Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07275 and DZA65_RS07280 overlap by 17 nucleotides DZA65_RS07280 and DZA65_RS07285 overlap by 4 nucleotides DZA65_RS07285 and DZA65_RS07290 are separated by 394 nucleotides
DZA65_RS07275: DZA65_RS07275 - 2-dehydro-3-deoxygalactonokinase, at 1,513,146 to 1,514,042
_RS07275
DZA65_RS07280: DZA65_RS07280 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 1,514,026 to 1,514,643
_RS07280
DZA65_RS07285: DZA65_RS07285 - galactonate dehydratase, at 1,514,640 to 1,515,788
_RS07285
DZA65_RS07290: DZA65_RS07290 - MFS transporter, at 1,516,183 to 1,517,472
_RS07290
Position (kb) 1514
1515
1516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1513.672 kb on + strand, within DZA65_RS07275 at 1513.878 kb on + strand, within DZA65_RS07275 at 1513.878 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.952 kb on - strand, within DZA65_RS07275 at 1513.952 kb on - strand, within DZA65_RS07275 at 1513.952 kb on - strand, within DZA65_RS07275 at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1514.011 kb on + strand at 1514.012 kb on - strand at 1514.012 kb on - strand at 1514.037 kb on + strand at 1514.038 kb on - strand at 1514.038 kb on - strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.169 kb on + strand, within DZA65_RS07280 at 1514.169 kb on + strand, within DZA65_RS07280 at 1514.221 kb on - strand, within DZA65_RS07280 at 1514.228 kb on + strand, within DZA65_RS07280 at 1514.229 kb on - strand, within DZA65_RS07280 at 1514.239 kb on + strand, within DZA65_RS07280 at 1514.239 kb on + strand, within DZA65_RS07280 at 1514.253 kb on - strand, within DZA65_RS07280 at 1514.253 kb on - strand, within DZA65_RS07280 at 1514.274 kb on - strand, within DZA65_RS07280 at 1514.274 kb on - strand, within DZA65_RS07280 at 1514.434 kb on + strand, within DZA65_RS07280 at 1514.435 kb on - strand, within DZA65_RS07280 at 1514.435 kb on - strand, within DZA65_RS07280 at 1514.435 kb on - strand, within DZA65_RS07280 at 1514.435 kb on - strand, within DZA65_RS07280 at 1514.456 kb on + strand, within DZA65_RS07280 at 1514.518 kb on + strand, within DZA65_RS07280 at 1514.518 kb on + strand, within DZA65_RS07280 at 1514.519 kb on - strand, within DZA65_RS07280 at 1514.519 kb on - strand, within DZA65_RS07280 at 1514.519 kb on - strand, within DZA65_RS07280 at 1514.563 kb on + strand, within DZA65_RS07280 at 1514.623 kb on + strand at 1514.624 kb on - strand at 1514.624 kb on - strand at 1514.624 kb on - strand at 1514.624 kb on - strand at 1514.625 kb on + strand at 1514.664 kb on + strand at 1514.664 kb on + strand at 1514.790 kb on + strand, within DZA65_RS07285 at 1514.825 kb on + strand, within DZA65_RS07285 at 1514.826 kb on - strand, within DZA65_RS07285 at 1514.842 kb on - strand, within DZA65_RS07285 at 1514.947 kb on - strand, within DZA65_RS07285 at 1514.953 kb on + strand, within DZA65_RS07285 at 1514.954 kb on - strand, within DZA65_RS07285 at 1514.954 kb on - strand, within DZA65_RS07285 at 1514.975 kb on + strand, within DZA65_RS07285 at 1514.988 kb on + strand, within DZA65_RS07285 at 1514.988 kb on + strand, within DZA65_RS07285 at 