Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22365

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,837,995	+		DZA65_RS22360	0.52	-1.4
4,837,995	+		DZA65_RS22360	0.52	-1.0
4,837,995	+		DZA65_RS22360	0.52	-1.2
4,837,996	-		DZA65_RS22360	0.52	-1.4
4,837,996	-		DZA65_RS22360	0.52	-2.1
4,837,996	-		DZA65_RS22360	0.52	-0.7
4,838,019	+		DZA65_RS22360	0.53	+0.1
4,838,019	+		DZA65_RS22360	0.53	-1.7
4,838,019	+		DZA65_RS22360	0.53	-1.5
4,838,019	+		DZA65_RS22360	0.53	-1.2
4,838,019	+		DZA65_RS22360	0.53	-0.1
4,838,020	-		DZA65_RS22360	0.53	-2.2
4,838,020	-		DZA65_RS22360	0.53	-1.2
4,838,036	-		DZA65_RS22360	0.54	-3.2
4,838,047	+				-0.5
4,838,053	+		DZA65_RS22360	0.55	-0.9
4,838,097	+		DZA65_RS22360	0.57	+0.1
4,838,136	+		DZA65_RS22360	0.59	-0.7
4,838,239	+		DZA65_RS22360	0.65	-0.8
4,838,239	+		DZA65_RS22360	0.65	+0.9
4,838,239	+		DZA65_RS22360	0.65	-1.2
4,838,239	+		DZA65_RS22360	0.65	-0.1
4,838,239	+		DZA65_RS22360	0.65	-1.2
4,838,240	-		DZA65_RS22360	0.65	-0.5
4,838,269	-		DZA65_RS22360	0.66	+0.3
4,838,269	-		DZA65_RS22360	0.66	-2.2
4,838,269	-		DZA65_RS22360	0.66	-0.8
4,838,295	+		DZA65_RS22360	0.68	+0.1
4,838,295	+		DZA65_RS22360	0.68	+0.3
4,838,295	+		DZA65_RS22360	0.68	-1.7
4,838,295	+		DZA65_RS22360	0.68	-2.2
4,838,295	+				-0.5
4,838,295	+		DZA65_RS22360	0.68	-2.1
4,838,295	+		DZA65_RS22360	0.68	-1.5
4,838,295	+		DZA65_RS22360	0.68	+1.1
4,838,295	+		DZA65_RS22360	0.68	-0.4
4,838,295	+		DZA65_RS22360	0.68	-0.2
4,838,295	+		DZA65_RS22360	0.68	+2.1
4,838,295	+		DZA65_RS22360	0.68	-1.7
4,838,295	+		DZA65_RS22360	0.68	+0.1
4,838,295	+		DZA65_RS22360	0.68	-1.4
4,838,295	+		DZA65_RS22360	0.68	-0.9
4,838,296	-		DZA65_RS22360	0.68	-3.0
4,838,296	-		DZA65_RS22360	0.68	+1.4
4,838,296	-		DZA65_RS22360	0.68	-1.7
4,838,296	-		DZA65_RS22360	0.68	-1.7
4,838,296	-		DZA65_RS22360	0.68	-1.2
4,838,296	-		DZA65_RS22360	0.68	-0.9
4,838,296	-				-1.7
4,838,296	-		DZA65_RS22360	0.68	-0.7
4,838,301	+		DZA65_RS22360	0.68	+0.7
4,838,301	+		DZA65_RS22360	0.68	-0.5
4,838,301	+		DZA65_RS22360	0.68	-2.1
4,838,302	-		DZA65_RS22360	0.68	-1.2
4,838,341	-		DZA65_RS22360	0.70	-1.2
4,838,366	+		DZA65_RS22360	0.71	-2.1
4,838,366	+		DZA65_RS22360	0.71	+0.5
4,838,366	+		DZA65_RS22360	0.71	-0.7
