1888.063 kb on - strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.181 kb on + strand, within DZA65_RS08960at 1888.182 kb on - strand, within DZA65_RS08960at 1888.182 kb on - strand, within DZA65_RS08960at 1888.182 kb on - strand, within DZA65_RS08960at 1888.182 kb on - strand, within DZA65_RS08960at 1888.199 kb on + strand, within DZA65_RS08960at 1888.222 kb on - strand, within DZA65_RS08960at 1888.233 kb on + strand, within DZA65_RS08960at 1888.234 kb on - strand, within DZA65_RS08960at 1888.234 kb on - strand, within DZA65_RS08960at 1888.234 kb on - strand, within DZA65_RS08960at 1888.234 kb on - strand, within DZA65_RS08960at 1888.398 kb on + strand, within DZA65_RS08960at 1888.398 kb on + strand, within DZA65_RS08960at 1888.399 kb on - strandat 1888.399 kb on - strand, within DZA65_RS08960at 1888.399 kb on - strand, within DZA65_RS08960at 1888.399 kb on - strand, within DZA65_RS08960at 1888.407 kb on + strand, within DZA65_RS08960at 1888.459 kb on + strand, within DZA65_RS08960at 1888.470 kb on + strand, within DZA65_RS08960at 1888.524 kb on + strand, within DZA65_RS08960at 1888.723 kb on + strand, within DZA65_RS08960at 1888.724 kb on - strand, within DZA65_RS08960at 1888.724 kb on - strand, within DZA65_RS08960at 1888.725 kb on + strand, within DZA65_RS08960at 1888.725 kb on + strand, within DZA65_RS08960at 1888.725 kb on + strand, within DZA65_RS08960at 1888.725 kb on + strand, within DZA65_RS08960at 1888.726 kb on - strand, within DZA65_RS08960at 1888.851 kb on + strandat 1888.852 kb on - strandat 1888.852 kb on - strandat 1888.852 kb on - strandat 1888.852 kb on - strandat 1888.852 kb on - strandat 1888.901 kb on - strandat 1888.947 kb on + strandat 1888.947 kb on + strandat 1888.947 kb on + strandat 1888.948 kb on - strandat 1888.948 kb on - strandat 1888.948 kb on - strandat 1888.948 kb on - strandat 1888.948 kb on - strandat 1888.952 kb on + strandat 1888.952 kb on + strandat 1888.953 kb on - strandat 1888.953 kb on - strandat 1889.002 kb on - strandat 1889.124 kb on + strand, within DZA65_RS08965at 1889.162 kb on + strand, within DZA65_RS08965at 1889.162 kb on + strand, within DZA65_RS08965at 1889.163 kb on - strand, within DZA65_RS08965at 1889.163 kb on - strand, within DZA65_RS08965at 1889.315 kb on - strand, within DZA65_RS08965at 1889.435 kb on + strand, within DZA65_RS08965at 1889.435 kb on + strand, within DZA65_RS08965at 1889.436 kb on - strand, within DZA65_RS08965at 1889.436 kb on - strand, within DZA65_RS08965at 1889.436 kb on - strand, within DZA65_RS08965at 1889.443 kb on + strand, within DZA65_RS08965at 1889.443 kb on + strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.444 kb on - strand, within DZA65_RS08965at 1889.468 kb on + strand, within DZA65_RS08965at 1889.469 kb on - strand, within DZA65_RS08965at 1889.476 kb on + strand, within DZA65_RS08965at 1889.476 kb on + strand, within DZA65_RS08965at 1889.477 kb on - strand, within DZA65_RS08965at 1889.477 kb on - strand, within DZA65_RS08965at 1889.477 kb on - strand, within DZA65_RS08965at 1889.477 kb on - strand, within DZA65_RS08965at 1889.491 kb on + strand, within DZA65_RS08965at 1889.491 kb on + strand, within DZA65_RS08965at 1889.492 kb on - strand, within