Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14840

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,234,191	-				+0.5
3,234,195	+				-1.8
3,234,195	+				-2.0
3,234,195	+				+0.3
3,234,195	+				+0.2
3,234,196	-				-0.5
3,234,196	-				+1.3
3,234,196	-				+1.1
3,234,197	+				-1.4
3,234,197	+				-1.4
3,234,198	-				-0.6
3,234,277	+				+0.2
3,234,278	-				-0.8
3,234,278	-				+0.2
3,234,341	+				-0.7
3,234,341	+				+1.3
3,234,342	-				-0.8
3,234,342	-				-0.0
3,234,342	-				+1.6
3,234,342	-				-2.0
3,234,342	-				+1.3
3,234,342	-				+0.4
3,234,342	-				+0.6
3,234,342	-				-0.8
3,234,342	-				+0.6
3,234,352	+				-0.8
3,234,353	-				-2.4
3,234,410	-				-0.7
3,234,420	+				+0.2
3,234,420	+				+0.2
3,234,420	+				-2.0
3,234,420	+				+1.3
3,234,420	+				-1.4
3,234,420	+				-1.2
3,234,420	+				-0.0
3,234,420	+				+2.0
3,234,420	+				+0.6
3,234,420	+				-0.4
3,234,420	+				+0.2
3,234,420	+				+0.6
3,234,421	-				+1.0
3,234,421	-				-0.3
3,234,421	-				+0.4
3,234,421	-				-0.0
3,234,421	-				-0.6
3,234,421	-				+0.3
3,234,421	-				+0.9
3,234,421	-				+0.1
3,234,421	-				-0.1
3,234,421	-				+0.1
3,234,421	-				+0.6
3,234,421	-				-1.0
3,234,427	+				-1.2
3,234,428	-				-2.0
3,234,428	-				-0.8
3,234,428	-				-0.2
3,234,428	-				+0.6
3,234,428	-				-0.8
3,234,431	+				+0.6
3,234,431	+				-0.2
3,234,431	+				+0.3
3,234,431	+				+0.1
3,234,431	+				-1.4
3,234,432	-				-0.3
3,234,435	+				-0.6
3,234,435	+				+1.1
3,234,436	-				+1.1
3,234,436	-				+0.2
3,234,436	-				-0.2
3,234,446	+				-1.2
3,234,447	-				-0.2
3,234,452	+				-0.4
3,234,497	+				+0.0
3,234,497	+				+1.0
3,234,497	+				+2.6
3,234,497	+				-0.1
3,234,497	+				+0.3
3,234,497	+				+0.6
3,234,497	+				-1.8
3,234,497	+				+1.2
3,234,497	+				+0.4
3,234,498	-				-1.0
3,234,498	-				-0.6
3,234,504	+				-0.4
3,234,504	+				+2.0
3,234,505	-				-0.0
3,234,505	-				-1.2
3,234,505	-				-2.2
3,234,519	-				-2.0
3,234,532	+				-0.8
3,234,532	+				-0.4
3,234,533	-				-1.0
3,234,533	-				+2.1
3,234,569	+				-0.7
3,234,571	+				+1.3
3,234,571	+				-0.0
3,234,572	-				-0.4
3,234,593	+				+1.3
3,234,594	-				-0.4
3,234,604	+				-2.0
3,234,636	-				-0.4
3,234,664	-				-0.3
3,234,773	+				+1.9
3,234,842	+				-0.4
3,234,848	-				-0.0
3,234,859	+				+0.7
3,234,887	+				-2.2
3,234,939	-				-1.2
3,234,939	-				+0.2
3,234,975	-		DZA65_RS14835	0.34	-1.3
3,235,031	+		DZA65_RS14835	0.83	-0.2
3,235,031	+		DZA65_RS14835	0.83	-0.1
3,235,063	+				+0.1
3,235,063	+				+0.4
3,235,071	+				+1.6
3,235,071	+				-0.3
3,235,071	+				+0.3
3,235,071	+				-0.9
3,235,072	-				-0.2
3,235,072	-				-0.2
3,235,072	-				+1.1
3,235,072	-				+0.1
3,235,324	+		DZA65_RS14840	0.21	-2.2
3,235,324	+		DZA65_RS14840	0.21	-1.0
3,235,324	+		DZA65_RS14840	0.21	+1.1
3,235,324	+		DZA65_RS14840	0.21	+0.6