4,838,367	-				-0.5
4,838,378	+		DZA65_RS22360	0.72	-1.2
4,838,378	+		DZA65_RS22360	0.72	+0.5
4,838,378	+		DZA65_RS22360	0.72	-1.2
4,838,379	-		DZA65_RS22360	0.72	-1.7
4,838,489	+		DZA65_RS22360	0.78	-1.5
4,838,489	+		DZA65_RS22360	0.78	-0.3
4,838,489	+		DZA65_RS22360	0.78	-0.5
4,838,490	-		DZA65_RS22360	0.78	+2.1
4,838,552	+		DZA65_RS22360	0.81	+1.1
4,838,552	+		DZA65_RS22360	0.81	-0.5
4,838,572	+		DZA65_RS22360	0.82	+0.2
4,838,572	+				-0.5
4,838,573	-		DZA65_RS22360	0.82	-0.6
4,838,656	+		DZA65_RS22360	0.87	-1.2
4,838,656	+		DZA65_RS22360	0.87	+0.3
4,838,656	+		DZA65_RS22360	0.87	+1.1
4,838,656	+		DZA65_RS22360	0.87	-1.4
4,838,657	-		DZA65_RS22360	0.87	-0.5
4,838,657	-		DZA65_RS22360	0.87	-0.4
4,838,657	-		DZA65_RS22360	0.87	+1.1
4,838,657	-		DZA65_RS22360	0.87	-0.2
4,838,665	+		DZA65_RS22360	0.87	+1.6
4,838,665	+				-1.2
4,838,665	+				+0.5
4,838,665	+		DZA65_RS22360	0.87	-0.9
4,838,665	+		DZA65_RS22360	0.87	-1.2
4,838,666	-		DZA65_RS22360	0.87	-1.9
4,838,666	-		DZA65_RS22360	0.87	-0.9
4,838,668	-		DZA65_RS22360	0.87	-0.7
4,838,702	+		DZA65_RS22360	0.89	-0.2
4,838,702	+		DZA65_RS22360	0.89	+0.8
4,838,702	+		DZA65_RS22360	0.89	-3.1
4,838,702	+		DZA65_RS22360	0.89	-1.3
4,838,702	+		DZA65_RS22360	0.89	-0.7
4,838,702	+		DZA65_RS22360	0.89	-2.2
4,838,702	+		DZA65_RS22360	0.89	+0.0
4,838,702	+		DZA65_RS22360	0.89	+0.5
4,838,702	+		DZA65_RS22360	0.89	-1.1
4,838,702	+		DZA65_RS22360	0.89	-1.2
4,838,702	+		DZA65_RS22360	0.89	-0.5
4,838,702	+		DZA65_RS22360	0.89	-1.4
4,838,702	+		DZA65_RS22360	0.89	-1.7
4,838,702	+		DZA65_RS22360	0.89	-1.5
4,838,702	+		DZA65_RS22360	0.89	+1.3
4,838,703	-				+1.1
4,838,703	-				-0.5
4,838,703	-		DZA65_RS22360	0.89	-1.5
4,838,703	-		DZA65_RS22360	0.89	-1.4
4,838,703	-		DZA65_RS22360	0.89	-1.4
4,838,823	+				-2.2
4,838,823	+				-2.1
4,838,824	-				-1.0
4,838,883	+				+0.2
4,838,883	+				+1.2
4,838,883	+				+0.8
4,838,883	+				+0.7
4,838,883	+				-0.4
4,838,883	+				-1.7
4,838,883	+				+1.1
4,838,883	+				+1.6
4,838,884	-				-0.9
4,838,884	-				-0.4
4,838,884	-				-1.5
4,838,884	-				+1.7
4,838,884	-				+0.3
4,838,884	-				-2.0
4,838,884	-				-0.9
4,838,912	+				+1.1
4,838,919	+				+0.1
4,838,919	+				-0.7
4,838,919	+				+0.1
