Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15915

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,454,036	-		DZA65_RS15910	0.16	-0.3
3,454,120	-		DZA65_RS15910	0.23	+1.4
3,454,120	-		DZA65_RS15910	0.23	+0.7
3,454,143	+		DZA65_RS15910	0.25	-2.6
3,454,144	-		DZA65_RS15910	0.25	+0.4
3,454,188	+		DZA65_RS15910	0.29	-0.1
3,454,188	+		DZA65_RS15910	0.29	-0.9
3,454,188	+		DZA65_RS15910	0.29	-0.9
3,454,188	+		DZA65_RS15910	0.29	-1.1
3,454,188	+		DZA65_RS15910	0.29	+1.5
3,454,188	+		DZA65_RS15910	0.29	-1.2
3,454,189	-		DZA65_RS15910	0.29	+0.4
3,454,189	-		DZA65_RS15910	0.29	+1.1
3,454,189	-		DZA65_RS15910	0.29	+0.9
3,454,189	-		DZA65_RS15910	0.29	+1.0
3,454,231	-		DZA65_RS15910	0.32	-1.9
3,454,231	-		DZA65_RS15910	0.32	+0.7
3,454,249	-		DZA65_RS15910	0.34	-1.1
3,454,295	+		DZA65_RS15910	0.38	+0.1
3,454,295	+		DZA65_RS15910	0.38	+1.0
3,454,295	+		DZA65_RS15910	0.38	+1.2
3,454,295	+		DZA65_RS15910	0.38	-0.2
3,454,295	+		DZA65_RS15910	0.38	-0.5
3,454,296	-		DZA65_RS15910	0.38	-1.0
3,454,296	-		DZA65_RS15910	0.38	-2.8
3,454,296	-		DZA65_RS15910	0.38	+0.2
3,454,296	-		DZA65_RS15910	0.38	-0.5
3,454,296	-		DZA65_RS15910	0.38	+0.4
3,454,296	-		DZA65_RS15910	0.38	-0.7
3,454,297	+		DZA65_RS15910	0.38	-2.9
3,454,297	+		DZA65_RS15910	0.38	+0.9
3,454,297	+		DZA65_RS15910	0.38	-0.2
3,454,297	+		DZA65_RS15910	0.38	-0.7
3,454,298	-		DZA65_RS15910	0.38	+1.0
3,454,298	-		DZA65_RS15910	0.38	+1.0
3,454,298	-		DZA65_RS15910	0.38	-0.2
3,454,298	-		DZA65_RS15910	0.38	-0.0
3,454,298	-		DZA65_RS15910	0.38	+0.1
3,454,313	-		DZA65_RS15910	0.40	-0.3
3,454,315	+		DZA65_RS15910	0.40	+1.0
3,454,316	-		DZA65_RS15910	0.40	+0.2
3,454,316	-		DZA65_RS15910	0.40	-0.6
3,454,316	-		DZA65_RS15910	0.40	-0.0
3,454,316	-		DZA65_RS15910	0.40	+0.8
3,454,378	+				+0.7
3,454,379	-		DZA65_RS15910	0.45	-0.3
3,454,379	-		DZA65_RS15910	0.45	-1.3
3,454,379	-		DZA65_RS15910	0.45	+0.2
3,454,380	+		DZA65_RS15910	0.45	+1.3
3,454,380	+		DZA65_RS15910	0.45	-0.5
3,454,381	-		DZA65_RS15910	0.45	+0.1
3,454,381	-		DZA65_RS15910	0.45	-0.1
3,454,446	-		DZA65_RS15910	0.51	+0.4
3,454,523	-				+0.7
3,454,558	+		DZA65_RS15910	0.61	-2.1
3,454,615	+		DZA65_RS15910	0.65	-2.3