3,235,325	-		DZA65_RS14840	0.21	+1.1
3,235,325	-		DZA65_RS14840	0.21	+0.7
3,235,333	+		DZA65_RS14840	0.22	-1.2
3,235,333	+		DZA65_RS14840	0.22	-1.4
3,235,333	+		DZA65_RS14840	0.22	-1.2
3,235,334	-		DZA65_RS14840	0.22	-0.8
3,235,335	+		DZA65_RS14840	0.22	-0.4
3,235,342	+		DZA65_RS14840	0.23	+0.2
3,235,425	+		DZA65_RS14840	0.35	+0.1
3,235,737	-		DZA65_RS14840	0.78	-2.0
3,235,924	-				-0.0
3,235,945	+				-0.2
3,235,946	-				-2.4
3,235,946	-				+0.2
3,235,990	+				+0.6
3,235,991	-				-0.2
3,235,996	+				+0.5
3,235,996	+				-0.9
3,236,082	+		DZA65_RS14845	0.12	+1.1
3,236,083	-		DZA65_RS14845	0.12	-0.3
3,236,088	+		DZA65_RS14845	0.13	-0.6
3,236,088	+		DZA65_RS14845	0.13	+0.6
3,236,089	-		DZA65_RS14845	0.13	+1.6
3,236,089	-		DZA65_RS14845	0.13	+1.1
3,236,089	-		DZA65_RS14845	0.13	+0.1
3,236,102	+		DZA65_RS14845	0.16	-1.5
3,236,102	+		DZA65_RS14845	0.16	+0.4
3,236,102	+		DZA65_RS14845	0.16	+0.3
3,236,102	+		DZA65_RS14845	0.16	+0.1
3,236,196	+		DZA65_RS14845	0.35	+0.1
3,236,196	+		DZA65_RS14845	0.35	-1.9
3,236,211	+		DZA65_RS14845	0.38	-1.9
3,236,211	+		DZA65_RS14845	0.38	-0.9
3,236,212	-		DZA65_RS14845	0.39	+1.0
3,236,212	-		DZA65_RS14845	0.39	-0.1
3,236,212	-		DZA65_RS14845	0.39	+1.0
3,236,212	-		DZA65_RS14845	0.39	-0.4
3,236,212	-		DZA65_RS14845	0.39	-2.2
3,236,308	+		DZA65_RS14845	0.58	-1.2
3,236,309	-		DZA65_RS14845	0.59	+0.6
3,236,309	-		DZA65_RS14845	0.59	-0.0
3,236,322	+		DZA65_RS14845	0.61	-0.7
3,236,322	+		DZA65_RS14845	0.61	+1.0
3,236,322	+		DZA65_RS14845	0.61	-0.2
3,236,322	+		DZA65_RS14845	0.61	-0.2
3,236,322	+		DZA65_RS14845	0.61	+1.2
3,236,323	-		DZA65_RS14845	0.62	-1.0
3,236,323	-		DZA65_RS14845	0.62	-2.2
3,236,323	-		DZA65_RS14845	0.62	+0.2
3,236,323	-		DZA65_RS14845	0.62	-0.5
3,236,323	-		DZA65_RS14845	0.62	+0.2
3,236,323	-		DZA65_RS14845	0.62	-1.2
3,236,323	-		DZA65_RS14845	0.62	-0.6
3,236,323	-		DZA65_RS14845	0.62	-0.2
3,236,337	+		DZA65_RS14845	0.64	+0.2
3,236,337	+		DZA65_RS14845	0.64	+1.7
3,236,338	-		DZA65_RS14845	0.65	-0.2
3,236,373	+		DZA65_RS14845	0.72	-0.4
3,236,374	-		DZA65_RS14845	0.72	-1.4
3,236,374	-		DZA65_RS14845	0.72	-0.3
3,236,400	+		DZA65_RS14845	0.77	-0.4
3,236,400	+				+1.7
3,236,400	+		DZA65_RS14845	0.77	-0.1
3,236,400	+		DZA65_RS14845	0.77	+0.7
3,236,400	+		DZA65_RS14845	0.77	-2.4
3,236,400	+		DZA65_RS14845	0.77	+0.7
3,236,400	+		DZA65_RS14845	0.77	-0.8
3,236,400	+		DZA65_RS14845	0.77	-2.6
3,236,401	-		DZA65_RS14845	0.78	+2.7
3,236,401	-		DZA65_RS14845	0.78	-1.4
3,236,401	-		DZA65_RS14845	0.78	-0.8
3,236,491	+				+1.4
3,236,491	+				-0.7
3,236,491	+				+0.2
3,236,492	-				-0.5
3,236,492	-				-0.1
3,236,510	-				-1.0
3,236,686	-				-0.7
3,236,707	+				-1.6
3,236,707	+				+1.5
3,236,707	+				+1.0
3,236,708	-				+0.7
3,236,708	-				-0.5
3,236,730	+				-1.2
3,236,861	+		DZA65_RS14850	0.12	-0.2