Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14185

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,039,798	+		DZA65_RS14180	0.56	-2.3
3,039,798	+		DZA65_RS14180	0.56	+2.0
3,039,799	-		DZA65_RS14180	0.56	+0.7
3,039,799	-		DZA65_RS14180	0.56	-1.2
3,039,947	+		DZA65_RS14180	0.64	-0.7
3,039,966	+		DZA65_RS14180	0.65	+0.9
3,039,967	-		DZA65_RS14180	0.65	+1.0
3,039,967	-		DZA65_RS14180	0.65	+1.8
3,040,132	+		DZA65_RS14180	0.74	-0.7
3,040,132	+		DZA65_RS14180	0.74	-0.4
3,040,132	+		DZA65_RS14180	0.74	-0.2
3,040,133	-		DZA65_RS14180	0.74	+0.6
3,040,133	-		DZA65_RS14180	0.74	-2.0
3,040,142	+		DZA65_RS14180	0.74	+0.1
3,040,143	-		DZA65_RS14180	0.74	+0.6
3,040,143	-		DZA65_RS14180	0.74	-0.7
3,040,155	+		DZA65_RS14180	0.75	+1.9
3,040,155	+		DZA65_RS14180	0.75	-1.0
3,040,156	-		DZA65_RS14180	0.75	-0.2
3,040,156	-		DZA65_RS14180	0.75	-1.4
3,040,156	-		DZA65_RS14180	0.75	+0.5
3,040,179	+		DZA65_RS14180	0.76	+3.5
3,040,179	+		DZA65_RS14180	0.76	+0.2
3,040,186	+		DZA65_RS14180	0.77	+1.2
3,040,186	+		DZA65_RS14180	0.77	-2.1
3,040,187	-		DZA65_RS14180	0.77	+0.7
3,040,187	-		DZA65_RS14180	0.77	-0.3
3,040,187	-		DZA65_RS14180	0.77	-0.4
3,040,187	-		DZA65_RS14180	0.77	+0.3
3,040,187	-				+0.8
3,040,188	+		DZA65_RS14180	0.77	-0.5
3,040,188	+		DZA65_RS14180	0.77	+0.4
3,040,188	+		DZA65_RS14180	0.77	+1.8
3,040,189	-		DZA65_RS14180	0.77	-0.3
3,040,189	-		DZA65_RS14180	0.77	-0.0
3,040,221	+		DZA65_RS14180	0.78	-1.1
3,040,221	+		DZA65_RS14180	0.78	-1.1
3,040,222	-		DZA65_RS14180	0.78	-2.0
3,040,222	-		DZA65_RS14180	0.78	-0.1
3,040,242	+		DZA65_RS14180	0.79	-0.1
3,040,243	-		DZA65_RS14180	0.80	-0.8
3,040,243	-		DZA65_RS14180	0.80	+1.7
3,040,243	-		DZA65_RS14180	0.80	+0.7
3,040,243	-		DZA65_RS14180	0.80	-2.1
3,040,324	-		DZA65_RS14180	0.84	-1.8
3,040,326	+		DZA65_RS14180	0.84	-0.7
3,040,327	-		DZA65_RS14180	0.84	+1.2
3,040,327	-		DZA65_RS14180	0.84	+0.7
3,040,327	-		DZA65_RS14180	0.84	+0.8
3,040,361	+		DZA65_RS14180	0.86	+0.4
3,040,362	-		DZA65_RS14180	0.86	+1.0
3,040,362	-		DZA65_RS14180	0.86	+0.2
3,040,424	-		DZA65_RS14180	0.89	+0.8
3,040,427	+		DZA65_RS14180	0.89	+0.4
3,040,427	+		DZA65_RS14180	0.89	-0.2
3,040,427	+		DZA65_RS14180	0.89	+0.5
3,040,427	+		DZA65_RS14180	0.89	+0.2
3,040,427	+		DZA65_RS14180	0.89	-1.5
3,040,428	-		DZA65_RS14180	0.89	-0.5
3,040,428	-		DZA65_RS14180	0.89	+0.0
3,040,428	-		DZA65_RS14180	0.89	+0.3
3,040,428	-		DZA65_RS14180	0.89	-2.1
3,040,446	+				-2.5
3,040,448	+				+0.8
3,040,448	+				+0.8
3,040,448	+				-0.2
3,040,448	+				+1.9
3,040,448	+				+0.1
3,040,448	+				+1.1
3,040,448	+				+0.2
3,040,449	-				-0.5
3,040,449	-				-0.3
3,040,449	-				-0.4
3,040,449	-				-0.4
3,040,449	-				-0.1
3,040,449	-				+1.5
3,040,449	-				+0.8
3,040,449	-				-0.5
3,040,449	-				-0.1
3,040,449	-				-0.0