3,454,615	+		DZA65_RS15910	0.65	-1.6
3,454,616	-		DZA65_RS15910	0.66	+1.5
3,454,681	+		DZA65_RS15910	0.71	+0.5
3,454,708	+		DZA65_RS15910	0.73	+0.1
3,454,709	-		DZA65_RS15910	0.74	+0.3
3,454,709	-		DZA65_RS15910	0.74	+1.0
3,454,709	-		DZA65_RS15910	0.74	-0.3
3,454,709	-		DZA65_RS15910	0.74	-1.3
3,454,735	+		DZA65_RS15910	0.76	-0.1
3,454,735	+		DZA65_RS15910	0.76	+0.7
3,454,750	+		DZA65_RS15910	0.77	-0.9
3,454,750	+		DZA65_RS15910	0.77	+0.7
3,454,750	+		DZA65_RS15910	0.77	-0.6
3,454,751	-		DZA65_RS15910	0.77	-1.3
3,454,751	-		DZA65_RS15910	0.77	-0.3
3,454,751	-		DZA65_RS15910	0.77	+0.3
3,454,751	-		DZA65_RS15910	0.77	-0.9
3,454,751	-		DZA65_RS15910	0.77	-0.9
3,454,769	+		DZA65_RS15910	0.79	-0.1
3,454,769	+		DZA65_RS15910	0.79	-0.2
3,454,769	+		DZA65_RS15910	0.79	-0.1
3,454,770	-		DZA65_RS15910	0.79	+0.1
3,454,770	-		DZA65_RS15910	0.79	-0.3
3,454,770	-		DZA65_RS15910	0.79	-0.2
3,454,770	-		DZA65_RS15910	0.79	-1.3
3,454,770	-		DZA65_RS15910	0.79	-2.6
3,454,770	-		DZA65_RS15910	0.79	-0.4
3,454,770	-		DZA65_RS15910	0.79	-1.1
3,454,873	+		DZA65_RS15910	0.88	-0.1
3,454,935	+				-1.0
3,454,935	+				+0.3
3,454,935	+				-0.7
3,454,935	+				+0.7
3,454,936	-				+0.4
3,454,936	-				-0.4
3,454,936	-				-0.4
3,454,986	+				-0.5
3,454,986	+				-1.4
3,454,986	+				+0.5
3,454,986	+				+1.1
3,454,986	+				-0.5
3,454,987	-				-1.3
3,454,987	-				-0.3
3,455,014	+				+1.0
3,455,014	+				+0.1
3,455,015	-				-0.1
3,455,046	+				-0.5
3,455,046	+				-0.6
3,455,046	+				-1.6
3,455,046	+				-0.2
3,455,047	-				-0.7
3,455,047	-				-0.9
3,455,047	-				+0.7
3,455,066	+		DZA65_RS15915	0.16	+0.3
3,455,066	+		DZA65_RS15915	0.16	+0.1
3,455,066	+		DZA65_RS15915	0.16	-1.1
3,455,066	+		DZA65_RS15915	0.16	+0.7
3,455,066	+		DZA65_RS15915	0.16	-2.0
3,455,066	+		DZA65_RS15915	0.16	+0.4
3,455,066	+		DZA65_RS15915	0.16	-1.3
3,455,067	-		DZA65_RS15915	0.16	+0.0
3,455,067	-		DZA65_RS15915	0.16	+0.0
3,455,067	-		DZA65_RS15915	0.16	-0.1
3,455,067	-		DZA65_RS15915	0.16	+0.2
3,455,067	-		DZA65_RS15915	0.16	+0.4
3,455,067	-		DZA65_RS15915	0.16	-1.0
3,455,067	-		DZA65_RS15915	0.16	-0.5
3,455,070	+		DZA65_RS15915	0.17	+0.6
3,455,070	+		DZA65_RS15915	0.17	+0.4
3,455,071	-		DZA65_RS15915	0.18	-0.1
