Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22330

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,827,929	+		DZA65_RS22320	0.70	-0.3
4,827,930	-		DZA65_RS22320	0.71	+0.1
4,827,994	+		DZA65_RS22320	0.86	-0.2
4,827,994	+		DZA65_RS22320	0.86	-0.1
4,827,995	-		DZA65_RS22320	0.87	-1.2
4,827,995	-		DZA65_RS22320	0.87	-0.3
4,827,995	-		DZA65_RS22320	0.87	+0.8
4,828,011	+				-1.1
4,828,011	+				-2.0
4,828,011	+				-1.7
4,828,012	-				+0.7
4,828,032	+				-0.7
4,828,032	+				-0.2
4,828,032	+				-0.0
4,828,032	+				-0.2
4,828,033	-				-0.5
4,828,033	-				+2.5
4,828,033	-				-0.6
4,828,033	-				-1.1
4,828,033	-				+3.3
4,828,033	-				-0.3
4,828,033	-				-0.7
4,828,033	-				-0.2
4,828,067	+				-1.5
4,828,067	+				+0.7
4,828,067	+				-0.9
4,828,067	+				+5.0
4,828,067	+				+3.6
4,828,067	+				+0.3
4,828,067	+				-1.9
4,828,067	+				-1.0
4,828,067	+				+0.1
4,828,067	+				+1.1
4,828,067	+				+0.1
4,828,067	+				+0.6
4,828,067	+				-0.6
4,828,067	+				+0.3
4,828,067	+				-0.4
4,828,068	-				-2.1
4,828,068	-				+1.1
4,828,068	-				+1.4
4,828,068	-				+0.7
4,828,068	-				+0.7
4,828,068	-				+0.3
4,828,068	-				-0.5
4,828,068	-				-0.6
4,828,068	-				+0.5
4,828,104	+				+0.1
4,828,105	-				-0.9
4,828,105	-				-1.7
4,828,120	+				+1.1
4,828,120	+				+1.1
4,828,131	+				-1.7
4,828,132	-				+0.9
4,828,132	-				+0.3
4,828,154	+				-0.7
4,828,154	+				-0.2
4,828,154	+				-0.7
4,828,155	-				+0.0
4,828,155	-				+1.3
4,828,159	-				-0.3
4,828,200	+				-0.8
4,828,200	+				+0.3
4,828,200	+				-0.6
4,828,201	-				-1.2
4,828,201	-				-0.3
4,828,201	-				-0.7
4,828,219	+				-0.5
4,828,219	+				-0.5
4,828,219	+				-0.7
4,828,219	+				-0.7
4,828,219	+				-0.3
4,828,219	+				+0.8
4,828,220	-				+0.3
4,828,220	-				+0.8
4,828,220	-				+0.4
4,828,220	-				-1.2
4,828,220	-				+0.5
4,828,220	-				-0.2
4,828,224	+				+1.4
4,828,224	+				-0.1
4,828,224	+				+0.7
4,828,224	+				-0.2
4,828,224	+				+2.3
4,828,224	+				+0.9
4,828,224	+				+0.7
4,828,224	+				-0.5
4,828,224	+				-1.5
4,828,224	+				-1.2
4,828,224	+				+0.6
4,828,224	+				-0.5
4,828,224	+				+2.1
4,828,224	+				+0.9
4,828,224	+				-0.8
4,828,225	-				-2.2
4,828,225	-				-1.2
4,828,225	-				-0.7
4,828,225	-				+0.0
4,828,225	-				-0.8
4,828,225	-				+0.4
4,828,225	-				+0.2
4,828,225	-				+0.1
4,828,225	-				-1.6
4,828,225	-				-1.1
4,828,226	+				-0.1
4,828,226	+				+1.0
4,828,226	+				-0.4
4,828,226	+				+2.7
4,828,227	-				+1.7
4,828,227	-				+0.9
4,828,227	-				+1.7
4,828,227	-				+0.1
4,828,262	+				-1.1
4,828,262	+				-0.3
4,828,262	+				-0.4
4,828,262	+				-0.1
4,828,262	+				-0.2
4,828,262	+				-1.0
4,828,262	+				-1.2
4,828,262	+				-1.2
4,828,262	+				-1.9
4,828,263	-				+0.2
4,828,263	-				+1.5
4,828,263	-				+0.3
4,828,263	-				-0.3
4,828,263	-				-0.5
4,828,263	-				-1.1
4,828,263	-				-0.7
4,828,263	-				-0.2
4,828,314	+				+0.6
4,828,314	+				-0.9
4,828,315	-				+0.1
4,828,387	+		DZA65_RS22325	0.20	+1.3
4,828,387	+		DZA65_RS22325	0.20	-0.3