3,040,449	-				+0.6
3,040,464	+				-0.7
3,040,465	-				+0.8
3,040,465	-				-0.3
3,040,465	-				+0.9
3,040,465	-				-0.4
3,040,466	+				-0.8
3,040,466	+				+1.4
3,040,466	+				-1.2
3,040,467	-				+0.1
3,040,467	-				+0.0
3,040,467	-				-0.1
3,040,467	-				+0.7
3,040,467	-				-0.6
3,040,573	+				-0.7
3,040,573	+				+2.6
3,040,573	+				+1.5
3,040,573	+				+1.1
3,040,574	-				-1.2
3,040,574	-				+1.0
3,040,574	-				+0.5
3,040,590	+				+0.1
3,040,590	+				-0.5
3,040,591	-				-0.5
3,040,596	-				+0.2
3,040,620	+				-1.1
3,040,620	+				-1.0
3,040,621	-				-0.7
3,040,621	-				+0.2
3,040,622	+				-0.2
3,040,622	+				-0.4
3,040,622	+				-1.1
3,040,623	-				-0.6
3,040,623	-				-0.5
3,040,623	-				-0.1
3,040,623	-				-0.7
3,040,635	+				+0.1
3,040,636	-				-1.1
3,040,636	-				-1.1
3,040,653	+				-0.8
3,040,653	+				+0.7
3,040,653	+				+0.5
3,040,654	-				+0.5
3,040,654	-				+0.1
3,040,654	-				-1.2
3,040,654	-				-0.1
3,040,657	+				+1.1
3,040,657	+				-0.2
3,040,657	+				-0.5
3,040,657	+				+0.5
3,040,657	+				+3.1
3,040,657	+				+0.9
3,040,657	+				-0.3
3,040,658	-				-1.7
3,040,658	-				+0.5
3,040,658	-				-0.2
3,040,658	-				-2.5
3,040,658	-				+0.6
3,040,658	-				+0.2
3,040,658	-				+1.0
3,040,777	+				-0.8
3,040,785	+				+0.3
3,040,891	+				+1.3
3,040,891	+				-0.6
3,040,892	-				-0.8
3,040,916	+				-0.6
3,040,997	+		DZA65_RS14185	0.15	-0.0
3,040,997	+		DZA65_RS14185	0.15	-0.5
3,040,997	+		DZA65_RS14185	0.15	+0.8
3,040,997	+		DZA65_RS14185	0.15	+0.8
3,040,998	-		DZA65_RS14185	0.15	+0.5
3,040,998	-		DZA65_RS14185	0.15	+0.2
3,040,998	-		DZA65_RS14185	0.15	+0.3
3,041,008	+		DZA65_RS14185	0.16	-0.5
3,041,008	+		DZA65_RS14185	0.16	+1.1
3,041,009	-		DZA65_RS14185	0.16	-0.4
3,041,009	-				-0.5
3,041,009	-		DZA65_RS14185	0.16	-0.7
3,041,052	+		DZA65_RS14185	0.19	-0.5
3,041,053	-		DZA65_RS14185	0.19	-1.1
3,041,086	+		DZA65_RS14185	0.21	+0.3
3,041,086	+		DZA65_RS14185	0.21	+0.1
3,041,086	+		DZA65_RS14185	0.21	-0.7
3,041,130	-		DZA65_RS14185	0.24	-0.7
3,041,134	+		DZA65_RS14185	0.25	+0.8
3,041,134	+		DZA65_RS14185	0.25	-0.1
3,041,134	+		DZA65_RS14185	0.25	-1.1
3,041,134	+		DZA65_RS14185	0.25	+0.3
3,041,134	+		DZA65_RS14185	0.25	-1.1
3,041,134	+		DZA65_RS14185	0.25	+0.0
3,041,135	-		DZA65_RS14185	0.25	+1.7
3,041,135	-		DZA65_RS14185	0.25	-0.2
3,041,135	-		DZA65_RS14185	0.25	+0.8
3,041,135	-		DZA65_RS14185	0.25	-0.6
3,041,157	-		DZA65_RS14185	0.26	+0.2
3,041,157	-		DZA65_RS14185	0.26	-0.5
3,041,188	+		DZA65_RS14185	0.28	-0.1
3,041,189	-		DZA65_RS14185	0.29	+1.4
3,041,189	-		DZA65_RS14185	0.29	-1.7
3,041,189	-		DZA65_RS14185	0.29	+1.7
3,041,198	-		DZA65_RS14185	0.29	-0.5
3,041,198	-		DZA65_RS14185	0.29	-0.1
3,041,206	+		DZA65_RS14185	0.30	+2.7
3,041,213	+		DZA65_RS14185	0.30	-1.5
3,041,214	-		DZA65_RS14185	0.30	-0.3
