Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02020 and DZA65_RS02025 are separated by 281 nucleotides DZA65_RS02025 and DZA65_RS02030 are separated by 126 nucleotides
DZA65_RS02020: DZA65_RS02020 - HAMP domain-containing protein, at 442,886 to 444,430
_RS02020
DZA65_RS02025: DZA65_RS02025 - ArgR family transcriptional regulator, at 444,712 to 445,209
_RS02025
DZA65_RS02030: DZA65_RS02030 - YfcC family protein, at 445,336 to 446,739
_RS02030
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 443.803 kb on + strand, within DZA65_RS02020 at 443.803 kb on + strand, within DZA65_RS02020 at 443.804 kb on - strand, within DZA65_RS02020 at 443.804 kb on - strand, within DZA65_RS02020 at 443.927 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 443.939 kb on - strand, within DZA65_RS02020 at 444.091 kb on + strand, within DZA65_RS02020 at 444.107 kb on - strand, within DZA65_RS02020 at 444.242 kb on - strand, within DZA65_RS02020 at 444.439 kb on + strand at 444.460 kb on + strand at 444.460 kb on + strand at 444.460 kb on + strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.461 kb on - strand at 444.468 kb on + strand at 444.469 kb on - strand at 444.469 kb on - strand at 444.572 kb on + strand at 444.572 kb on + strand at 444.573 kb on - strand at 444.573 kb on - strand at 444.573 kb on - strand at 444.573 kb on - strand at 444.573 kb on - strand at 444.629 kb on + strand at 444.629 kb on + strand at 444.630 kb on - strand at 444.630 kb on - strand at 444.630 kb on - strand at 444.630 kb on - strand at 444.630 kb on - strand at 444.675 kb on + strand at 444.675 kb on + strand at 444.675 kb on + strand at 444.675 kb on + strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.676 kb on - strand at 444.713 kb on + strand at 444.713 kb on + strand at 444.713 kb on + strand at 444.713 kb on + strand at 444.714 kb on - strand at 444.714 kb on - strand at 444.714 kb on - strand at 444.714 kb on - strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.720 kb on + strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.721 kb on - strand at 444.722 kb on + strand at 444.722 kb on + strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.723 kb on - strand at 444.744 kb on + strand at 444.745 kb on - strand at 444.745 kb on - strand at 444.763 kb on + strand, within DZA65_RS02025 at 444.763 kb on + strand, within DZA65_RS02025 at 444.763 kb on + strand, within DZA65_RS02025 at 444.764 kb on - strand, within DZA65_RS02025 at 444.764 kb on - strand, within DZA65_RS02025 at 444.764 kb on - strand, within DZA65_RS02025 at 444.764 kb on - strand, within DZA65_RS02025 at 444.832 kb on + strand, within DZA65_RS02025 at 444.832 kb on + strand, within DZA65_RS02025 at 444.832 kb on + strand, within DZA65_RS02025 at 444.832 kb on + strand, within DZA65_RS02025 at 444.833 kb on - strand, within DZA65_RS02025 at 