Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02355 and DZA65_RS02360 are separated by 61 nucleotides DZA65_RS02360 and DZA65_RS22790 are separated by 55 nucleotides DZA65_RS22790 and DZA65_RS02365 overlap by 12 nucleotides DZA65_RS02365 and DZA65_RS02370 are separated by 387 nucleotides
DZA65_RS02355: DZA65_RS02355 - 1-aminocyclopropane-1-carboxylate deaminase, at 508,270 to 509,286
_RS02355
DZA65_RS02360: DZA65_RS02360 - winged helix-turn-helix transcriptional regulator, at 509,348 to 509,851
_RS02360
DZA65_RS22790: DZA65_RS22790 - hypothetical protein, at 509,907 to 510,044
_RS22790
DZA65_RS02365: DZA65_RS02365 - chorismate mutase, at 510,033 to 510,566
_RS02365
DZA65_RS02370: DZA65_RS02370 - MFS transporter, at 510,954 to 512,186
_RS02370
Position (kb) 510
511 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 509.149 kb on + strand, within DZA65_RS02355 at 509.149 kb on + strand, within DZA65_RS02355 at 509.149 kb on + strand, within DZA65_RS02355 at 509.149 kb on + strand, within DZA65_RS02355 at 509.150 kb on - strand, within DZA65_RS02355 at 509.150 kb on - strand, within DZA65_RS02355 at 509.150 kb on - strand, within DZA65_RS02355 at 509.224 kb on + strand at 509.225 kb on - strand at 509.225 kb on - strand at 509.225 kb on - strand at 509.260 kb on + strand at 509.261 kb on - strand at 509.261 kb on - strand at 509.261 kb on - strand at 509.261 kb on - strand at 509.266 kb on + strand at 509.266 kb on + strand at 509.266 kb on + strand at 509.267 kb on - strand at 509.267 kb on - strand at 509.267 kb on - strand at 509.267 kb on - strand at 509.267 kb on - strand at 509.268 kb on + strand at 509.268 kb on + strand at 509.268 kb on + strand at 509.269 kb on - strand at 509.269 kb on - strand at 509.349 kb on + strand at 509.350 kb on - strand at 509.350 kb on - strand at 509.411 kb on + strand, within DZA65_RS02360 at 509.429 kb on + strand, within DZA65_RS02360 at 509.429 kb on + strand, within DZA65_RS02360 at 509.429 kb on + strand, within DZA65_RS02360 at 509.429 kb on + strand, within DZA65_RS02360 at 509.430 kb on - strand, within DZA65_RS02360 at 509.430 kb on - strand, within DZA65_RS02360 at 509.430 kb on - strand, within DZA65_RS02360 at 509.430 kb on - strand, within DZA65_RS02360 at 509.490 kb on + strand, within DZA65_RS02360 at 509.490 kb on + strand, within DZA65_RS02360 at 509.490 kb on + strand, within DZA65_RS02360 at 509.490 kb on + strand, within DZA65_RS02360 at 509.491 kb on - strand, within DZA65_RS02360 at 509.491 kb on - strand, within DZA65_RS02360 at 509.491 kb on - strand, within DZA65_RS02360 at 509.524 kb on + strand, within DZA65_RS02360 at 509.524 kb on + strand, within DZA65_RS02360 at 509.525 kb on - strand, within DZA65_RS02360 at 509.639 kb on + strand, within DZA65_RS02360 at 509.640 kb on - strand, within DZA65_RS02360 at 509.640 kb on - strand, within DZA65_RS02360 at 509.652 kb on + strand, within DZA65_RS02360 at 509.652 kb on + strand, within DZA65_RS02360 at 509.652 kb on + strand, within DZA65_RS02360 at 509.652 kb on + strand at 509.652 