4,838,919	+				-0.2
4,838,919	+				-1.7
4,838,920	-				+1.1
4,838,920	-				-0.5
4,838,920	-				+0.1
4,838,998	+				-0.2
4,838,998	+				+0.5
4,838,998	+				-0.5
4,839,021	+				-0.5
4,839,021	+				+0.1
4,839,022	-				-0.8
4,839,022	-				-0.1
4,839,059	+		DZA65_RS22365	0.13	+0.6
4,839,059	+		DZA65_RS22365	0.13	-0.5
4,839,059	+		DZA65_RS22365	0.13	-0.5
4,839,059	+		DZA65_RS22365	0.13	-1.5
4,839,059	+		DZA65_RS22365	0.13	-0.5
4,839,059	+		DZA65_RS22365	0.13	-0.9
4,839,060	-		DZA65_RS22365	0.13	-0.9
4,839,060	-		DZA65_RS22365	0.13	+1.2
4,839,060	-		DZA65_RS22365	0.13	+0.4
4,839,060	-		DZA65_RS22365	0.13	+0.1
4,839,060	-		DZA65_RS22365	0.13	+1.1
4,839,060	-		DZA65_RS22365	0.13	-0.9
4,839,060	-		DZA65_RS22365	0.13	-0.2
4,839,060	-		DZA65_RS22365	0.13	+0.2
4,839,060	-		DZA65_RS22365	0.13	-0.1
4,839,069	+		DZA65_RS22365	0.14	-1.0
4,839,070	-		DZA65_RS22365	0.14	+0.3
4,839,086	-		DZA65_RS22365	0.17	-0.9
4,839,086	-		DZA65_RS22365	0.17	+2.1
4,839,092	+		DZA65_RS22365	0.18	-1.9
4,839,092	+		DZA65_RS22365	0.18	+0.1
4,839,092	+		DZA65_RS22365	0.18	+1.5
4,839,092	+		DZA65_RS22365	0.18	-0.3
4,839,092	+		DZA65_RS22365	0.18	-2.1
4,839,092	+		DZA65_RS22365	0.18	-0.7
4,839,092	+		DZA65_RS22365	0.18	+0.7
4,839,093	-		DZA65_RS22365	0.18	-0.3
4,839,093	-		DZA65_RS22365	0.18	-0.9
4,839,093	-		DZA65_RS22365	0.18	-0.5
4,839,093	-		DZA65_RS22365	0.18	-0.9
4,839,093	-		DZA65_RS22365	0.18	-1.2
4,839,093	-		DZA65_RS22365	0.18	-0.7
4,839,094	+		DZA65_RS22365	0.18	+0.5
4,839,094	+		DZA65_RS22365	0.18	+0.5
4,839,108	+		DZA65_RS22365	0.20	-0.1
4,839,108	+		DZA65_RS22365	0.20	-1.2
4,839,108	+		DZA65_RS22365	0.20	+1.1
4,839,109	-		DZA65_RS22365	0.21	+0.1
4,839,109	-		DZA65_RS22365	0.21	+0.6
4,839,140	-		DZA65_RS22365	0.26	-1.7
4,839,140	-		DZA65_RS22365	0.26	+0.1
4,839,140	-		DZA65_RS22365	0.26	+0.1
4,839,140	-		DZA65_RS22365	0.26	-1.1
4,839,140	-		DZA65_RS22365	0.26	-1.1
4,839,187	+		DZA65_RS22365	0.33	-0.7
4,839,187	+		DZA65_RS22365	0.33	-0.7
4,839,188	-		DZA65_RS22365	0.33	+1.0
4,839,339	+		DZA65_RS22365	0.58	-0.9
4,839,339	+		DZA65_RS22365	0.58	-1.2
4,839,340	-		DZA65_RS22365	0.58	-1.5
4,839,340	-		DZA65_RS22365	0.58	-2.1
4,839,419	-		DZA65_RS22365	0.71	-0.1
4,839,467	+		DZA65_RS22365	0.78	+0.6