DZA65_RS08965at 1889.495 kb on + strand, within DZA65_RS08965at 1889.495 kb on + strand, within DZA65_RS08965at 1889.495 kb on + strand, within DZA65_RS08965at 1889.496 kb on - strand, within DZA65_RS08965at 1889.496 kb on - strand, within DZA65_RS08965at 1889.512 kb on + strand, within DZA65_RS08965at 1889.512 kb on + strand, within DZA65_RS08965at 1889.513 kb on - strand, within DZA65_RS08965at 1889.513 kb on - strand, within DZA65_RS08965at 1889.759 kb on + strand, within DZA65_RS08965at 1889.759 kb on + strand, within DZA65_RS08965at 1889.759 kb on + strand, within DZA65_RS08965at 1889.759 kb on + strand, within DZA65_RS08965at 1889.760 kb on - strand, within DZA65_RS08965at 1889.760 kb on - strand, within DZA65_RS08965at 1889.760 kb on - strand, within DZA65_RS08965at 1889.760 kb on - strand, within DZA65_RS08965at 1889.760 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,886,633 + DZA65_RS08950 0.77 +0.8
1,886,634 - DZA65_RS08950 0.78 +0.1
1,886,642 + DZA65_RS08950 0.80 -1.4
1,886,670 + DZA65_RS08950 0.86 +1.1
1,886,671 - DZA65_RS08950 0.87 -1.4
1,886,691 - -1.3
1,886,694 + -0.5
1,886,695 - +0.3
1,886,759 + -2.7
1,886,759 + -0.0
1,886,760 - -1.5
1,886,766 - +0.4
1,886,766 - +1.3
1,886,769 - -1.3
1,886,769 - -0.9
1,886,769 - -0.3
1,886,783 - -1.9
1,886,817 + +0.7
1,886,817 + -0.5
1,886,817 + -0.3
1,886,818 - +0.3
1,886,818 - -0.5
1,886,818 - +0.6
1,886,818 - -0.3
1,886,918 - DZA65_RS08955 0.11 +0.0
1,887,000 + DZA65_RS08955 0.33 -0.3
1,887,000 + DZA65_RS08955 0.33 -2.2
1,887,001 - DZA65_RS08955 0.34 +0.4
1,887,001 - DZA65_RS08955 0.34 -0.7
1,887,032 + DZA65_RS08955 0.42 -2.0
1,887,032 + DZA65_RS08955 0.42 +1.6
1,887,033 - DZA65_RS08955 0.42 +0.6
1,887,033 - DZA65_RS08955 0.42 -0.1
1,887,033 - DZA65_RS08955 0.42 -0.5
1,887,033 - DZA65_RS08955 0.42 -0.4
1,887,112 + DZA65_RS08955 0.64 -1.7
1,887,112 + DZA65_RS08955 0.64 +0.5
1,887,112 + DZA65_RS08955 0.64 +0.3
1,887,114 + DZA65_RS08955 0.65 -0.9
1,887,114 + DZA65_RS08955 0.65 +0.0
1,887,114 + DZA65_RS08955 0.65 +0.3
1,887,114 + DZA65_RS08955 0.65 -2.7
1,887,114 + DZA65_RS08955 0.65 -2.0
1,887,114 + DZA65_RS08955 0.65 +0.3
1,887,114 + DZA65_RS08955 0.65 +0.3
1,887,114 + DZA65_RS08955 0.65 -1.8
1,887,114 + +1.1
1,887,115 - DZA65_RS08955 0.65 +0.3
1,887,115 - DZA65_RS08955 0.65 -0.6
1,887,115 - DZA65_RS08955 0.65 -0.1
1,887,115 - DZA65_RS08955 0.65 -0.1
1,887,115 - DZA65_RS08955 0.65 +0.3
1,887,115 - DZA65_RS08955 0.65 +0.1
1,887,115 - DZA65_RS08955 0.65 +0.7
1,887,115 - DZA65_RS08955 0.65 -0.2
1,887,115 - DZA65_RS08955 0.65 +0.7
1,887,165 + DZA65_RS08955 0.79 -1.5
1,887,244 - DZA65_RS22840 0.19 -0.8
1,887,353 + DZA65_RS22840 0.69 +0.3
1,887,464 + +0.3
1,887,464 + -0.3
1,887,586 + -0.3
1,887,587 - -1.1
1,887,587 - +0.6
1,887,619 - +0.5
1,887,619 - +0.1
1,887,619 - -1.1
1,887,619 - +1.5
1,887,709 - -0.5
1,887,709 - -0.0
1,887,709 - +0.7
1,887,776 - DZA65_RS08960 0.12 -0.2
1,887,776 - DZA65_RS08960 0.12 -0.0
1,888,062 + DZA65_RS08960 0.35 +0.6
1,888,062 + DZA65_RS08960 0.35 -0.1
1,888,063 - DZA65_RS08960 0.35 +0.3
1,888,063 - DZA65_RS08960 0.35 +0.0
1,888,063 - DZA65_RS08960 0.35 -0.3
1,888,181 + DZA65_RS08960 0.44 -0.5
1,888,181 + DZA65_RS08960 0.44 -1.0
1,888,181 + DZA65_RS08960 0.44 -1.1