3,455,174	-		DZA65_RS15915	0.52	+0.3
3,455,174	-		DZA65_RS15915	0.52	-0.0
3,455,186	-		DZA65_RS15915	0.56	+1.9
3,455,186	-		DZA65_RS15915	0.56	-1.5
3,455,221	+		DZA65_RS15915	0.67	-0.1
3,455,221	+		DZA65_RS15915	0.67	+1.1
3,455,221	+		DZA65_RS15915	0.67	+0.6
3,455,221	+		DZA65_RS15915	0.67	+0.9
3,455,221	+		DZA65_RS15915	0.67	-0.1
3,455,221	+		DZA65_RS15915	0.67	-0.5
3,455,221	+		DZA65_RS15915	0.67	+0.9
3,455,221	+		DZA65_RS15915	0.67	+1.0
3,455,222	-		DZA65_RS15915	0.67	-1.1
3,455,239	+		DZA65_RS15915	0.73	-1.0
3,455,239	+		DZA65_RS15915	0.73	-1.3
3,455,240	-				+0.1
3,455,244	+		DZA65_RS15915	0.75	+1.7
3,455,244	+		DZA65_RS15915	0.75	+1.3
3,455,244	+		DZA65_RS15915	0.75	+1.6
3,455,252	+		DZA65_RS15915	0.77	-1.6
3,455,252	+		DZA65_RS15915	0.77	-0.8
3,455,252	+		DZA65_RS15915	0.77	-2.1
3,455,252	+		DZA65_RS15915	0.77	+0.3
3,455,253	-		DZA65_RS15915	0.78	-0.3
3,455,253	-		DZA65_RS15915	0.78	-3.3
3,455,253	-		DZA65_RS15915	0.78	-0.6
3,455,253	-		DZA65_RS15915	0.78	-1.3
3,455,254	+		DZA65_RS15915	0.78	-0.3
3,455,254	+		DZA65_RS15915	0.78	-0.2
3,455,254	+		DZA65_RS15915	0.78	-0.3
3,455,254	+		DZA65_RS15915	0.78	+1.3
3,455,254	+		DZA65_RS15915	0.78	-1.0
3,455,254	+		DZA65_RS15915	0.78	+0.3
3,455,254	+		DZA65_RS15915	0.78	+0.2
3,455,255	-		DZA65_RS15915	0.78	+0.4
3,455,255	-		DZA65_RS15915	0.78	+1.5
3,455,255	-		DZA65_RS15915	0.78	+1.0
3,455,255	-		DZA65_RS15915	0.78	+0.3
3,455,255	-		DZA65_RS15915	0.78	+0.2
3,455,261	-		DZA65_RS15915	0.80	-1.3
3,455,335	+				-0.4
3,455,335	+				-1.1
3,455,335	+				-0.0
3,455,336	-				+1.4
3,455,336	-				-1.7
3,455,359	+				-1.1
3,455,360	-				-0.7
3,455,360	-				-1.2
3,455,375	-				-1.6
3,455,454	+				-0.3
3,455,454	+				-1.9
3,455,454	+				-0.3
3,455,454	+				+1.3
3,455,455	-				+0.3
3,455,455	-				+0.3
3,455,455	-				+0.3
3,455,503	+				-0.3
3,455,504	-				+1.0
3,455,504	-				-1.9
3,455,528	+				+1.4
3,455,553	+				-1.6
3,455,553	+				+0.6
3,455,553	+				-0.6
3,455,554	-				-0.6
3,455,554	-				-1.8
3,455,554	-				-0.0
3,455,554	-				+0.0
3,455,554	-				-0.3
3,455,620	-				-1.6
3,455,623	+				-0.3
3,455,641	+				-1.6
3,455,642	-				-1.6
3,455,642	-				-0.9
3,455,642	-				-0.3
3,455,645	+				+0.8