4,839,467	+		DZA65_RS22365	0.78	+0.5
4,839,467	+		DZA65_RS22365	0.78	+0.1
4,839,467	+		DZA65_RS22365	0.78	+0.4
4,839,467	+		DZA65_RS22365	0.78	-1.2
4,839,467	+		DZA65_RS22365	0.78	-0.4
4,839,467	+		DZA65_RS22365	0.78	-0.2
4,839,467	+		DZA65_RS22365	0.78	-1.2
4,839,467	+		DZA65_RS22365	0.78	-1.2
4,839,467	+		DZA65_RS22365	0.78	-0.7
4,839,467	+		DZA65_RS22365	0.78	+0.4
4,839,467	+		DZA65_RS22365	0.78	-0.6
4,839,467	+		DZA65_RS22365	0.78	-1.1
4,839,467	+		DZA65_RS22365	0.78	+0.1
4,839,467	+		DZA65_RS22365	0.78	+2.1
4,839,467	+		DZA65_RS22365	0.78	-0.9
4,839,468	-		DZA65_RS22365	0.78	+0.8
4,839,468	-		DZA65_RS22365	0.78	+0.1
4,839,468	-		DZA65_RS22365	0.78	-2.2
4,839,468	-		DZA65_RS22365	0.78	+0.4
4,839,468	-		DZA65_RS22365	0.78	-0.8
4,839,589	+				-0.0
4,839,589	+				+0.1
4,839,589	+				+0.2
4,839,589	+				+0.3
4,839,589	+				-0.2
4,839,589	+				+1.5
4,839,589	+				+1.3
4,839,589	+				+0.3
4,839,589	+				-1.3
4,839,589	+				-2.8
4,839,589	+				+1.3
4,839,589	+				+0.1
4,839,589	+				+2.4
4,839,590	-				+0.2
4,839,590	-				+1.1
4,839,590	-				+0.6
4,839,590	-				+0.1
4,839,590	-				+0.4
4,839,590	-				-0.5
4,839,590	-				-0.5
4,839,590	-				-2.4
4,839,590	-				+0.9
4,839,590	-				+0.4
4,839,590	-				+0.9
4,839,590	-				+0.9
4,839,612	+				-0.7
4,839,613	-				+0.7
4,839,630	+				+0.1
4,839,630	+				+0.1
4,839,630	+				+0.6
4,839,630	+				-2.6
4,839,631	-				+0.4
4,839,631	-				-0.4
4,839,631	-				+1.2
4,839,631	-				+0.3
4,839,631	-				+0.6
4,839,631	-				-1.1
4,839,631	-				-0.5
4,839,653	+				+0.2
4,839,653	+				+0.5
4,839,657	+				+1.1
4,839,657	+				+0.1
4,839,669	-				-1.5
4,839,676	+				-1.5
4,839,676	+				-1.7
4,839,676	+				-0.2
4,839,677	-				+0.6
4,839,677	-				+0.1
4,839,677	-				-0.7
4,839,677	-				-0.2
4,839,677	-				+1.5
4,839,677	-				+1.4
4,839,677	-				+1.7
4,839,681	-				+0.6
4,839,681	-				+1.1
4,839,718	+				-0.3
4,839,718	+				+1.3
4,839,719	-				-0.1
4,839,719	-				-0.9
4,839,719	-				-0.4
4,839,719	-				-0.9
4,839,719	-				-0.1
4,839,771	+				-0.9
4,839,772	-				-0.4
4,839,777	+				-0.2
4,839,777	+				+1.3
4,839,839	-				-0.9
4,839,856	+				+0.4
4,839,856	+				+0.4
4,839,857	-				-0.1
4,839,857	-				-1.2
4,839,910	+				-1.5
4,839,910	+				+0.1
4,839,911	-				+1.8