kb on + strand, within DZA65_RS02360 at 509.652 kb on + strand, within DZA65_RS02360 at 509.652 kb on + strand, within DZA65_RS02360 at 509.652 kb on + strand, within DZA65_RS02360 at 509.652 kb on + strand, within DZA65_RS02360 at 509.653 kb on - strand, within DZA65_RS02360 at 509.653 kb on - strand, within DZA65_RS02360 at 509.653 kb on - strand, within DZA65_RS02360 at 509.653 kb on - strand, within DZA65_RS02360 at 509.669 kb on + strand, within DZA65_RS02360 at 509.669 kb on + strand, within DZA65_RS02360 at 509.669 kb on + strand, within DZA65_RS02360 at 509.669 kb on + strand, within DZA65_RS02360 at 509.669 kb on + strand, within DZA65_RS02360 at 509.670 kb on - strand, within DZA65_RS02360 at 509.670 kb on - strand, within DZA65_RS02360 at 509.670 kb on - strand, within DZA65_RS02360 at 509.670 kb on - strand, within DZA65_RS02360 at 509.687 kb on + strand, within DZA65_RS02360 at 509.687 kb on + strand, within DZA65_RS02360 at 509.713 kb on + strand, within DZA65_RS02360 at 509.769 kb on + strand, within DZA65_RS02360 at 509.769 kb on + strand, within DZA65_RS02360 at 509.878 kb on + strand at 509.878 kb on + strand at 509.878 kb on + strand at 509.879 kb on - strand at 509.939 kb on + strand, within DZA65_RS22790 at 509.942 kb on + strand, within DZA65_RS22790 at 509.942 kb on + strand, within DZA65_RS22790 at 509.943 kb on - strand, within DZA65_RS22790 at 509.943 kb on - strand, within DZA65_RS22790 at 509.949 kb on + strand, within DZA65_RS22790 at 509.950 kb on - strand, within DZA65_RS22790 at 509.999 kb on + strand, within DZA65_RS22790 at 510.000 kb on - strand, within DZA65_RS22790 at 510.034 kb on + strand at 510.034 kb on + strand at 510.034 kb on + strand at 510.034 kb on + strand at 510.035 kb on - strand at 510.035 kb on - strand at 510.042 kb on + strand at 510.042 kb on + strand at 510.042 kb on + strand at 510.043 kb on - strand at 510.043 kb on - strand at 510.120 kb on - strand, within DZA65_RS02365 at 510.201 kb on + strand, within DZA65_RS02365 at 510.202 kb on - strand, within DZA65_RS02365 at 510.202 kb on - strand, within DZA65_RS02365 at 510.202 kb on - strand, within DZA65_RS02365 at 510.202 kb on - strand, within DZA65_RS02365 at 510.393 kb on + strand, within DZA65_RS02365 at 510.445 kb on + strand, within DZA65_RS02365 at 510.446 kb on - strand, within DZA65_RS02365 at 510.453 kb on + strand, within DZA65_RS02365 at 510.453 kb on + strand, within DZA65_RS02365 at 510.453 kb on + strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.454 kb on - strand, within DZA65_RS02365 at 510.466 kb on + strand, within DZA65_RS02365 at 510.466 kb on + strand, within DZA65_RS02365 at 510.466 kb on + strand, within DZA65_RS02365 at 510.561 kb on + strand at 510.561 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.566 kb on + strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.567 kb on - strand at 510.589 kb on + strand at 510.589 kb on + strand at 510.589 kb on + strand at 510.589 kb on + strand at 510.589 kb on + strand at 510.589 kb on + strand at 510.590 kb