4,828,387	+		DZA65_RS22325	0.20	+1.9
4,828,387	+		DZA65_RS22325	0.20	+0.2
4,828,388	-		DZA65_RS22325	0.20	+0.5
4,828,388	-		DZA65_RS22325	0.20	-0.0
4,828,472	+		DZA65_RS22325	0.32	-0.9
4,828,472	+		DZA65_RS22325	0.32	-0.8
4,828,473	-		DZA65_RS22325	0.32	+1.3
4,828,484	+		DZA65_RS22325	0.34	-1.3
4,828,484	+		DZA65_RS22325	0.34	-1.7
4,828,484	+		DZA65_RS22325	0.34	-0.3
4,828,546	+		DZA65_RS22325	0.43	-1.0
4,828,547	-		DZA65_RS22325	0.43	+0.5
4,828,547	-		DZA65_RS22325	0.43	+0.7
4,828,547	-		DZA65_RS22325	0.43	+2.1
4,828,547	-		DZA65_RS22325	0.43	+0.1
4,828,547	-		DZA65_RS22325	0.43	-1.5
4,828,612	+		DZA65_RS22325	0.53	-1.9
4,828,612	+		DZA65_RS22325	0.53	-0.5
4,828,612	+		DZA65_RS22325	0.53	-0.2
4,828,612	+		DZA65_RS22325	0.53	-0.4
4,828,613	-		DZA65_RS22325	0.53	-1.0
4,828,613	-		DZA65_RS22325	0.53	-1.2
4,828,613	-		DZA65_RS22325	0.53	-0.6
4,828,622	+		DZA65_RS22325	0.55	+3.0
4,828,622	+		DZA65_RS22325	0.55	-2.0
4,828,623	-		DZA65_RS22325	0.55	+0.5
4,828,623	-		DZA65_RS22325	0.55	-1.6
4,828,623	-		DZA65_RS22325	0.55	-1.0
4,828,623	-		DZA65_RS22325	0.55	-0.7
4,828,623	-		DZA65_RS22325	0.55	-1.1
4,828,756	-		DZA65_RS22325	0.75	-0.5
4,828,789	+		DZA65_RS22325	0.79	+0.9
4,828,789	+		DZA65_RS22325	0.79	+0.7
4,828,789	+		DZA65_RS22325	0.79	-1.2
4,828,789	+		DZA65_RS22325	0.79	-0.3
4,828,789	+		DZA65_RS22325	0.79	+0.4
4,828,790	-		DZA65_RS22325	0.80	-0.3
4,828,790	-		DZA65_RS22325	0.80	-1.6
4,828,790	-		DZA65_RS22325	0.80	-0.0
4,828,790	-		DZA65_RS22325	0.80	+1.1
4,828,790	-		DZA65_RS22325	0.80	-1.0
4,828,790	-		DZA65_RS22325	0.80	+2.7
4,828,790	-		DZA65_RS22325	0.80	-0.1
4,828,808	+		DZA65_RS22325	0.82	+0.2
4,828,808	+		DZA65_RS22325	0.82	-0.3
4,828,823	+		DZA65_RS22325	0.85	+0.1
4,828,823	+		DZA65_RS22325	0.85	+0.6
4,828,824	-		DZA65_RS22325	0.85	-0.7
4,828,833	+		DZA65_RS22325	0.86	-0.5
4,828,875	+				-0.1
4,828,876	-				+0.1
4,828,876	-				-1.0
4,828,876	-				+0.2
4,828,876	-				-0.4
4,828,876	-				+1.0
4,828,924	+				+0.3
4,828,924	+				+0.6
4,828,924	+				-2.8
4,828,924	+				+0.2
4,828,924	+				+0.3
4,828,924	+				+0.3
4,828,925	-				-0.2
4,828,925	-				+0.8
4,828,925	-				+0.2
4,828,925	-				+0.2
4,828,955	-				+0.5
4,828,955	-				-1.8
4,828,992	+				+1.3
4,828,992	+				+0.4
4,828,993	-				-0.0
4,828,993	-				+1.3
4,828,993	-				+0.7
4,828,993	-				-0.8
4,829,017	+				-0.5
4,829,017	+				+1.1
4,829,017	+				-0.3
4,829,017	+				-1.2
4,829,018	-				+0.3
4,829,018	-				+0.3
4,829,018	-				-0.0
4,829,236	+		DZA65_RS22330	0.24	-0.7
4,829,236	+		DZA65_RS22330	0.24	-0.2
4,829,236	+		DZA65_RS22330	0.24	+0.7
4,829,236	+		DZA65_RS22330	0.24	-0.7
4,829,237	-		DZA65_RS22330	0.24	+1.8
4,829,237	-		DZA65_RS22330	0.24	-0.1
4,829,237	-		DZA65_RS22330	0.24	-0.8
4,829,263	+		DZA65_RS22330	0.26	+0.9
4,829,263	+		DZA65_RS22330	0.26	-0.5
4,829,264	-		DZA65_RS22330	0.26	-0.6
4,829,264	-		DZA65_RS22330	0.26	-0.4
4,829,326	+		DZA65_RS22330	0.31	-0.7
4,829,327	-		DZA65_RS22330	0.31	-0.3
4,829,333	+		DZA65_RS22330	0.31	-1.1