3,455,645	+				-1.1
3,455,645	+				+0.7
3,455,645	+				+1.3
3,455,645	+				-2.1
3,455,646	-				+0.7
3,455,646	-				-0.2
3,455,646	-				+0.4
3,455,646	-				-0.3
3,455,646	-				-0.5
3,455,649	+		DZA65_RS15920	0.10	+1.1
3,455,649	+		DZA65_RS15920	0.10	-2.5
3,455,650	-		DZA65_RS15920	0.10	+0.6
3,455,650	-		DZA65_RS15920	0.10	+0.6
3,455,650	-		DZA65_RS15920	0.10	+1.2
3,455,650	-		DZA65_RS15920	0.10	-0.8
3,455,737	+		DZA65_RS15920	0.22	+0.9
3,455,737	+				+0.7
3,455,737	+		DZA65_RS15920	0.22	+1.0
3,455,737	+		DZA65_RS15920	0.22	-0.3
3,455,737	+		DZA65_RS15920	0.22	+1.0
3,455,738	-		DZA65_RS15920	0.22	+0.1
3,455,766	-		DZA65_RS15920	0.26	+0.4
3,455,818	+		DZA65_RS15920	0.32	-1.6
3,455,818	+				+0.1
3,455,818	+		DZA65_RS15920	0.32	-0.3
3,455,818	+		DZA65_RS15920	0.32	-2.1
3,455,818	+		DZA65_RS15920	0.32	-2.1
3,455,818	+		DZA65_RS15920	0.32	-0.9
3,455,819	-		DZA65_RS15920	0.33	-0.5
3,455,819	-		DZA65_RS15920	0.33	+0.5
3,455,819	-		DZA65_RS15920	0.33	-0.5
3,455,819	-		DZA65_RS15920	0.33	-0.6
3,455,819	-		DZA65_RS15920	0.33	-2.3
3,455,821	+		DZA65_RS15920	0.33	+0.1
3,455,821	+		DZA65_RS15920	0.33	-0.3
3,455,821	+		DZA65_RS15920	0.33	-0.8
3,455,821	+		DZA65_RS15920	0.33	-0.3
3,455,822	-		DZA65_RS15920	0.33	-0.9
3,455,822	-		DZA65_RS15920	0.33	-0.3
3,455,822	-		DZA65_RS15920	0.33	+1.0
3,455,835	-		DZA65_RS15920	0.35	+0.8
3,455,835	-		DZA65_RS15920	0.35	-0.4
3,455,855	+		DZA65_RS15920	0.37	-0.2
3,455,855	+		DZA65_RS15920	0.37	-0.0
3,455,855	+		DZA65_RS15920	0.37	-0.0
3,455,855	+		DZA65_RS15920	0.37	+0.4
3,455,856	-		DZA65_RS15920	0.37	-0.4
3,455,856	-		DZA65_RS15920	0.37	-0.3
3,455,856	-		DZA65_RS15920	0.37	+1.3
3,455,856	-		DZA65_RS15920	0.37	+0.1
3,455,856	-		DZA65_RS15920	0.37	-0.3
3,455,856	-		DZA65_RS15920	0.37	+1.1
3,455,856	-		DZA65_RS15920	0.37	+1.7
3,455,856	-		DZA65_RS15920	0.37	+1.1
3,455,856	-		DZA65_RS15920	0.37	+1.0
3,455,856	-		DZA65_RS15920	0.37	+0.2
3,455,856	-		DZA65_RS15920	0.37	-2.3
3,455,877	+		DZA65_RS15920	0.40	+1.3
3,455,877	+		DZA65_RS15920	0.40	+0.4
3,455,877	+		DZA65_RS15920	0.40	+4.0
3,455,877	+		DZA65_RS15920	0.40	-0.6
3,455,877	+		DZA65_RS15920	0.40	+1.4
3,455,877	+		DZA65_RS15920	0.40	+0.2
3,455,877	+		DZA65_RS15920	0.40	-1.6