1514.989 kb on - strand, within DZA65_RS07285 at 1514.989 kb on - strand, within DZA65_RS07285 at 1515.104 kb on + strand, within DZA65_RS07285 at 1515.104 kb on + strand, within DZA65_RS07285 at 1515.104 kb on + strand, within DZA65_RS07285 at 1515.104 kb on + strand, within DZA65_RS07285 at 1515.105 kb on - strand, within DZA65_RS07285 at 1515.114 kb on - strand, within DZA65_RS07285 at 1515.246 kb on + strand, within DZA65_RS07285 at 1515.260 kb on + strand, within DZA65_RS07285 at 1515.294 kb on + strand, within DZA65_RS07285 at 1515.294 kb on + strand, within DZA65_RS07285 at 1515.294 kb on + strand, within DZA65_RS07285 at 1515.294 kb on + strand, within DZA65_RS07285 at 1515.297 kb on + strand, within DZA65_RS07285 at 1515.297 kb on + strand, within DZA65_RS07285 at 1515.297 kb on + strand at 1515.298 kb on - strand, within DZA65_RS07285 at 1515.347 kb on + strand, within DZA65_RS07285 at 1515.347 kb on + strand, within DZA65_RS07285 at 1515.347 kb on + strand, within DZA65_RS07285 at 1515.347 kb on + strand, within DZA65_RS07285 at 1515.347 kb on + strand, within DZA65_RS07285 at 1515.348 kb on - strand, within DZA65_RS07285 at 1515.348 kb on - strand, within DZA65_RS07285 at 1515.348 kb on - strand, within DZA65_RS07285 at 1515.348 kb on - strand, within DZA65_RS07285 at 1515.369 kb on - strand, within DZA65_RS07285 at 1515.432 kb on - strand, within DZA65_RS07285 at 1515.446 kb on + strand, within DZA65_RS07285 at 1515.447 kb on - strand, within DZA65_RS07285 at 1515.447 kb on - strand, within DZA65_RS07285 at 1515.503 kb on - strand, within DZA65_RS07285 at 1515.503 kb on - strand, within DZA65_RS07285 at 1515.559 kb on + strand, within DZA65_RS07285 at 1515.588 kb on + strand, within DZA65_RS07285 at 1515.588 kb on + strand, within DZA65_RS07285 at 1515.588 kb on + strand, within DZA65_RS07285 at 1515.588 kb on + strand, within DZA65_RS07285 at 1515.589 kb on - strand, within DZA65_RS07285 at 1515.591 kb on - strand, within DZA65_RS07285 at 1515.615 kb on + strand, within DZA65_RS07285 at 1515.616 kb on - strand, within DZA65_RS07285 at 1515.616 kb on - strand, within DZA65_RS07285 at 1515.627 kb on - strand, within DZA65_RS07285 at 1515.660 kb on + strand, within DZA65_RS07285 at 1515.660 kb on + strand, within DZA65_RS07285 at 1515.671 kb on + strand, within DZA65_RS07285 at 1515.723 kb on - strand at 1515.790 kb on - strand at 1515.826 kb on + strand at 1515.827 kb on - strand at 1515.836 kb on - strand at 1515.836 kb on - strand at 1515.836 kb on - strand at 1515.850 kb on - strand at 1515.865 kb on + strand at 1515.872 kb on + strand at 1515.873 kb on - strand at 1515.873 kb on - strand at 1515.873 kb on - strand at 1515.876 kb on - strand at 1515.876 kb on - strand at 1515.879 kb on + strand at 1515.936 kb on + strand at 1515.960 kb on - strand at 1516.023 kb on - strand at 1516.077 kb on - strand at 1516.101 kb on - strand at 1516.148 kb on - strand at 1516.180 kb on - strand at 1516.248 kb on + strand at 1516.248 kb on + strand at 1516.264 kb on + strand at 1516.265 kb on - strand at 1516.303 kb on - strand at 1516.342 kb on + strand, within DZA65_RS07290 at 