4,829,333	+		DZA65_RS22330	0.31	-0.3
4,829,333	+		DZA65_RS22330	0.31	+0.5
4,829,334	-		DZA65_RS22330	0.31	+1.4
4,829,334	-		DZA65_RS22330	0.31	-0.2
4,829,340	+		DZA65_RS22330	0.32	-1.2
4,829,340	+		DZA65_RS22330	0.32	+0.7
4,829,364	-		DZA65_RS22330	0.33	+1.5
4,829,364	-		DZA65_RS22330	0.33	-1.5
4,829,374	+		DZA65_RS22330	0.34	+0.6
4,829,375	-		DZA65_RS22330	0.34	-0.3
4,829,375	-		DZA65_RS22330	0.34	-2.0
4,829,386	+		DZA65_RS22330	0.35	+0.0
4,829,386	+		DZA65_RS22330	0.35	-1.7
4,829,387	-		DZA65_RS22330	0.35	+1.4
4,829,387	-				-0.9
4,829,387	-		DZA65_RS22330	0.35	-1.2
4,829,387	-		DZA65_RS22330	0.35	+1.1
4,829,387	-		DZA65_RS22330	0.35	-0.9
4,829,387	-		DZA65_RS22330	0.35	+0.1
4,829,388	+		DZA65_RS22330	0.35	+1.3
4,829,388	+		DZA65_RS22330	0.35	+1.1
4,829,388	+		DZA65_RS22330	0.35	+1.1
4,829,388	+		DZA65_RS22330	0.35	-0.3
4,829,388	+				+0.5
4,829,388	+		DZA65_RS22330	0.35	-1.7
4,829,388	+		DZA65_RS22330	0.35	+0.8
4,829,388	+		DZA65_RS22330	0.35	-0.1
4,829,388	+		DZA65_RS22330	0.35	-0.4
4,829,389	-		DZA65_RS22330	0.35	+0.1
4,829,389	-		DZA65_RS22330	0.35	-2.4
4,829,389	-		DZA65_RS22330	0.35	+0.2
4,829,389	-		DZA65_RS22330	0.35	+0.5
4,829,389	-		DZA65_RS22330	0.35	+1.1
4,829,389	-		DZA65_RS22330	0.35	-1.6
4,829,421	+		DZA65_RS22330	0.38	+0.4
4,829,462	+		DZA65_RS22330	0.41	-0.8
4,829,462	+		DZA65_RS22330	0.41	-0.6
4,829,462	+		DZA65_RS22330	0.41	-0.3
4,829,462	+		DZA65_RS22330	0.41	-0.1
4,829,462	+		DZA65_RS22330	0.41	+0.8
4,829,462	+		DZA65_RS22330	0.41	+0.9
4,829,463	-		DZA65_RS22330	0.41	-0.5
4,829,463	-		DZA65_RS22330	0.41	+0.8
4,829,463	-		DZA65_RS22330	0.41	-1.7
4,829,463	-		DZA65_RS22330	0.41	+0.1
4,829,509	+		DZA65_RS22330	0.44	+0.5
4,829,509	+		DZA65_RS22330	0.44	-1.7
4,829,510	-		DZA65_RS22330	0.44	+1.5
4,829,538	+		DZA65_RS22330	0.46	+2.3
4,829,538	+		DZA65_RS22330	0.46	-0.0
4,829,538	+		DZA65_RS22330	0.46	+0.1
4,829,539	-		DZA65_RS22330	0.46	-0.3
4,829,655	+		DZA65_RS22330	0.55	-0.2
4,829,655	+		DZA65_RS22330	0.55	-1.5
4,829,655	+		DZA65_RS22330	0.55	-0.9
4,829,656	-		DZA65_RS22330	0.55	-0.6
4,829,656	-		DZA65_RS22330	0.55	+0.6
4,829,656	-		DZA65_RS22330	0.55	+1.1
4,829,656	-		DZA65_RS22330	0.55	+0.1
4,829,656	-		DZA65_RS22330	0.55	+0.1
4,829,656	-		DZA65_RS22330	0.55	-1.2
4,829,656	-		DZA65_RS22330	0.55	-1.8
4,829,716	+		DZA65_RS22330	0.59	+0.1
4,829,716	+		DZA65_RS22330	0.59	-1.2
4,829,724	+		DZA65_RS22330	0.60	-0.1
4,829,793	+		DZA65_RS22330	0.65	-0.2
4,829,845	-		DZA65_RS22330	0.69	+0.3
4,829,845	-		DZA65_RS22330	0.69	-0.5
4,829,992	-		DZA65_RS22330	0.80	-1.7
4,830,011	+		DZA65_RS22330	0.81	-1.1
4,830,011	+		DZA65_RS22330	0.81	-0.6
4,830,012	-		DZA65_RS22330	0.81	-0.5
4,830,012	-		DZA65_RS22330	0.81	-0.7
4,830,181	+				+0.3
4,830,181	+				-1.2
4,830,181	+				+0.4
4,830,181	+				-0.5
4,830,181	+				-2.1
4,830,182	-				-0.1
4,830,182	-				-0.2
4,830,182	-				-1.9
4,830,182	-				+1.1
4,830,182	-				-0.0
4,830,182	-				-0.2
4,830,195	+				+0.8
4,830,195	+				-0.1
