Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19100

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19095 and DZA65_RS19100 are separated by 94 nucleotidesDZA65_RS19100 and DZA65_RS19105 are separated by 74 nucleotides DZA65_RS19095: DZA65_RS19095 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 4,127,128 to 4,128,045 _RS19095 DZA65_RS19100: DZA65_RS19100 - cell division protein FtsZ, at 4,128,140 to 4,129,291 _RS19100 DZA65_RS19105: DZA65_RS19105 - cell division protein FtsA, at 4,129,366 to 4,130,622 _RS19105 Position (kb) 4128 4129 4130Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 4127.143 kb on - strandat 4128.073 kb on - strandat 4129.319 kb on - strandat 4129.319 kb on - strandat 4129.319 kb on - strandat 4129.319 kb on - strandat 4129.319 kb on - strandat 4129.319 kb on - strandat 4129.344 kb on - strandat 4129.344 kb on - strandat 4129.344 kb on - strandat 4129.344 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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4,127,143 - -1.6
4,128,073 - +0.1
4,129,319 - -1.4
4,129,319 - +1.5
4,129,319 - +0.7
4,129,319 - -0.1
4,129,319 - -0.7
4,129,319 - +0.2
4,129,344 - -1.1
4,129,344 - +6.4
4,129,344 - -0.2
4,129,344 - +0.5

Or see this region's nucleotide sequence