1,888,181 + DZA65_RS08960 0.44 +1.0
1,888,181 + DZA65_RS08960 0.44 -2.4
1,888,182 - DZA65_RS08960 0.44 -2.0
1,888,182 - DZA65_RS08960 0.44 +1.3
1,888,182 - DZA65_RS08960 0.44 -0.5
1,888,182 - DZA65_RS08960 0.44 -0.1
1,888,199 + DZA65_RS08960 0.45 -0.6
1,888,222 - DZA65_RS08960 0.47 -0.2
1,888,233 + DZA65_RS08960 0.48 -0.6
1,888,234 - DZA65_RS08960 0.48 -0.4
1,888,234 - DZA65_RS08960 0.48 -0.2
1,888,234 - DZA65_RS08960 0.48 -0.3
1,888,234 - DZA65_RS08960 0.48 -1.6
1,888,398 + DZA65_RS08960 0.61 -1.1
1,888,398 + DZA65_RS08960 0.61 -2.5
1,888,399 - +0.9
1,888,399 - DZA65_RS08960 0.61 -0.5
1,888,399 - DZA65_RS08960 0.61 -2.0
1,888,399 - DZA65_RS08960 0.61 -0.5
1,888,407 + DZA65_RS08960 0.62 -2.0
1,888,459 + DZA65_RS08960 0.66 -0.7
1,888,470 + DZA65_RS08960 0.66 -0.2
1,888,524 + DZA65_RS08960 0.71 -0.3
1,888,723 + DZA65_RS08960 0.86 +0.7
1,888,724 - DZA65_RS08960 0.86 -1.9
1,888,724 - DZA65_RS08960 0.86 -0.5
1,888,725 + DZA65_RS08960 0.86 -0.4
1,888,725 + DZA65_RS08960 0.86 -1.1
1,888,725 + DZA65_RS08960 0.86 +0.1
1,888,725 + DZA65_RS08960 0.86 -0.1
1,888,726 - DZA65_RS08960 0.86 +0.9
1,888,851 + +1.6
1,888,852 - +0.0
1,888,852 - -0.5
1,888,852 - -1.5
1,888,852 - -0.1
1,888,852 - -1.6
1,888,901 - -0.4
1,888,947 + +0.3
1,888,947 + -0.1
1,888,947 + +0.0
1,888,948 - -0.2
1,888,948 - -1.0
1,888,948 - -0.7
1,888,948 - +0.3
1,888,948 - -1.3
1,888,952 + +0.7
1,888,952 + +1.9
1,888,953 - -0.2
1,888,953 - -0.8
1,889,002 - -0.6
1,889,124 + DZA65_RS08965 0.13 -0.3
1,889,162 + DZA65_RS08965 0.17 -0.2
1,889,162 + DZA65_RS08965 0.17 -0.7
1,889,163 - DZA65_RS08965 0.17 -0.5
1,889,163 - DZA65_RS08965 0.17 -1.0
1,889,315 - DZA65_RS08965 0.32 -0.7
1,889,435 + DZA65_RS08965 0.43 -1.9
1,889,435 + DZA65_RS08965 0.43 -1.9
1,889,436 - DZA65_RS08965 0.43 -0.6
1,889,436 - DZA65_RS08965 0.43 -0.5
1,889,436 - DZA65_RS08965 0.43 -0.3
1,889,443 + DZA65_RS08965 0.44 -2.9
1,889,443 + DZA65_RS08965 0.44 +0.7
1,889,444 - DZA65_RS08965 0.44 +0.4
1,889,444 - DZA65_RS08965 0.44 -0.3
1,889,444 - DZA65_RS08965 0.44 +1.0
1,889,444 - DZA65_RS08965 0.44 +0.0
1,889,444 - DZA65_RS08965 0.44 -0.7
1,889,444 - DZA65_RS08965 0.44 +0.8
1,889,444 - DZA65_RS08965 0.44 -0.9
1,889,468 + DZA65_RS08965 0.46 -1.1
1,889,469 - DZA65_RS08965 0.46 -0.2
1,889,476 + DZA65_RS08965 0.47 -0.8
1,889,476 + DZA65_RS08965 0.47 -1.1
1,889,477 - DZA65_RS08965 0.47 -0.6
1,889,477 - DZA65_RS08965 0.47 -2.7
1,889,477 - DZA65_RS08965 0.47 -1.9
1,889,477 - DZA65_RS08965 0.47 -0.1
1,889,491 + DZA65_RS08965 0.48 +0.6
1,889,491 + DZA65_RS08965 0.48 -1.2
1,889,492 - DZA65_RS08965 0.49 -0.8
1,889,495 + DZA65_RS08965 0.49 -0.4
1,889,495 + DZA65_RS08965 0.49 +0.4
1,889,495 + DZA65_RS08965 0.49 +0.5
1,889,496 - DZA65_RS08965 0.49 -2.9
1,889,496 - DZA65_RS08965 0.49 -0.6
1,889,512 + DZA65_RS08965 0.50 -0.7
1,889,512 + DZA65_RS08965 0.50 -2.7
1,889,513 - DZA65_RS08965 0.51 -1.1
1,889,513 - DZA65_RS08965 0.51 -1.5
1,889,759 + DZA65_RS08965 0.74 +0.9
1,889,759 + DZA65_RS08965 0.74 -0.3
1,889,759 + DZA65_RS08965 0.74 -1.8
1,889,759 + DZA65_RS08965 0.74 +0.1
1,889,760 - DZA65_RS08965 0.74 -0.7
1,889,760 - DZA65_RS08965 0.74 +0.6
1,889,760 - DZA65_RS08965 0.74 +0.7
1,889,760 - DZA65_RS08965 0.74 -0.5
1,889,760 - +0.3

Or see this region's nucleotide sequence