4,830,195	+				-0.7
4,830,195	+				-0.4
4,830,195	+				-0.2
4,830,195	+				+1.3
4,830,195	+				+0.1
4,830,195	+				-0.5
4,830,195	+				-1.1
4,830,195	+				+1.8
4,830,195	+				+0.1
4,830,195	+				-0.5
4,830,195	+				+0.5
4,830,195	+				+0.8
4,830,195	+				+0.5
4,830,195	+				-0.5
4,830,196	-				-1.9
4,830,196	-				-0.6
4,830,196	-				-0.2
4,830,196	-				+0.3
4,830,196	-				+0.6
4,830,196	-				+0.1
4,830,196	-				+2.5
4,830,196	-				-0.5
4,830,196	-				-0.9
4,830,196	-				+1.0
4,830,196	-				+1.3
4,830,196	-				+0.8
4,830,342	+				+0.5
4,830,343	-				-0.4
4,830,361	-				-0.2
4,830,383	+				+1.1
4,830,392	-				-1.4
4,830,500	+				+0.7
4,830,500	+				-1.1
4,830,500	+				-0.7
4,830,500	+				-1.2
4,830,500	+				+0.0
4,830,500	+				-1.1
4,830,500	+				+0.4
4,830,500	+				+0.3
4,830,500	+				-0.5
4,830,500	+				-0.1
4,830,500	+				+0.1
4,830,500	+				-0.6
4,830,500	+				+1.7
4,830,500	+				-0.4
4,830,500	+				-0.9
4,830,501	-				-1.2
4,830,501	-				-0.0
4,830,501	-				-0.4
4,830,501	-				-0.3
4,830,501	-				-2.4
4,830,501	-				+0.3
4,830,501	-				+0.4
4,830,501	-				+0.5
4,830,501	-				-0.1
4,830,501	-				+0.8
4,830,501	-				+1.0
4,830,501	-				-1.1
4,830,501	-				+0.3
4,830,501	-				+0.1
4,830,501	-				-0.0
4,830,501	-				+0.3
4,830,501	-				+1.3
4,830,501	-				+0.2
4,830,501	-				-0.5
4,830,501	-				-1.1
4,830,501	-				-0.3
4,830,502	+				-0.8
4,830,502	+				+1.3
4,830,502	+				-0.3
4,830,502	+				-0.2
4,830,502	+				-0.1
4,830,502	+				-0.9
4,830,502	+				+2.4
4,830,502	+				-0.5
4,830,503	-				+0.8
4,830,503	-				-0.4
4,830,503	-				-1.4
4,830,503	-				-0.7
4,830,503	-				-0.4
4,830,503	-				+0.3
4,830,503	-				-0.2
4,830,503	-				-0.5
4,830,503	-				+0.2
4,830,503	-				-1.1
4,830,503	-				-0.5
4,830,632	+		DZA65_RS22335	0.13	-0.2
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4,830,633	-		DZA65_RS22335	0.13	-0.9
4,830,693	+		DZA65_RS22335	0.17	-1.5
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4,830,702	-				-0.9
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4,830,702	-		DZA65_RS22335	0.17	-0.8
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4,830,751	+		DZA65_RS22335	0.20	+0.3
4,830,751	+		DZA65_RS22335	0.20	-0.2
4,830,815	+		DZA65_RS22335	0.23	+0.1
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4,830,815	+		DZA65_RS22335	0.23	-2.1
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4,830,816	-		DZA65_RS22335	0.23	-0.9
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4,831,212	-				-0.9
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4,831,228	-		DZA65_RS22335	0.45	+0.9
4,831,228	-		DZA65_RS22335	0.45	+2.0
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4,831,239	-		DZA65_RS22335	0.46	+0.1
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4,831,239	-		DZA65_RS22335	0.46	+1.9
4,831,239	-		DZA65_RS22335	0.46	-0.0
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4,831,257	+		DZA65_RS22335	0.47	+1.1
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