3,455,877	+				+0.1
3,455,877	+		DZA65_RS15920	0.40	-0.9
3,455,877	+		DZA65_RS15920	0.40	-0.1
3,455,878	-		DZA65_RS15920	0.40	-0.5
3,455,878	-		DZA65_RS15920	0.40	+0.3
3,455,878	-		DZA65_RS15920	0.40	-1.6
3,455,878	-		DZA65_RS15920	0.40	-0.6
3,455,878	-		DZA65_RS15920	0.40	-0.3
3,455,878	-		DZA65_RS15920	0.40	-0.9
3,455,878	-		DZA65_RS15920	0.40	-2.6
3,455,878	-		DZA65_RS15920	0.40	+0.5
3,455,889	-		DZA65_RS15920	0.42	-0.6
3,455,964	-		DZA65_RS15920	0.52	-0.3
3,455,973	+		DZA65_RS15920	0.53	+0.4
3,455,973	+		DZA65_RS15920	0.53	+1.0
3,455,973	+		DZA65_RS15920	0.53	-0.2
3,455,973	+		DZA65_RS15920	0.53	+0.2
3,455,973	+		DZA65_RS15920	0.53	-1.1
3,455,973	+		DZA65_RS15920	0.53	-3.2
3,455,973	+		DZA65_RS15920	0.53	+0.9
3,455,973	+		DZA65_RS15920	0.53	+0.8
3,455,973	+		DZA65_RS15920	0.53	-0.6
3,455,973	+		DZA65_RS15920	0.53	-1.8
3,455,973	+		DZA65_RS15920	0.53	-2.3
3,455,973	+		DZA65_RS15920	0.53	+0.3
3,455,973	+		DZA65_RS15920	0.53	+0.0
3,455,974	-		DZA65_RS15920	0.53	-0.9
3,455,974	-		DZA65_RS15920	0.53	-0.6
3,455,974	-		DZA65_RS15920	0.53	+0.4
3,455,974	-		DZA65_RS15920	0.53	-1.3
3,455,974	-		DZA65_RS15920	0.53	-0.3
3,455,974	-		DZA65_RS15920	0.53	+1.6
3,455,974	-		DZA65_RS15920	0.53	-0.0
3,455,974	-		DZA65_RS15920	0.53	+1.2
3,455,974	-		DZA65_RS15920	0.53	-0.7
3,455,974	-		DZA65_RS15920	0.53	+1.3
3,455,974	-		DZA65_RS15920	0.53	+0.8
3,455,980	+		DZA65_RS15920	0.54	+0.6
3,456,047	+		DZA65_RS15920	0.63	+0.1
3,456,176	-		DZA65_RS15920	0.80	+0.4
3,456,184	-		DZA65_RS15920	0.81	+0.7
3,456,193	+		DZA65_RS15920	0.82	-1.3
3,456,199	+		DZA65_RS15920	0.83	-0.2
3,456,199	+		DZA65_RS15920	0.83	-0.0
3,456,232	+		DZA65_RS15920	0.87	-0.6
3,456,232	+		DZA65_RS15920	0.87	+0.7
3,456,232	+		DZA65_RS15920	0.87	-1.9
3,456,232	+		DZA65_RS15920	0.87	+0.0
3,456,238	+		DZA65_RS15920	0.88	+1.0
3,456,239	-		DZA65_RS15920	0.88	+2.0
3,456,239	-		DZA65_RS15920	0.88	-0.2
3,456,260	+				+0.7
3,456,260	+				-1.6
3,456,260	+				-1.3
3,456,260	+				+1.3
3,456,261	-				+1.4
3,456,261	-				+0.5
3,456,261	-				+0.9
3,456,278	+				+1.0
3,456,278	+				+1.0
3,456,278	+				+2.3
3,456,279	-				+1.0
3,456,310	+				-0.3
3,456,311	-				+0.3
3,456,311	-				+2.5