4,839,953	+				+1.0
4,839,953	+				+0.6
4,839,954	-				-0.7
4,839,954	-				-0.7
4,839,954	-				-0.2
4,839,954	-				+0.4
4,839,954	-				+0.1
4,839,954	-				-1.0
4,839,954	-				+1.4
4,839,954	-				+0.4
4,839,954	-				-1.7
4,839,955	+				+0.4
4,839,955	+				-0.9
4,839,955	+				+0.1
4,839,956	-				-0.3
4,839,961	+				-1.2
4,839,962	-				-2.2
4,839,962	-				+1.2
4,839,986	+				+0.2
4,839,986	+				-2.4
4,839,986	+				-1.1
4,839,987	-				-0.5
4,840,053	+				-0.8
4,840,100	+				+1.3
4,840,130	+				-0.8
4,840,130	+				+0.3
4,840,161	+				-0.7
4,840,178	+				-1.7
4,840,178	+				-1.0
4,840,178	+				-1.9
4,840,178	+				-0.5
4,840,180	+				+0.9
4,840,195	+				+2.7
4,840,195	+				+0.1
4,840,195	+				+1.1
4,840,195	+				+0.1
4,840,195	+				+1.4
4,840,195	+				-0.1
4,840,195	+				-0.1
4,840,195	+				+2.4
4,840,209	+				+0.4
4,840,209	+				+1.9
4,840,230	+				-0.9
4,840,238	+				-0.5
4,840,238	+				-0.1
4,840,278	+		DZA65_RS22370	0.14	-0.3
4,840,310	+		DZA65_RS22370	0.23	-0.2
4,840,386	+		DZA65_RS22370	0.42	-0.9
4,840,386	+		DZA65_RS22370	0.42	-0.9
4,840,386	+		DZA65_RS22370	0.42	+0.4
4,840,386	+		DZA65_RS22370	0.42	-1.4
4,840,386	+		DZA65_RS22370	0.42	+0.2
4,840,386	+		DZA65_RS22370	0.42	+0.1
4,840,386	+		DZA65_RS22370	0.42	+0.4
4,840,509	+		DZA65_RS22370	0.74	+0.4
4,840,544	+		DZA65_RS22370	0.84	+0.2
4,840,544	+		DZA65_RS22370	0.84	+1.1
4,840,544	+		DZA65_RS22370	0.84	-1.2
4,840,544	+		DZA65_RS22370	0.84	-0.4
4,840,544	+		DZA65_RS22370	0.84	+0.7
4,840,544	+		DZA65_RS22370	0.84	+0.3
4,840,544	+		DZA65_RS22370	0.84	+1.3
4,840,544	+		DZA65_RS22370	0.84	-1.2
4,840,544	+		DZA65_RS22370	0.84	-0.4
4,840,548	+		DZA65_RS22370	0.85	+0.1
4,840,548	+		DZA65_RS22370	0.85	-0.9
4,840,548	+		DZA65_RS22370	0.85	-1.5
4,840,548	+		DZA65_RS22370	0.85	-0.5
4,840,548	+		DZA65_RS22370	0.85	+0.8
4,840,548	+		DZA65_RS22370	0.85	+0.8
4,840,548	+		DZA65_RS22370	0.85	-1.9
4,840,548	+		DZA65_RS22370	0.85	-1.0
4,840,548	+		DZA65_RS22370	0.85	-1.5
4,840,548	+		DZA65_RS22370	0.85	-1.2
4,840,584	+				-0.0
4,840,584	+				+1.4
4,840,584	+				-0.1
4,840,600	+				+0.2
4,840,600	+				-0.2
4,840,600	+				-0.9
4,840,600	+				+0.6
4,840,600	+				-0.5
4,840,600	+				-1.2
4,840,600	+				-0.3
4,840,600	+				-0.9