444.833 kb on - strand, within DZA65_RS02025 at 444.833 kb on - strand, within DZA65_RS02025 at 444.833 kb on - strand, within DZA65_RS02025 at 444.907 kb on - strand, within DZA65_RS02025 at 444.918 kb on + strand, within DZA65_RS02025 at 444.918 kb on + strand, within DZA65_RS02025 at 444.919 kb on - strand, within DZA65_RS02025 at 444.919 kb on - strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.931 kb on + strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 444.932 kb on - strand, within DZA65_RS02025 at 445.059 kb on + strand, within DZA65_RS02025 at 445.059 kb on + strand, within DZA65_RS02025 at 445.060 kb on - strand, within DZA65_RS02025 at 445.128 kb on - strand, within DZA65_RS02025 at 445.128 kb on - strand, within DZA65_RS02025 at 445.128 kb on - strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.131 kb on + strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.132 kb on - strand, within DZA65_RS02025 at 445.140 kb on + strand, within DZA65_RS02025 at 445.140 kb on + strand, within DZA65_RS02025 at 445.143 kb on + strand, within DZA65_RS02025 at 445.143 kb on + strand, within DZA65_RS02025 at 445.143 kb on + strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.144 kb on - strand, within DZA65_RS02025 at 445.209 kb on + strand at 445.209 kb on + strand at 445.210 kb on - strand at 445.210 kb on - strand at 445.210 kb on - strand at 445.213 kb on + strand at 445.213 kb on + strand at 445.213 kb on + strand at 445.213 kb on + strand at 445.223 kb on + strand at 445.244 kb on + strand at 445.244 kb on + strand at 445.253 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.261 kb on + strand at 445.262 kb on - strand at 445.265 kb on + strand at 445.265 kb on + strand at 445.281 kb on + strand at 445.282 kb on - strand at 445.291 kb on + strand at 445.291 kb on + strand at 445.293 kb on + strand at 445.293 kb on + strand at 445.293 kb on + strand at 445.293 kb on + strand at 445.294 kb on - strand at 445.294 kb on - strand at 445.294 kb on - strand at 445.294 kb on - strand at 445.337 kb on + strand at 445.337 kb on + strand at 445.420 kb on + strand at 445.420 kb on + strand at 445.420 kb on + strand at 445.421 kb on - strand at 445.424 kb on + strand at 445.424 kb on + strand at 445.424 kb on + strand at 445.425 kb on - strand at 445.425 kb on - strand at 445.425 kb on - strand at 445.476 kb on + strand at 445.477 kb on - strand, within DZA65_RS02030 at 445.508 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.566 kb on + strand, within DZA65_RS02030 at 445.567 kb on - strand, within DZA65_RS02030 at 445.567 kb on - strand, within DZA65_RS02030 at 445.572 kb on + strand, within DZA65_RS02030 at 445.572 kb on + strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.573 kb on - strand, within DZA65_RS02030 at 445.607 kb on - strand, within DZA65_RS02030 at 445.621 kb on + strand, within DZA65_RS02030 at 445.621 kb on + strand, within DZA65_RS02030 at 445.621 kb on + strand at 445.621 kb on + strand, within DZA65_RS02030 at 445.621 kb on + strand, within DZA65_RS02030 at 445.622 kb on - strand, within DZA65_RS02030 at 445.678 kb on + strand, within DZA65_RS02030 at 445.679 kb on - strand, within DZA65_RS02030 at 445.679 kb on - strand, within DZA65_RS02030 at 445.679 kb on - strand, within DZA65_RS02030 at 445.701 kb on + strand, within DZA65_RS02030 at 445.701 kb on + strand, within DZA65_RS02030 at 445.725 kb on + strand, within DZA65_RS02030 at 445.834 kb on + strand, within DZA65_RS02030 at 445.835 kb on - strand, within DZA65_RS02030 at 445.835 kb on - strand, within DZA65_RS02030 at 445.910 kb on + strand, within DZA65_RS02030 at 445.910 kb on + strand, within DZA65_RS02030 at 445.911 kb on - strand, within DZA65_RS02030 at 445.911 kb on - strand, within DZA65_RS02030 at 445.948 kb on + strand, within DZA65_RS02030 at 445.992 kb on + strand, within DZA65_RS02030 at 445.992 kb on + strand, within DZA65_RS02030 at 445.993 kb on - strand, within DZA65_RS02030 at 446.087 kb on + strand, within DZA65_RS02030 at 446.087 kb on + strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.088 kb on - strand, within DZA65_RS02030 at 446.101 kb on + strand at 446.102 kb on - strand, within DZA65_RS02030 at 446.132 kb on - strand, within DZA65_RS02030 at 446.132 kb on - strand, within DZA65_RS02030 at 446.132 kb on - strand, within DZA65_RS02030 at 446.155 kb on + strand, within DZA65_RS02030 at 446.155 kb on + strand, within DZA65_RS02030 at 446.155 kb on + strand, within DZA65_RS02030 at 446.155 kb on + strand, within DZA65_RS02030
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 443,803 + DZA65_RS02020 0.59 -0.7 443,803 + DZA65_RS02020 0.59 +0.3 443,804 - DZA65_RS02020 0.59 +1.1 443,804 - DZA65_RS02020 0.59 -0.1 443,927 - DZA65_RS02020 0.67 -1.1 443,939 - DZA65_RS02020 0.68 -0.1 443,939 - DZA65_RS02020 0.68 -0.1 443,939 - DZA65_RS02020 0.68 +0.1 443,939 - DZA65_RS02020 0.68 +0.2 443,939 - DZA65_RS02020 0.68 +1.4 444,091 + DZA65_RS02020 0.78 -0.6 444,107 - DZA65_RS02020 0.79 +0.1 444,242 - DZA65_RS02020 0.88 +0.0 444,439 + -0.1 444,460 + +0.3 444,460 + -0.7 444,460 + -2.8 444,461 - +0.4 444,461 - -1.7 444,461 - -0.1 444,461 - +0.5 444,461 - -0.4 444,461 - -0.3 444,468 + +0.3 444,469 - -2.0 444,469 - +0.3 444,572 + -0.4 444,572 + +0.4 444,573 - +1.1 444,573 - +0.9 444,573 - -0.3 444,573 - +0.3 444,573 - -1.3 444,629 + -0.7 444,629 + -0.4 444,630 - +0.2 444,630 - -0.8 444,630 - -0.5 444,630 - +0.1 444,630 - -0.1 444,675 + -2.5 444,675 + +0.2 444,675 + -0.3 444,675 + -0.4 444,676 - +0.4 444,676 - +0.9 444,676 - +0.9 444,676 - -0.4 444,676 - -0.1 444,676 - -0.1 444,676 - -0.6 444,676 - -1.1 444,676 - -0.9 444,676 - -1.8 444,676 - -0.0 444,713 + +1.4 444,713 + +0.4 444,713 + -1.5 444,713 + -0.8 444,714 - +0.3 444,714 - +0.3 444,714 - -0.3 444,714 - +0.4 444,720 + -0.1 444,720 + -0.7 444,720 + +1.6 444,720 + +2.9 444,720 + -2.3 444,720 + -0.1 444,720 + -1.5 444,720 + -1.9 444,720 + +0.7 444,721 - +0.3 444,721 - -0.6 444,721 - +0.9 444,721 - +0.1 444,721 - +0.3 444,721 - +0.0 444,721 - +0.6 444,721 - +0.1 444,722 + +1.9 444,722 + -0.1 444,723 - +0.6 444,723 - +2.2 444,723 - -1.9 444,723 - -0.1 444,723 - -0.1 444,723 - +0.6 444,744 + -0.1 444,745 - -0.9 444,745 - +0.3 444,763 + DZA65_RS02025 0.10 -0.9 444,763 + DZA65_RS02025 0.10 +1.7 444,763 + DZA65_RS02025 0.10 -2.1 444,764 - DZA65_RS02025 0.10 +0.1 444,764 - DZA65_RS02025 0.10 +0.4 444,764 - DZA65_RS02025 0.10 +1.6 444,764 - DZA65_RS02025 0.10 -0.6 444,832 + DZA65_RS02025 0.24 -1.5 444,832 + DZA65_RS02025 0.24 +0.4 444,832 + DZA65_RS02025 0.24 -1.1 444,832 + DZA65_RS02025 0.24 -0.3 444,833 - DZA65_RS02025 0.24 -1.5 444,833 - DZA65_RS02025 0.24 +0.5 444,833 - DZA65_RS02025 0.24 -0.1 444,833 - DZA65_RS02025 0.24 -2.1 444,907 - DZA65_RS02025 0.39 -0.1 444,918 + DZA65_RS02025 0.41 +0.3 444,918 + DZA65_RS02025 0.41 -1.4 444,919 - DZA65_RS02025 0.42 -0.7 444,919 - DZA65_RS02025 0.42 +0.9 444,931 + DZA65_RS02025 0.44 -0.1 444,931 + DZA65_RS02025 0.44 -1.1 444,931 + DZA65_RS02025 0.44 -0.4 444,931 + DZA65_RS02025 0.44 -0.4 444,931 + DZA65_RS02025 0.44 +0.1 444,931 + DZA65_RS02025 0.44 -0.1 444,931 + DZA65_RS02025 0.44 +0.5 444,931 + DZA65_RS02025 0.44 +0.9 444,931 + DZA65_RS02025 0.44 -1.7 444,931 + DZA65_RS02025 0.44 +0.9 444,931 + DZA65_RS02025 0.44 -1.1 444,932 - DZA65_RS02025 0.44 +1.4 444,932 - DZA65_RS02025 0.44 -0.1 444,932 - DZA65_RS02025 0.44 +1.3 444,932 - DZA65_RS02025 0.44 -0.3 444,932 - DZA65_RS02025 0.44 -0.8 444,932 - DZA65_RS02025 0.44 +0.3 444,932 - DZA65_RS02025 0.44 -0.7 444,932 - DZA65_RS02025 0.44 -0.7 444,932 - DZA65_RS02025 0.44 -0.1 444,932 - DZA65_RS02025 0.44 -0.6 445,059 + DZA65_RS02025 0.70 +0.0 445,059 + DZA65_RS02025 0.70 +0.5 445,060 - DZA65_RS02025 0.70 -0.6 445,128 - DZA65_RS02025 0.84 +1.9 445,128 - DZA65_RS02025 0.84 -0.5 445,128 - DZA65_RS02025 0.84 +0.2 445,131 + DZA65_RS02025 0.84 -0.1 445,131 + DZA65_RS02025 0.84 -0.5 445,131 + DZA65_RS02025 0.84 -0.3 445,131 + DZA65_RS02025 0.84 +0.1 445,131 + DZA65_RS02025 0.84 -0.1 445,131 + DZA65_RS02025 0.84 +0.0 445,131 + DZA65_RS02025 0.84 -2.8 445,131 + DZA65_RS02025 0.84 +0.3 445,131 + DZA65_RS02025 0.84 +0.9 445,132 - DZA65_RS02025 0.84 +0.3 445,132 - DZA65_RS02025 0.84 +0.9 445,132 - DZA65_RS02025 0.84 -2.8 445,132 - DZA65_RS02025 0.84 -1.6 445,132 - DZA65_RS02025 0.84 -1.5 445,140 + DZA65_RS02025 0.86 +2.9 445,140 + DZA65_RS02025 0.86 -0.6 445,143 + DZA65_RS02025 0.87 -1.0 445,143 + DZA65_RS02025 0.87 -0.0 445,143 + DZA65_RS02025 0.87 -0.9 445,144 - DZA65_RS02025 0.87 -0.4 445,144 - DZA65_RS02025 0.87 -2.1 445,144 - DZA65_RS02025 0.87 +2.4 445,144 - DZA65_RS02025 0.87 -1.1 445,144 - DZA65_RS02025 0.87 -2.7 445,209 + +0.7 445,209 + -0.7 445,210 - -1.5 445,210 - +0.1 445,210 - +0.9 445,213 + -0.7 445,213 + -0.5 445,213 + -2.3 445,213 + -0.1 445,223 + -0.0 445,244 + +0.6 445,244 + +0.6 445,253 + +0.9 445,261 + +0.9 445,261 + -1.1 445,261 + -0.8 445,261 + -1.1 445,261 + -1.9 445,261 + -0.5 445,261 + +0.4 445,261 + +0.8 445,261 + +0.3 445,262 - -1.5 445,265 + -0.4 445,265 + -2.3 445,281 + -2.6 445,282 - -0.7 445,291 + -0.8 445,291 + +0.4 445,293 + -1.1 445,293 + +0.3 445,293 + -1.1 445,293 + -1.9 445,294 - -1.9 445,294 - +0.4 445,294 - -0.5 445,294 - +0.5 445,337 + -0.7 445,337 + +1.1 445,420 + -0.4 445,420 + +0.0 445,420 + -0.5 445,421 - -0.7 445,424 + -0.0 445,424 + -0.6 445,424 + -0.9 445,425 - -0.1 445,425 - +0.0 445,425 - -0.5 445,476 + -0.3 445,477 - DZA65_RS02030 0.10 -1.5 445,508 + DZA65_RS02030 0.12 -1.6 445,566 + DZA65_RS02030 0.16 +1.3 445,566 + DZA65_RS02030 0.16 +0.5 445,566 + DZA65_RS02030 0.16 -0.7 445,566 + DZA65_RS02030 0.16 -0.2 445,566 + DZA65_RS02030 0.16 -1.1 445,566 + DZA65_RS02030 0.16 +0.6 445,566 + DZA65_RS02030 0.16 +1.4 445,567 - DZA65_RS02030 0.16 -0.9 445,567 - DZA65_RS02030 0.16 -0.5 445,572 + DZA65_RS02030 0.17 -0.6 445,572 + DZA65_RS02030 0.17 +0.1 445,573 - DZA65_RS02030 0.17 -0.9 445,573 - DZA65_RS02030 0.17 -0.1 445,573 - DZA65_RS02030 0.17 -0.0 445,573 - DZA65_RS02030 0.17 +1.2 445,573 - DZA65_RS02030 0.17 +1.4 445,573 - DZA65_RS02030 0.17 +0.1 445,607 - DZA65_RS02030 0.19 -1.6 445,621 + DZA65_RS02030 0.20 -0.6 445,621 + DZA65_RS02030 0.20 +0.5 445,621 + +1.9 445,621 + DZA65_RS02030 0.20 +0.3 445,621 + DZA65_RS02030 0.20 -1.5 445,622 - DZA65_RS02030 0.20 +0.5 445,678 + DZA65_RS02030 0.24 -0.1 445,679 - DZA65_RS02030 0.24 -1.5 445,679 - DZA65_RS02030 0.24 -0.5 445,679 - DZA65_RS02030 0.24 -0.9 445,701 + DZA65_RS02030 0.26 -0.9 445,701 + DZA65_RS02030 0.26 -0.0 445,725 + DZA65_RS02030 0.28 +0.4 445,834 + DZA65_RS02030 0.35 +1.2 445,835 - DZA65_RS02030 0.36 -0.1 445,835 - DZA65_RS02030 0.36 +2.4 445,910 + DZA65_RS02030 0.41 -0.5 445,910 + DZA65_RS02030 0.41 +1.2 445,911 - DZA65_RS02030 0.41 -0.6 445,911 - DZA65_RS02030 0.41 -3.1 445,948 + DZA65_RS02030 0.44 +0.7 445,992 + DZA65_RS02030 0.47 -0.5 445,992 + DZA65_RS02030 0.47 -0.5 445,993 - DZA65_RS02030 0.47 -0.9 446,087 + DZA65_RS02030 0.53 -0.4 446,087 + DZA65_RS02030 0.53 -2.3 446,088 - DZA65_RS02030 0.54 -0.6 446,088 - DZA65_RS02030 0.54 -0.9 446,088 - DZA65_RS02030 0.54 +0.9 446,088 - DZA65_RS02030 0.54 -0.5 446,088 - DZA65_RS02030 0.54 -0.7 446,088 - DZA65_RS02030 0.54 +0.6 446,101 + -0.7 446,102 - DZA65_RS02030 0.55 -1.5 446,132 - DZA65_RS02030 0.57 -2.3 446,132 - DZA65_RS02030 0.57 +0.1 446,132 - DZA65_RS02030 0.57 +0.1 446,155 + DZA65_RS02030 0.58 +0.1 446,155 + DZA65_RS02030 0.58 +0.7 446,155 + DZA65_RS02030 0.58 +1.5 446,155 + DZA65_RS02030 0.58 -0.7
Or see this region's nucleotide sequence