Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02265

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02260 and DZA65_RS02265 are separated by 44 nucleotidesDZA65_RS02265 and DZA65_RS02270 are separated by 35 nucleotides DZA65_RS02260: DZA65_RS02260 - substrate-binding domain-containing protein, at 490,399 to 491,334 _RS02260 DZA65_RS02265: DZA65_RS02265 - DUF2291 domain-containing protein, at 491,379 to 492,002 _RS02265 DZA65_RS02270: DZA65_RS02270 - sugar ABC transporter ATP-binding protein, at 492,038 to 493,600 _RS02270 Position (kb) 491 492 493Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 490.383 kb on + strandat 490.422 kb on - strandat 490.513 kb on + strand, within DZA65_RS02260at 490.513 kb on + strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.517 kb on - strand, within DZA65_RS02260at 490.517 kb on - strand, within DZA65_RS02260at 490.517 kb on - strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.567 kb on - strand, within DZA65_RS02260at 490.567 kb on - strand, within DZA65_RS02260at 490.643 kb on + strand, within DZA65_RS02260at 490.643 kb on + strand, within DZA65_RS02260at 490.643 kb on + strand, within DZA65_RS02260at 490.644 kb on - strand, within DZA65_RS02260at 490.644 kb on - strand, within DZA65_RS02260at 490.775 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.850 kb on - strand, within DZA65_RS02260at 490.850 kb on - strand, within DZA65_RS02260at 490.850 kb on - strand, within DZA65_RS02260at 490.866 kb on + strand, within DZA65_RS02260at 490.866 kb on + strand, within DZA65_RS02260at 490.867 kb on - strand, within DZA65_RS02260at 490.927 kb on + strand, within DZA65_RS02260at 490.928 kb on - strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.378 kb on + strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.379 kb on - strandat 491.474 kb on + strand, within DZA65_RS02265at 491.744 kb on - strand, within DZA65_RS02265at 491.787 kb on + strand, within DZA65_RS02265at 491.787 kb on + strand, within DZA65_RS02265at 491.787 kb on + strand, within DZA65_RS02265at 491.787 kb on + strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.788 kb on - strand, within DZA65_RS02265at 491.789 kb on + strand, within DZA65_RS02265at 491.790 kb on - strand, within DZA65_RS02265at 491.790 kb on - strand, within DZA65_RS02265at 491.802 kb on + strand, within DZA65_RS02265at 491.803 kb on - strand, within DZA65_RS02265at 491.830 kb on - strand, within DZA65_RS02265at 491.830 kb on - strand, within DZA65_RS02265at 491.830 kb on - strandat 491.830 kb on - strand, within DZA65_RS02265at 491.931 kb on - strand, within DZA65_RS02265at 492.010 kb on + strandat 492.011 kb on - strandat 492.019 kb on - strandat 492.167 kb on + strandat 492.167 kb on + strandat 492.168 kb on - strandat 492.176 kb on + strandat 492.176 kb on + strandat 492.176 kb on + strandat 492.176 kb on + strandat 492.177 kb on - strandat 492.220 kb on + strand, within DZA65_RS02270at 492.220 kb on + strand, within DZA65_RS02270at 492.220 kb on + strand, within DZA65_RS02270at 492.221 kb on - strand, within DZA65_RS02270at 492.497 kb on + strand, within DZA65_RS02270at 492.497 kb on + strand, within DZA65_RS02270at 492.497 kb on + strand, within DZA65_RS02270at 492.498 kb on - strand, within DZA65_RS02270at 492.498 kb on - strand, within DZA65_RS02270at 492.498 kb on - strand, within DZA65_RS02270at 492.499 kb on + strand, within DZA65_RS02270at 492.499 kb on + strand, within DZA65_RS02270at 492.583 kb on + strand, within DZA65_RS02270at 492.583 kb on + strand, within DZA65_RS02270at 492.621 kb on + strand, within DZA65_RS02270at 492.621 kb on + strand, within DZA65_RS02270at 492.622 kb on - strand, within DZA65_RS02270at 492.622 kb on - strand, within DZA65_RS02270at 492.622 kb on - strand, within DZA65_RS02270at 492.622 kb on - strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strandat 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.926 kb on - strand, within DZA65_RS02270at 492.956 kb on + strand, within DZA65_RS02270at 492.956 kb on + strand, within DZA65_RS02270at 492.957 kb on - strand, within DZA65_RS02270at 492.957 kb on - strand, within DZA65_RS02270at 492.957 kb on - strand, within DZA65_RS02270

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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490,383 + -0.7
490,422 - -1.0
490,513 + DZA65_RS02260 0.12 -0.1
490,513 + DZA65_RS02260 0.12 +0.8
490,514 - DZA65_RS02260 0.12 +0.8
490,514 - DZA65_RS02260 0.12 -0.3
490,514 - DZA65_RS02260 0.12 -0.2
490,514 - DZA65_RS02260 0.12 -0.0
490,514 - DZA65_RS02260 0.12 -1.6
490,516 + DZA65_RS02260 0.12 +0.5
490,516 + DZA65_RS02260 0.12 +0.4
490,516 + DZA65_RS02260 0.12 -0.2
490,516 + DZA65_RS02260 0.12 +0.6
490,516 + DZA65_RS02260 0.12 +0.6
490,517 - DZA65_RS02260 0.13 -1.3
490,517 - DZA65_RS02260 0.13 -1.0
490,517 - DZA65_RS02260 0.13 +0.2
490,566 + DZA65_RS02260 0.18 +0.8
490,566 + DZA65_RS02260 0.18 +0.5
490,566 + DZA65_RS02260 0.18 +0.8
490,566 + DZA65_RS02260 0.18 -1.6
490,567 - DZA65_RS02260 0.18 -0.4
490,567 - DZA65_RS02260 0.18 -0.4
490,643 + DZA65_RS02260 0.26 +0.3
490,643 + DZA65_RS02260 0.26 -0.0
490,643 + DZA65_RS02260 0.26 -0.2
490,644 - DZA65_RS02260 0.26 -0.2
490,644 - DZA65_RS02260 0.26 +0.2
490,775 + DZA65_RS02260 0.40 +1.2
490,849 + DZA65_RS02260 0.48 -0.0
490,849 + DZA65_RS02260 0.48 -0.8
490,849 + DZA65_RS02260 0.48 -0.0
490,849 + DZA65_RS02260 0.48 -0.1
490,849 + DZA65_RS02260 0.48 -0.1
490,849 + DZA65_RS02260 0.48 +1.8
490,849 + DZA65_RS02260 0.48 +0.5
490,850 - DZA65_RS02260 0.48 -0.2
490,850 - DZA65_RS02260 0.48 -0.5
490,850 - DZA65_RS02260 0.48 +0.4
490,866 + DZA65_RS02260 0.50 +0.2
490,866 + DZA65_RS02260 0.50 +0.3
490,867 - DZA65_RS02260 0.50 -1.5
490,927 + DZA65_RS02260 0.56 -0.1
490,928 - DZA65_RS02260 0.57 +0.1
491,227 + DZA65_RS02260 0.88 +0.3
491,227 + DZA65_RS02260 0.88 -0.9
491,227 + DZA65_RS02260 0.88 +0.2
491,227 + DZA65_RS02260 0.88 -2.1
491,227 + DZA65_RS02260 0.88 -0.3
491,227 + DZA65_RS02260 0.88 -1.2
491,227 + DZA65_RS02260 0.88 -0.4
491,227 + DZA65_RS02260 0.88 +0.6
