Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05475

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS05465 and DZA65_RS05470 are separated by 141 nucleotidesDZA65_RS05470 and DZA65_RS05475 are separated by 213 nucleotidesDZA65_RS05475 and DZA65_RS05480 are separated by 183 nucleotidesDZA65_RS05480 and DZA65_RS05485 are separated by 9 nucleotides DZA65_RS05465: DZA65_RS05465 - UMP kinase, at 1,124,163 to 1,124,894 _RS05465 DZA65_RS05470: DZA65_RS05470 - ribosome recycling factor, at 1,125,036 to 1,125,593 _RS05470 DZA65_RS05475: DZA65_RS05475 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 1,125,807 to 1,127,000 _RS05475 DZA65_RS05480: DZA65_RS05480 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 1,127,184 to 1,127,945 _RS05480 DZA65_RS05485: DZA65_RS05485 - phosphatidate cytidylyltransferase, at 1,127,955 to 1,128,812 _RS05485 Position (kb) 1125 1126 1127 1128Strain fitness (log2 ratio) -3 -2 -1 0 1at 1124.899 kb on + strandat 1124.904 kb on + strandat 1124.909 kb on + strandat 1124.912 kb on + strandat 1124.912 kb on + strandat 1124.912 kb on + strandat 1124.942 kb on + strandat 1124.944 kb on + strandat 1125.777 kb on + strandat 1126.998 kb on + strandat 1127.004 kb on + strandat 1127.004 kb on + strandat 1127.005 kb on - strandat 1127.040 kb on + strandat 1127.040 kb on + strandat 1127.040 kb on + strandat 1127.040 kb on + strandat 1127.042 kb on + strandat 1127.042 kb on + strandat 1127.042 kb on + strandat 1127.069 kb on + strandat 1127.072 kb on + strandat 1127.120 kb on - strandat 1127.148 kb on + strandat 1127.176 kb on + strandat 1127.943 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,124,899 + +0.8
1,124,904 + -0.8
1,124,909 + -0.0
1,124,912 + +0.9
1,124,912 + -0.9
1,124,912 + +0.5
1,124,942 + +0.1
1,124,944 + -0.2
1,125,777 + +0.8
1,126,998 + -1.5
1,127,004 + -0.5
1,127,004 + -2.6
1,127,005 - +0.2
1,127,040 + -0.4
1,127,040 + -0.5
1,127,040 + +0.5
1,127,040 + +0.2
1,127,042 + -1.8
1,127,042 + -2.5
1,127,042 + -1.0
1,127,069 + +0.4
1,127,072 + -0.8
1,127,120 - -2.0
1,127,148 + -1.3
1,127,176 + -3.0
1,127,943 + -0.5

Or see this region's nucleotide sequence