1516.343 kb on - strand, within DZA65_RS07290 at 1516.369 kb on + strand, within DZA65_RS07290 at 1516.369 kb on + strand, within DZA65_RS07290 at 1516.369 kb on + strand, within DZA65_RS07290 at 1516.369 kb on + strand, within DZA65_RS07290 at 1516.369 kb on + strand, within DZA65_RS07290 at 1516.369 kb on + strand, within DZA65_RS07290 at 1516.369 kb on + strand, within DZA65_RS07290 at 1516.370 kb on - strand, within DZA65_RS07290 at 1516.370 kb on - strand, within DZA65_RS07290 at 1516.370 kb on - strand, within DZA65_RS07290 at 1516.370 kb on - strand, within DZA65_RS07290 at 1516.370 kb on - strand, within DZA65_RS07290 at 1516.371 kb on + strand, within DZA65_RS07290 at 1516.371 kb on + strand, within DZA65_RS07290 at 1516.371 kb on + strand, within DZA65_RS07290 at 1516.371 kb on + strand, within DZA65_RS07290 at 1516.371 kb on + strand, within DZA65_RS07290 at 1516.371 kb on + strand, within DZA65_RS07290 at 1516.371 kb on + strand, within DZA65_RS07290 at 1516.372 kb on - strand, within DZA65_RS07290 at 1516.372 kb on - strand, within DZA65_RS07290 at 1516.372 kb on - strand, within DZA65_RS07290 at 1516.372 kb on - strand, within DZA65_RS07290 at 1516.372 kb on - strand, within DZA65_RS07290 at 1516.372 kb on - strand, within DZA65_RS07290 at 1516.372 kb on - strand, within DZA65_RS07290 at 1516.376 kb on + strand, within DZA65_RS07290 at 1516.376 kb on + strand, within DZA65_RS07290 at 1516.429 kb on + strand, within DZA65_RS07290 at 1516.429 kb on + strand, within DZA65_RS07290 at 1516.429 kb on + strand, within DZA65_RS07290 at 1516.429 kb on + strand, within DZA65_RS07290 at 1516.430 kb on - strand, within DZA65_RS07290 at 1516.430 kb on - strand, within DZA65_RS07290 at 1516.435 kb on - strand, within DZA65_RS07290 at 1516.499 kb on + strand, within DZA65_RS07290 at 1516.560 kb on + strand, within DZA65_RS07290 at 1516.561 kb on - strand, within DZA65_RS07290 at 1516.612 kb on + strand, within DZA65_RS07290 at 1516.612 kb on + strand, within DZA65_RS07290 at 1516.612 kb on + strand, within DZA65_RS07290 at 1516.613 kb on - strand, within DZA65_RS07290 at 1516.613 kb on - strand, within DZA65_RS07290 at 1516.613 kb on - strand, within DZA65_RS07290 at 1516.613 kb on - strand, within DZA65_RS07290 at 1516.614 kb on + strand, within DZA65_RS07290 at 1516.614 kb on + strand, within DZA65_RS07290 at 1516.614 kb on + strand, within DZA65_RS07290 at 1516.615 kb on - strand, within DZA65_RS07290 at 1516.615 kb on - strand, within DZA65_RS07290 at 1516.734 kb on + strand, within DZA65_RS07290 at 1516.734 kb on + strand, within DZA65_RS07290 at 1516.735 kb on - strand, within DZA65_RS07290 at 1516.735 kb on - strand, within DZA65_RS07290 at 1516.735 kb on - strand, within DZA65_RS07290 at 1516.735 kb on - strand, within DZA65_RS07290