3,041,279	+		DZA65_RS14185	0.35	-2.7
3,041,279	+		DZA65_RS14185	0.35	+0.0
3,041,280	-		DZA65_RS14185	0.35	-1.5
3,041,280	-		DZA65_RS14185	0.35	+1.5
3,041,280	-		DZA65_RS14185	0.35	-1.3
3,041,296	+		DZA65_RS14185	0.36	+0.8
3,041,296	+		DZA65_RS14185	0.36	-0.7
3,041,312	+		DZA65_RS14185	0.37	-0.1
3,041,312	+		DZA65_RS14185	0.37	-0.5
3,041,329	-		DZA65_RS14185	0.38	+0.5
3,041,393	+		DZA65_RS14185	0.43	+2.7
3,041,411	+		DZA65_RS14185	0.44	+0.8
3,041,411	+		DZA65_RS14185	0.44	-0.2
3,041,411	+		DZA65_RS14185	0.44	-0.1
3,041,412	-				-0.5
3,041,536	+		DZA65_RS14185	0.53	-0.2
3,041,536	+		DZA65_RS14185	0.53	-1.6
3,041,536	+		DZA65_RS14185	0.53	-0.1
3,041,536	+		DZA65_RS14185	0.53	-1.1
3,041,536	+		DZA65_RS14185	0.53	-0.1
3,041,536	+		DZA65_RS14185	0.53	+0.4
3,041,536	+		DZA65_RS14185	0.53	-0.4
3,041,536	+		DZA65_RS14185	0.53	+0.2
3,041,536	+		DZA65_RS14185	0.53	-0.1
3,041,536	+		DZA65_RS14185	0.53	-0.6
3,041,537	-		DZA65_RS14185	0.53	+1.1
3,041,537	-		DZA65_RS14185	0.53	-0.2
3,041,537	-		DZA65_RS14185	0.53	-0.0
3,041,537	-		DZA65_RS14185	0.53	-0.1
3,041,537	-		DZA65_RS14185	0.53	-0.4
3,041,537	-		DZA65_RS14185	0.53	+0.2
3,041,537	-		DZA65_RS14185	0.53	+0.8
3,041,537	-		DZA65_RS14185	0.53	-0.5
3,041,543	+		DZA65_RS14185	0.53	-0.1
3,041,583	+		DZA65_RS14185	0.56	-0.5
3,041,583	+		DZA65_RS14185	0.56	-0.6
3,041,583	+		DZA65_RS14185	0.56	+1.0
3,041,583	+		DZA65_RS14185	0.56	-2.3
3,041,583	+		DZA65_RS14185	0.56	+0.4
3,041,583	+		DZA65_RS14185	0.56	-0.3
3,041,583	+		DZA65_RS14185	0.56	-0.7
3,041,583	+		DZA65_RS14185	0.56	-0.8
3,041,583	+		DZA65_RS14185	0.56	-0.5
3,041,583	+		DZA65_RS14185	0.56	+0.5
3,041,583	+		DZA65_RS14185	0.56	-0.2
3,041,583	+		DZA65_RS14185	0.56	+2.8
3,041,584	-		DZA65_RS14185	0.56	-0.8
3,041,584	-		DZA65_RS14185	0.56	+0.7
3,041,584	-		DZA65_RS14185	0.56	+0.2
3,041,584	-		DZA65_RS14185	0.56	-1.1
3,041,584	-		DZA65_RS14185	0.56	-0.1
3,041,584	-		DZA65_RS14185	0.56	+0.1
3,041,584	-		DZA65_RS14185	0.56	-0.5
3,041,584	-		DZA65_RS14185	0.56	-2.1
3,041,584	-		DZA65_RS14185	0.56	-0.6
3,041,584	-		DZA65_RS14185	0.56	+0.2
3,041,584	-		DZA65_RS14185	0.56	-0.1
3,041,584	-		DZA65_RS14185	0.56	+0.7
3,041,584	-		DZA65_RS14185	0.56	-0.7
3,041,584	-		DZA65_RS14185	0.56	-2.1
3,041,584	-		DZA65_RS14185	0.56	-0.3
3,041,584	-		DZA65_RS14185	0.56	-1.5
3,041,586	-				+1.9
3,041,586	-		DZA65_RS14185	0.56	+1.0
3,041,586	-		DZA65_RS14185	0.56	-1.1
3,041,586	-		DZA65_RS14185	0.56	-0.5
3,041,586	-		DZA65_RS14185	0.56	-0.5
3,041,586	-		DZA65_RS14185	0.56	-0.6
3,041,586	-		DZA65_RS14185	0.56	+0.6
3,041,586	-		DZA65_RS14185	0.56	+0.0
3,041,586	-		DZA65_RS14185	0.56	-0.8
3,041,586	-		DZA65_RS14185	0.56	-1.8
3,041,744	+		DZA65_RS14185	0.67	-0.1
3,041,744	+		DZA65_RS14185	0.67	-1.0
3,041,744	+		DZA65_RS14185	0.67	-0.5
3,041,745	-		DZA65_RS14185	0.67	+0.7
