Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS05465 and DZA65_RS05470 are separated by 141 nucleotides DZA65_RS05470 and DZA65_RS05475 are separated by 213 nucleotides DZA65_RS05475 and DZA65_RS05480 are separated by 183 nucleotides DZA65_RS05480 and DZA65_RS05485 are separated by 9 nucleotides
DZA65_RS05465: DZA65_RS05465 - UMP kinase, at 1,124,163 to 1,124,894
_RS05465
DZA65_RS05470: DZA65_RS05470 - ribosome recycling factor, at 1,125,036 to 1,125,593
_RS05470
DZA65_RS05475: DZA65_RS05475 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 1,125,807 to 1,127,000
_RS05475
DZA65_RS05480: DZA65_RS05480 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 1,127,184 to 1,127,945
_RS05480
DZA65_RS05485: DZA65_RS05485 - phosphatidate cytidylyltransferase, at 1,127,955 to 1,128,812
_RS05485
Position (kb)
1125
1126
1127
1128 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1124.899 kb on + strand at 1124.904 kb on + strand at 1124.909 kb on + strand at 1124.912 kb on + strand at 1124.912 kb on + strand at 1124.912 kb on + strand at 1124.942 kb on + strand at 1124.944 kb on + strand at 1125.777 kb on + strand at 1126.998 kb on + strand at 1127.004 kb on + strand at 1127.004 kb on + strand at 1127.005 kb on - strand at 1127.040 kb on + strand at 1127.040 kb on + strand at 1127.040 kb on + strand at 1127.040 kb on + strand at 1127.042 kb on + strand at 1127.042 kb on + strand at 1127.042 kb on + strand at 1127.069 kb on + strand at 1127.072 kb on + strand at 1127.120 kb on - strand at 1127.148 kb on + strand at 1127.176 kb on + strand at 1127.943 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 1,124,899 + +0.8 1,124,904 + -0.8 1,124,909 + -0.0 1,124,912 + +0.9 1,124,912 + -0.9 1,124,912 + +0.5 1,124,942 + +0.1 1,124,944 + -0.2 1,125,777 + +0.8 1,126,998 + -1.5 1,127,004 + -0.5 1,127,004 + -2.6 1,127,005 - +0.2 1,127,040 + -0.4 1,127,040 + -0.5 1,127,040 + +0.5 1,127,040 + +0.2 1,127,042 + -1.8 1,127,042 + -2.5 1,127,042 + -1.0 1,127,069 + +0.4 1,127,072 + -0.8 1,127,120 - -2.0 1,127,148 + -1.3 1,127,176 + -3.0 1,127,943 + -0.5
Or see this region's nucleotide sequence