on - strand at 510.590 kb on - strand at 510.590 kb on - strand at 510.590 kb on - strand at 510.590 kb on - strand at 510.590 kb on - strand at 510.590 kb on - strand at 510.669 kb on + strand at 510.669 kb on + strand at 510.669 kb on + strand at 510.669 kb on + strand at 510.669 kb on + strand at 510.669 kb on + strand at 510.669 kb on + strand at 510.669 kb on + strand at 510.670 kb on - strand at 510.670 kb on - strand at 510.670 kb on - strand at 510.670 kb on - strand at 510.670 kb on - strand at 510.670 kb on - strand at 510.670 kb on - strand at 510.670 kb on - strand at 510.685 kb on + strand at 510.685 kb on + strand at 510.685 kb on + strand at 510.685 kb on + strand at 510.686 kb on - strand at 510.686 kb on - strand at 510.686 kb on - strand at 510.686 kb on - strand at 510.686 kb on - strand at 510.686 kb on - strand at 510.686 kb on - strand at 510.726 kb on + strand at 510.726 kb on + strand at 510.726 kb on + strand at 510.726 kb on + strand at 510.727 kb on - strand at 510.727 kb on - strand at 510.727 kb on - strand at 510.727 kb on - strand at 510.730 kb on + strand at 510.731 kb on - strand at 510.731 kb on - strand at 510.731 kb on - strand at 510.755 kb on - strand at 510.769 kb on + strand at 510.769 kb on + strand at 510.770 kb on - strand at 510.770 kb on - strand at 510.827 kb on + strand at 510.827 kb on + strand at 510.828 kb on - strand at 510.828 kb on - strand at 510.828 kb on - strand at 510.900 kb on + strand at 510.912 kb on + strand at 510.912 kb on + strand at 510.912 kb on + strand at 510.913 kb on - strand at 510.913 kb on - strand at 510.913 kb on - strand at 510.913 kb on - strand at 510.913 kb on - strand at 510.913 kb on - strand at 511.055 kb on + strand at 511.091 kb on - strand, within DZA65_RS02370 at 511.183 kb on + strand, within DZA65_RS02370 at 511.184 kb on - strand, within DZA65_RS02370 at 511.214 kb on + strand, within DZA65_RS02370 at 511.214 kb on + strand, within DZA65_RS02370 at 511.214 kb on + strand, within DZA65_RS02370 at 511.214 kb on + strand, within DZA65_RS02370 at 511.215 kb on - strand, within DZA65_RS02370 at 511.215 kb on - strand, within DZA65_RS02370 at 511.217 kb on + strand, within DZA65_RS02370 at 511.217 kb on + strand, within DZA65_RS02370 at 511.217 kb on + strand, within DZA65_RS02370 at 511.217 kb on + strand, within DZA65_RS02370 at 511.218 kb on - strand, within DZA65_RS02370 at 511.218 kb on - strand, within DZA65_RS02370 at 511.218 kb on - strand, within DZA65_RS02370 at 511.218 kb on - strand, within DZA65_RS02370 at 511.236 kb on - strand, within DZA65_RS02370 at 511.256 kb on - strand, within DZA65_RS02370 at 511.379 kb on - strand, within DZA65_RS02370 at 511.435 kb on + strand, within DZA65_RS02370 at 511.506 kb on - strand, within DZA65_RS02370 at 511.506 kb on - strand, within DZA65_RS02370 at 511.506 kb on - strand, within DZA65_RS02370 at 511.506 kb on - strand, within DZA65_RS02370 at 511.506 kb on - strand, within DZA65_RS02370