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 1,513,672 + DZA65_RS07275 0.59 -0.2 1,513,878 + DZA65_RS07275 0.82 +0.4 1,513,878 + DZA65_RS07275 0.82 -0.5 1,513,951 + DZA65_RS07275 0.90 -1.2 1,513,951 + DZA65_RS07275 0.90 -0.7 1,513,951 + DZA65_RS07275 0.90 -1.0 1,513,951 + DZA65_RS07275 0.90 -1.2 1,513,952 - DZA65_RS07275 0.90 +0.0 1,513,952 - DZA65_RS07275 0.90 -0.2 1,513,952 - DZA65_RS07275 0.90 -0.7 1,513,981 + +1.4 1,513,981 + -0.4 1,513,981 + +0.8 1,513,981 + -0.2 1,513,981 + +0.7 1,513,981 + +0.6 1,513,982 - -2.2 1,513,982 - +0.4 1,513,982 - -0.9 1,513,982 - +1.4 1,513,982 - +0.9 1,513,982 - -1.4 1,513,982 - +1.0 1,514,011 + +2.4 1,514,012 - +0.4 1,514,012 - -0.6 1,514,037 + -0.6 1,514,038 - -1.4 1,514,038 - -1.5 1,514,040 + -1.1 1,514,040 + +2.2 1,514,040 + -1.2 1,514,040 + -1.5 1,514,040 + -0.3 1,514,041 - -0.2 1,514,041 - +0.3 1,514,041 - +0.8 1,514,041 - +1.2 1,514,041 - -1.0 1,514,041 - -2.4 1,514,041 - +2.5 1,514,169 + DZA65_RS07280 0.23 +1.1 1,514,169 + DZA65_RS07280 0.23 -1.3 1,514,221 - DZA65_RS07280 0.32 +0.0 1,514,228 + DZA65_RS07280 0.33 +0.2 1,514,229 - DZA65_RS07280 0.33 +0.4 1,514,239 + DZA65_RS07280 0.34 -0.6 1,514,239 + DZA65_RS07280 0.34 +0.2 1,514,253 - DZA65_RS07280 0.37 -1.2 1,514,253 - DZA65_RS07280 0.37 -0.2 1,514,274 - DZA65_RS07280 0.40 -0.9 1,514,274 - DZA65_RS07280 0.40 -0.8 1,514,434 + DZA65_RS07280 0.66 +0.1 1,514,435 - DZA65_RS07280 0.66 +0.2 1,514,435 - DZA65_RS07280 0.66 -0.3 1,514,435 - DZA65_RS07280 0.66 -0.8 1,514,435 - DZA65_RS07280 0.66 +0.7 1,514,456 + DZA65_RS07280 0.70 -0.3 1,514,518 + DZA65_RS07280 0.80 +1.2 1,514,518 + DZA65_RS07280 0.80 +0.9 1,514,519 - DZA65_RS07280 0.80 -0.3 1,514,519 - DZA65_RS07280 0.80 -1.4 1,514,519 - DZA65_RS07280 0.80 -1.3 1,514,563 + DZA65_RS07280 0.87 +0.0 1,514,623 + +0.4 1,514,624 - -0.8 1,514,624 - +0.4 1,514,624 - -0.5 1,514,624 - -0.2 1,514,625 + -0.6 1,514,664 + -0.8 1,514,664 + +0.0 1,514,790 + DZA65_RS07285 0.13 -1.2 1,514,825 + DZA65_RS07285 0.16 +0.2 1,514,826 - DZA65_RS07285 0.16 -0.4 1,514,842 - DZA65_RS07285 0.18 -0.9 1,514,947 - DZA65_RS07285 0.27 +1.4 1,514,953 + DZA65_RS07285 0.27 -0.4 1,514,954 - DZA65_RS07285 0.27 -1.2 1,514,954 - DZA65_RS07285 0.27 -0.6 1,514,975 + DZA65_RS07285 0.29 -0.1 1,514,988 + DZA65_RS07285 0.30 +0.4 1,514,988 + DZA65_RS07285 0.30 -1.5 1,514,989 - DZA65_RS07285 0.30 -2.4 1,514,989 - DZA65_RS07285 0.30 +0.4 1,515,104 + DZA65_RS07285 0.40 -1.0 1,515,104 + DZA65_RS07285 0.40 +0.5 1,515,104 + DZA65_RS07285 0.40 -1.0 1,515,104 + DZA65_RS07285 0.40 +0.2 1,515,105 - DZA65_RS07285 0.40 +1.1 1,515,114 - DZA65_RS07285 0.41 -1.8 1,515,246 + DZA65_RS07285 0.53 -1.6 1,515,260 + DZA65_RS07285 0.54 -0.9 1,515,294 + DZA65_RS07285 0.57 +0.1 1,515,294 + DZA65_RS07285 0.57 -2.0 1,515,294 + DZA65_RS07285 0.57 +1.4 1,515,294 + DZA65_RS07285 0.57 -1.0 1,515,297 + DZA65_RS07285 0.57 -0.0 1,515,297 + DZA65_RS07285 0.57 -0.8 1,515,297 + -0.2 1,515,298 - DZA65_RS07285 0.57 +0.2 1,515,347 + DZA65_RS07285 0.62 -1.2 1,515,347 + DZA65_RS07285 0.62 +0.7 1,515,347 + DZA65_RS07285 0.62 +0.9 1,515,347 + DZA65_RS07285 0.62 -1.1 1,515,347 + DZA65_RS07285 0.62 +0.8 1,515,348 - DZA65_RS07285 0.62 +0.2 1,515,348 - DZA65_RS07285 0.62 +0.4 1,515,348 - DZA65_RS07285 0.62 -0.8 1,515,348 - DZA65_RS07285 0.62 +0.1 1,515,369 - DZA65_RS07285 0.63 -1.2 1,515,432 - DZA65_RS07285 0.69 +0.3 1,515,446 + DZA65_RS07285 0.70 -0.5 1,515,447 - DZA65_RS07285 0.70 +1.2 1,515,447 - DZA65_RS07285 0.70 -0.1 1,515,503 - DZA65_RS07285 0.75 -2.2 1,515,503 - DZA65_RS07285 0.75 +1.5 1,515,559 + DZA65_RS07285 0.80 +0.4 1,515,588 + DZA65_RS07285 0.83 -2.1 1,515,588 + DZA65_RS07285 0.83 +0.4 1,515,588 + DZA65_RS07285 0.83 +0.9 1,515,588 + DZA65_RS07285 0.83 -1.4 1,515,589 - DZA65_RS07285 0.83 -0.2 1,515,591 - DZA65_RS07285 0.83 +0.2 1,515,615 + DZA65_RS07285 0.85 -1.5 1,515,616 - DZA65_RS07285 0.85 -0.8 1,515,616 - DZA65_RS07285 0.85 -0.7 1,515,627 - DZA65_RS07285 0.86 +3.2 1,515,660 + DZA65_RS07285 0.89 +1.6 1,515,660 + DZA65_RS07285 0.89 -0.2 1,515,671 + DZA65_RS07285 0.90 -0.6 1,515,723 - -0.3 1,515,790 - -1.0 1,515,826 + +0.2 1,515,827 - +0.8 1,515,836 - +0.9 1,515,836 - -1.4 1,515,836 - -2.7 1,515,850 - +0.8 1,515,865 + -0.9 1,515,872 + -0.0 1,515,873 - +1.4 1,515,873 - -0.8 1,515,873 - +0.5 1,515,876 - +1.0 1,515,876 - +0.4 1,515,879 + -0.2 1,515,936 + -0.3 1,515,960 - +0.9 1,516,023 - +0.0 1,516,077 - -2.8 1,516,101 - +2.0 1,516,148 - -0.4 1,516,180 - -1.9 1,516,248 + -1.9 1,516,248 + +0.4 1,516,264 + -0.6 1,516,265 - -1.0 1,516,303 - -0.3 1,516,342 + DZA65_RS07290 0.12 -0.4 1,516,343 - DZA65_RS07290 0.12 +0.4 1,516,369 + DZA65_RS07290 0.14 -0.3 1,516,369 + DZA65_RS07290 0.14 -0.3 1,516,369 + DZA65_RS07290 0.14 +0.3 1,516,369 + DZA65_RS07290 0.14 +0.9 1,516,369 + DZA65_RS07290 0.14 +0.6 1,516,369 + DZA65_RS07290 0.14 -1.4 1,516,369 + DZA65_RS07290 0.14 +0.2 1,516,370 - DZA65_RS07290 0.14 -0.9 1,516,370 - DZA65_RS07290 0.14 -0.3 1,516,370 - DZA65_RS07290 0.14 +0.0 1,516,370 - DZA65_RS07290 0.14 +0.4 1,516,370 - DZA65_RS07290 0.14 +0.1 1,516,371 + DZA65_RS07290 0.15 -1.4 1,516,371 + DZA65_RS07290 0.15 -1.2 1,516,371 + DZA65_RS07290 0.15 +0.4 1,516,371 + DZA65_RS07290 0.15 -0.6 1,516,371 + DZA65_RS07290 0.15 -0.3 1,516,371 + DZA65_RS07290 0.15 -0.7 1,516,371 + DZA65_RS07290 0.15 -0.5 1,516,372 - DZA65_RS07290 0.15 +0.4 1,516,372 - DZA65_RS07290 0.15 +0.0 1,516,372 - DZA65_RS07290 0.15 -0.8 1,516,372 - DZA65_RS07290 0.15 +0.2 1,516,372 - DZA65_RS07290 0.15 -1.6 1,516,372 - DZA65_RS07290 0.15 -0.3 1,516,372 - DZA65_RS07290 0.15 -0.3 1,516,376 + DZA65_RS07290 0.15 -0.8 1,516,376 + DZA65_RS07290 0.15 -1.1 1,516,429 + DZA65_RS07290 0.19 +0.4 1,516,429 + DZA65_RS07290 0.19 +0.2 1,516,429 + DZA65_RS07290 0.19 -0.4 1,516,429 + DZA65_RS07290 0.19 +0.2 1,516,430 - DZA65_RS07290 0.19 -0.1 1,516,430 - DZA65_RS07290 0.19 -0.3 1,516,435 - DZA65_RS07290 0.20 -0.9 1,516,499 + DZA65_RS07290 0.24 +0.1 1,516,560 + DZA65_RS07290 0.29 +2.2 1,516,561 - DZA65_RS07290 0.29 -0.1 1,516,612 + DZA65_RS07290 0.33 +0.9 1,516,612 + DZA65_RS07290 0.33 -1.2 1,516,612 + DZA65_RS07290 0.33 -1.5 1,516,613 - DZA65_RS07290 0.33 -0.2 1,516,613 - DZA65_RS07290 0.33 +0.0 1,516,613 - DZA65_RS07290 0.33 +0.2 1,516,613 - DZA65_RS07290 0.33 +0.1 1,516,614 + DZA65_RS07290 0.33 -0.3 1,516,614 + DZA65_RS07290 0.33 -0.9 1,516,614 + DZA65_RS07290 0.33 -0.6 1,516,615 - DZA65_RS07290 0.33 -0.4 1,516,615 - DZA65_RS07290 0.33 -0.3 1,516,734 + DZA65_RS07290 0.43 -1.8 1,516,734 + DZA65_RS07290 0.43 +2.5 1,516,735 - DZA65_RS07290 0.43 +0.8 1,516,735 - DZA65_RS07290 0.43 +0.2 1,516,735 - DZA65_RS07290 0.43 +0.5 1,516,735 - DZA65_RS07290 0.43 +0.3
Or see this region's nucleotide sequence