491,227 + DZA65_RS02260 0.88 +2.1
491,227 + DZA65_RS02260 0.88 +0.4
491,227 + DZA65_RS02260 0.88 +0.2
491,227 + DZA65_RS02260 0.88 -0.4
491,228 - DZA65_RS02260 0.89 -1.2
491,228 - DZA65_RS02260 0.89 +1.3
491,228 - DZA65_RS02260 0.89 -0.8
491,228 - DZA65_RS02260 0.89 -0.3
491,228 - DZA65_RS02260 0.89 -1.5
491,228 - DZA65_RS02260 0.89 +0.8
491,378 + +1.0
491,378 + +0.2
491,378 + -2.9
491,378 + -2.2
491,378 + -0.8
491,378 + +0.4
491,378 + +1.6
491,378 + +0.4
491,378 + -1.4
491,378 + -1.9
491,378 + +0.4
491,378 + +0.8
491,378 + -0.6
491,378 + -1.5
491,378 + -0.8
491,378 + -1.0
491,379 - -2.8
491,379 - +0.1
491,379 - -2.0
491,379 - +0.1
491,379 - -0.8
491,379 - -0.4
491,379 - -0.5
491,379 - -1.8
491,379 - +0.5
491,379 - -0.4
491,379 - +1.0
491,379 - -0.7
491,474 + DZA65_RS02265 0.15 +0.4
491,744 - DZA65_RS02265 0.58 -2.5
491,787 + DZA65_RS02265 0.65 -0.8
491,787 + DZA65_RS02265 0.65 +0.5
491,787 + DZA65_RS02265 0.65 +0.8
491,787 + DZA65_RS02265 0.65 +0.4
491,788 - DZA65_RS02265 0.66 +0.2
491,788 - DZA65_RS02265 0.66 +0.1
491,788 - DZA65_RS02265 0.66 -1.5
491,788 - DZA65_RS02265 0.66 +1.0
491,788 - DZA65_RS02265 0.66 -1.2
491,789 + DZA65_RS02265 0.66 +0.6
491,790 - DZA65_RS02265 0.66 +1.0
491,790 - DZA65_RS02265 0.66 +0.8
491,802 + DZA65_RS02265 0.68 +0.7
491,803 - DZA65_RS02265 0.68 +0.8
491,830 - DZA65_RS02265 0.72 -0.8
491,830 - DZA65_RS02265 0.72 -0.6
491,830 - +0.8
491,830 - DZA65_RS02265 0.72 +1.1
491,931 - DZA65_RS02265 0.88 -0.3
492,010 + +0.4
492,011 - +0.7
492,019 - +1.7
492,167 + -0.8
492,167 + +1.8
492,168 - -0.3
492,176 + +0.8
492,176 + -0.4
492,176 + -0.1
492,176 + +0.5
492,177 - -0.7
492,220 + DZA65_RS02270 0.12 -0.4
492,220 + DZA65_RS02270 0.12 -1.8
492,220 + DZA65_RS02270 0.12 +0.3
492,221 - DZA65_RS02270 0.12 -1.5
492,497 + DZA65_RS02270 0.29 +0.2
492,497 + DZA65_RS02270 0.29 -0.2
492,497 + DZA65_RS02270 0.29 -0.4
492,498 - DZA65_RS02270 0.29 -0.5
492,498 - DZA65_RS02270 0.29 +0.5
492,498 - DZA65_RS02270 0.29 +0.2
492,499 + DZA65_RS02270 0.29 -0.8
492,499 + DZA65_RS02270 0.29 +1.7
492,583 + DZA65_RS02270 0.35 -0.8
492,583 + DZA65_RS02270 0.35 -2.6
492,621 + DZA65_RS02270 0.37 -0.2
492,621 + DZA65_RS02270 0.37 -0.6
492,622 - DZA65_RS02270 0.37 -2.0
492,622 - DZA65_RS02270 0.37 -1.2
492,622 - DZA65_RS02270 0.37 -2.6
492,622 - DZA65_RS02270 0.37 +1.1
492,677 + DZA65_RS02270 0.41 -1.5
492,677 + DZA65_RS02270 0.41 -0.3
492,677 + DZA65_RS02270 0.41 -0.5
492,677 + DZA65_RS02270 0.41 -0.5
492,677 + DZA65_RS02270 0.41 +0.5
492,677 + DZA65_RS02270 0.41 -0.6
492,677 + DZA65_RS02270 0.41 -1.1
492,678 - DZA65_RS02270 0.41 -0.0
492,678 - +1.4
492,678 - DZA65_RS02270 0.41 +0.7
492,678 - DZA65_RS02270 0.41 -1.2
492,678 - DZA65_RS02270 0.41 -0.2
492,678 - DZA65_RS02270 0.41 -0.9
492,678 - DZA65_RS02270 0.41 +0.3
492,926 - DZA65_RS02270 0.57 +0.6
492,956 + DZA65_RS02270 0.59 -0.0
492,956 + DZA65_RS02270 0.59 -2.0
492,957 - DZA65_RS02270 0.59 +0.2
492,957 - DZA65_RS02270 0.59 -0.3
492,957 - DZA65_RS02270 0.59 +0.8

Or see this region's nucleotide sequence