3,041,813	+		DZA65_RS14185	0.72	+0.1
3,041,813	+		DZA65_RS14185	0.72	+0.5
3,041,814	-		DZA65_RS14185	0.72	-0.2
3,041,814	-		DZA65_RS14185	0.72	+0.7
3,041,815	+		DZA65_RS14185	0.72	+0.5
3,041,815	+		DZA65_RS14185	0.72	-1.1
3,041,815	+		DZA65_RS14185	0.72	-1.4
3,041,815	+		DZA65_RS14185	0.72	-2.1
3,041,815	+		DZA65_RS14185	0.72	-3.1
3,041,815	+		DZA65_RS14185	0.72	-2.3
3,041,815	+		DZA65_RS14185	0.72	-1.5
3,041,816	-		DZA65_RS14185	0.72	-0.5
3,041,816	-		DZA65_RS14185	0.72	+0.2
3,041,816	-		DZA65_RS14185	0.72	-0.0
3,042,058	+		DZA65_RS14185	0.89	-1.8
3,042,058	+		DZA65_RS14185	0.89	-2.5
3,042,059	-		DZA65_RS14185	0.89	+0.4
3,042,059	-		DZA65_RS14185	0.89	-0.2
3,042,076	+		DZA65_RS14185	0.90	+0.3
3,042,076	+		DZA65_RS14185	0.90	-0.7
3,042,076	+		DZA65_RS14185	0.90	-0.5
3,042,076	+		DZA65_RS14185	0.90	-1.5
3,042,077	-				-0.8
3,042,077	-				-0.3
3,042,077	-				-0.2
3,042,077	-				+1.9
3,042,077	-				+0.7
3,042,077	-				-1.6
3,042,082	+				-0.1
3,042,082	+				-2.5
3,042,082	+				+0.9
3,042,082	+				-0.7
3,042,082	+				+1.5
3,042,082	+				-0.5
3,042,082	+				+0.0
3,042,083	-				-0.8
3,042,083	-				-1.1
3,042,083	-				+2.7
3,042,083	-				-1.0
3,042,083	-				+3.9
3,042,083	-				-0.5
3,042,083	-				+0.4
3,042,083	-				-1.8
3,042,086	+				-0.5
3,042,086	+				+1.2
3,042,087	-				+0.3
3,042,094	+				+0.9
3,042,180	+				-2.2
3,042,180	+				+0.5
3,042,180	+				-0.8
3,042,180	+				-0.1
3,042,180	+				-1.1
3,042,180	+				-0.9
3,042,181	-				-0.2
3,042,181	-				+0.5
3,042,181	-				+0.7
3,042,181	-				-1.1
3,042,261	-				-0.9
3,042,267	-				+2.8
3,042,267	-				-0.7
3,042,267	-				-1.2
3,042,267	-				+0.2
3,042,288	+				-1.9
3,042,302	+				-1.2
3,042,329	+				+2.4
3,042,329	+				-1.1
3,042,329	+				-0.2
3,042,329	+				+1.3
3,042,330	-				-0.5
3,042,330	-				-0.1
3,042,333	+				-2.5
3,042,333	+				+0.1
3,042,333	+				+1.2
3,042,333	+				-2.1
3,042,333	+				+0.3
3,042,334	-				-3.0
3,042,334	-				+1.5
3,042,334	-				-0.3
3,042,334	-				+0.8
3,042,334	-				+0.4
3,042,334	-				-0.7
3,042,334	-				+2.5
3,042,334	-				-0.8
3,042,334	-				+3.1
3,042,334	-				-0.5
3,042,336	+				-2.1
3,042,337	-				-0.7
3,042,337	-				-0.4
3,042,398	+		DZA65_RS14190	0.16	+0.1
3,042,399	-		DZA65_RS14190	0.16	-1.1
3,042,399	-		DZA65_RS14190	0.16	-0.9
3,042,407	+		DZA65_RS14190	0.17	+1.5
3,042,407	+		DZA65_RS14190	0.17	+0.2
3,042,407	+		DZA65_RS14190	0.17	+1.3
3,042,407	+		DZA65_RS14190	0.17	+0.5
3,042,407	+		DZA65_RS14190	0.17	+0.3
3,042,407	+		DZA65_RS14190	0.17	-0.5
3,042,432	+		DZA65_RS14190	0.20	+0.3
3,042,433	-		DZA65_RS14190	0.20	+0.0
3,042,433	-		DZA65_RS14190	0.20	-0.1
3,042,433	-		DZA65_RS14190	0.20	+0.5
3,042,433	-		DZA65_RS14190	0.20	+0.6
3,042,437	+		DZA65_RS14190	0.21	-2.1
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