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 509,149 + DZA65_RS02355 0.86 -0.3 509,149 + DZA65_RS02355 0.86 +0.4 509,149 + DZA65_RS02355 0.86 +2.1 509,149 + DZA65_RS02355 0.86 -0.3 509,150 - DZA65_RS02355 0.87 +0.6 509,150 - DZA65_RS02355 0.87 -0.3 509,150 - DZA65_RS02355 0.87 -0.5 509,224 + -1.4 509,225 - -1.4 509,225 - +2.1 509,225 - +0.7 509,260 + +0.1 509,261 - -0.7 509,261 - +2.4 509,261 - -0.5 509,261 - -1.5 509,266 + -1.8 509,266 + -1.0 509,266 + +0.0 509,267 - +0.0 509,267 - -0.5 509,267 - -2.4 509,267 - +0.5 509,267 - +1.1 509,268 + +0.9 509,268 + +0.2 509,268 + +0.1 509,269 - -1.5 509,269 - +0.8 509,349 + -0.7 509,350 - -0.2 509,350 - -0.3 509,411 + DZA65_RS02360 0.12 -0.8 509,429 + DZA65_RS02360 0.16 +0.3 509,429 + DZA65_RS02360 0.16 -1.2 509,429 + DZA65_RS02360 0.16 -0.8 509,429 + DZA65_RS02360 0.16 +0.4 509,430 - DZA65_RS02360 0.16 -0.7 509,430 - DZA65_RS02360 0.16 +1.0 509,430 - DZA65_RS02360 0.16 +0.3 509,430 - DZA65_RS02360 0.16 -1.4 509,490 + DZA65_RS02360 0.28 +0.2 509,490 + DZA65_RS02360 0.28 +0.5 509,490 + DZA65_RS02360 0.28 +0.8 509,490 + DZA65_RS02360 0.28 +0.8 509,491 - DZA65_RS02360 0.28 -1.4 509,491 - DZA65_RS02360 0.28 +1.1 509,491 - DZA65_RS02360 0.28 -1.5 509,524 + DZA65_RS02360 0.35 -0.2 509,524 + DZA65_RS02360 0.35 -0.3 509,525 - DZA65_RS02360 0.35 -0.2 509,639 + DZA65_RS02360 0.58 +0.1 509,640 - DZA65_RS02360 0.58 +0.5 509,640 - DZA65_RS02360 0.58 -0.2 509,652 + DZA65_RS02360 0.60 -0.2 509,652 + DZA65_RS02360 0.60 -0.9 509,652 + DZA65_RS02360 0.60 -0.9 509,652 + -0.2 509,652 + DZA65_RS02360 0.60 +0.8 509,652 + DZA65_RS02360 0.60 +0.8 509,652 + DZA65_RS02360 0.60 -0.8 509,652 + DZA65_RS02360 0.60 -0.5 509,652 + DZA65_RS02360 0.60 +1.1 509,653 - DZA65_RS02360 0.61 -0.8 509,653 - DZA65_RS02360 0.61 +0.2 509,653 - DZA65_RS02360 0.61 +0.6 509,653 - DZA65_RS02360 0.61 +1.4 509,669 + DZA65_RS02360 0.64 -1.0 509,669 + DZA65_RS02360 0.64 -1.1 509,669 + DZA65_RS02360 0.64 -0.4 509,669 + DZA65_RS02360 0.64 -0.8 509,669 + DZA65_RS02360 0.64 +0.8 509,670 - DZA65_RS02360 0.64 -1.2 509,670 - DZA65_RS02360 0.64 -1.0 509,670 - DZA65_RS02360 0.64 +0.1 509,670 - DZA65_RS02360 0.64 -1.2 509,687 + DZA65_RS02360 0.67 +0.4 509,687 + DZA65_RS02360 0.67 +0.5 509,713 + DZA65_RS02360 0.72 -1.2 509,769 + DZA65_RS02360 0.84 -1.2 509,769 + DZA65_RS02360 0.84 -2.4 509,878 + +0.1 509,878 + -0.8 509,878 + +1.1 509,879 - +0.8 509,939 + DZA65_RS22790 0.23 +0.5 509,942 + DZA65_RS22790 0.25 -1.2 509,942 + DZA65_RS22790 0.25 +2.4 509,943 - DZA65_RS22790 0.26 +0.4 509,943 - DZA65_RS22790 0.26 -1.8 509,949 + DZA65_RS22790 0.30 -1.2 509,950 - DZA65_RS22790 0.31 -0.5 509,999 + DZA65_RS22790 0.67 +0.3 510,000 - DZA65_RS22790 0.67 -0.4 510,034 + -0.7 510,034 + -2.4 510,034 + -1.4 510,034 + -0.6 510,035 - -0.0 510,035 - -1.0 510,042 + -1.7 510,042 + +0.4 510,042 + +0.8 510,043 - +0.3 510,043 - +0.8 510,120 - DZA65_RS02365 0.16 +0.5 510,201 + DZA65_RS02365 0.31 -0.6 510,202 - DZA65_RS02365 0.32 -0.2 510,202 - DZA65_RS02365 0.32 -1.1 510,202 - DZA65_RS02365 0.32 +0.4 510,202 - DZA65_RS02365 0.32 -0.4 510,393 + DZA65_RS02365 0.67 -1.0 510,445 + DZA65_RS02365 0.77 -1.2 510,446 - DZA65_RS02365 0.77 -0.8 510,453 + DZA65_RS02365 0.79 -0.2 510,453 + DZA65_RS02365 0.79 -0.2 510,453 + DZA65_RS02365 0.79 -0.1 510,454 - DZA65_RS02365 0.79 -0.9 510,454 - DZA65_RS02365 0.79 -0.8 510,454 - DZA65_RS02365 0.79 +0.1 510,454 - DZA65_RS02365 0.79 -0.0 510,454 - DZA65_RS02365 0.79 +0.0 510,454 - DZA65_RS02365 0.79 -0.2 510,454 - DZA65_RS02365 0.79 +0.1 510,454 - DZA65_RS02365 0.79 +0.2 510,454 - DZA65_RS02365 0.79 -0.8 510,454 - DZA65_RS02365 0.79 -1.2 510,454 - DZA65_RS02365 0.79 +0.0 510,454 - DZA65_RS02365 0.79 +0.2 510,466 + DZA65_RS02365 0.81 -1.2 510,466 + DZA65_RS02365 0.81 -1.0 510,466 + DZA65_RS02365 0.81 -0.2 510,561 + -0.5 510,561 + +0.2 510,566 + -1.4 510,566 + +1.5 510,566 + +0.3 510,566 + +0.8 510,566 + -0.1 510,566 + +0.2 510,566 + +0.2 510,566 + +0.1 510,566 + -0.2 510,566 + -0.3 510,566 + +0.0 510,566 + +0.4 510,566 + +0.0 510,567 - -0.3 510,567 - -1.9 510,567 - -0.1 510,567 - -1.5 510,567 - -0.7 510,567 - -0.4 510,567 - -0.5 510,567 - -0.8 510,567 - -0.7 510,567 - -1.5 510,567 - -0.4 510,567 - -0.5 510,589 + -0.9 510,589 + -2.8 510,589 + -1.5 510,589 + +1.0 510,589 + -1.2 510,589 + -0.5 510,590 - +0.4 510,590 - +1.5 510,590 - +1.1 510,590 - -0.1 510,590 - -0.1 510,590 - -1.6 510,590 - +0.2 510,669 + -0.5 510,669 + -1.2 510,669 + +0.1 510,669 + +1.1 510,669 + +0.4 510,669 + -2.0 510,669 + +0.9 510,669 + -1.5 510,670 - +1.3 510,670 - -1.2 510,670 - -0.2 510,670 - +0.9 510,670 - +0.6 510,670 - -1.8 510,670 - +0.3 510,670 - +0.4 510,685 + -0.7 510,685 + +0.2 510,685 + +0.7 510,685 + -0.0 510,686 - +0.3 510,686 - -1.6 510,686 - -0.5 510,686 - -0.5 510,686 - -1.4 510,686 - +0.5 510,686 - -1.2 510,726 + -2.4 510,726 + +0.5 510,726 + -0.5 510,726 + +3.8 510,727 - -0.6 510,727 - -0.1 510,727 - +0.4 510,727 - +0.8 510,730 + +0.4 510,731 - +0.3 510,731 - -1.3 510,731 - -0.7 510,755 - -0.3 510,769 + +0.6 510,769 + +1.3 510,770 - -0.8 510,770 - -0.6 510,827 + -0.2 510,827 + +0.2 510,828 - -1.7 510,828 - +0.8 510,828 - -0.8 510,900 + -0.1 510,912 + +1.4 510,912 + -0.5 510,912 + +1.2 510,913 - -0.3 510,913 - -0.6 510,913 - +0.4 510,913 - -0.7 510,913 - -1.0 510,913 - -0.6 511,055 + -0.2 511,091 - DZA65_RS02370 0.11 +2.4 511,183 + DZA65_RS02370 0.19 -0.0 511,184 - DZA65_RS02370 0.19 +0.1 511,214 + DZA65_RS02370 0.21 -0.2 511,214 + DZA65_RS02370 0.21 +1.1 511,214 + DZA65_RS02370 0.21 +0.2 511,214 + DZA65_RS02370 0.21 +2.1 511,215 - DZA65_RS02370 0.21 +0.1 511,215 - DZA65_RS02370 0.21 -1.8 511,217 + DZA65_RS02370 0.21 -0.8 511,217 + DZA65_RS02370 0.21 +2.1 511,217 + DZA65_RS02370 0.21 -0.1 511,217 + DZA65_RS02370 0.21 +0.5 511,218 - DZA65_RS02370 0.21 -0.7 511,218 - DZA65_RS02370 0.21 +0.8 511,218 - DZA65_RS02370 0.21 -0.8 511,218 - DZA65_RS02370 0.21 -0.5 511,236 - DZA65_RS02370 0.23 +0.0 511,256 - DZA65_RS02370 0.24 +0.2 511,379 - DZA65_RS02370 0.34 -0.9 511,435 + DZA65_RS02370 0.39 -1.6 511,506 - DZA65_RS02370 0.45 +0.4 511,506 - DZA65_RS02370 0.45 -0.0 511,506 - DZA65_RS02370 0.45 +0.2 511,506 - DZA65_RS02370 0.45 +0.0 511,506 - DZA65_RS02370 0.45 -0.2
Or see this region's nucleotide sequence