Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09480

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS09470 and DZA65_RS09475 are separated by 25 nucleotidesDZA65_RS09475 and DZA65_RS09480 are separated by 185 nucleotidesDZA65_RS09480 and DZA65_RS22850 are separated by 67 nucleotidesDZA65_RS22850 and DZA65_RS09485 are separated by 0 nucleotidesDZA65_RS09485 and DZA65_RS09490 are separated by 157 nucleotides DZA65_RS09470: DZA65_RS09470 - sensor histidine kinase, at 1,990,634 to 1,992,334 _RS09470 DZA65_RS09475: DZA65_RS09475 - response regulator transcription factor, at 1,992,360 to 1,993,094 _RS09475 DZA65_RS09480: DZA65_RS09480 - OFA family MFS transporter, at 1,993,280 to 1,994,497 _RS09480 DZA65_RS22850: DZA65_RS22850 - hypothetical protein, at 1,994,565 to 1,994,714 _RS22850 DZA65_RS09485: DZA65_RS09485 - 50S ribosomal protein L25, at 1,994,715 to 1,995,002 _RS09485 DZA65_RS09490: DZA65_RS09490 - DEAD/DEAH box helicase, at 1,995,160 to 1,996,965 _RS09490 Position (kb) 1993 1994 1995Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1992.313 kb on + strandat 1992.314 kb on - strandat 1992.417 kb on - strandat 1992.589 kb on + strand, within DZA65_RS09475at 1992.589 kb on + strand, within DZA65_RS09475at 1992.590 kb on - strand, within DZA65_RS09475at 1992.651 kb on + strand, within DZA65_RS09475at 1992.651 kb on + strand, within DZA65_RS09475at 1992.651 kb on + strand, within DZA65_RS09475at 1992.651 kb on + strand, within DZA65_RS09475at 1992.652 kb on - strand, within DZA65_RS09475at 1992.652 kb on - strand, within DZA65_RS09475at 1992.652 kb on - strand, within DZA65_RS09475at 1992.652 kb on - strand, within DZA65_RS09475at 1992.652 kb on - strand, within DZA65_RS09475at 1992.652 kb on - strand, within DZA65_RS09475at 1992.653 kb on + strand, within DZA65_RS09475at 1992.653 kb on + strand, within DZA65_RS09475at 1992.653 kb on + strand, within DZA65_RS09475at 1992.653 kb on + strand, within DZA65_RS09475at 1992.666 kb on + strand, within DZA65_RS09475at 1992.667 kb on - strand, within DZA65_RS09475at 1992.791 kb on + strand, within DZA65_RS09475at 1992.791 kb on + strand, within DZA65_RS09475at 1992.821 kb on + strand, within DZA65_RS09475at 1992.821 kb on + strand, within DZA65_RS09475at 1992.821 kb on + strand, within DZA65_RS09475at 1992.822 kb on - strand, within DZA65_RS09475at 1992.822 kb on - strand, within DZA65_RS09475at 1992.825 kb on + strand, within DZA65_RS09475at 1992.825 kb on + strand, within DZA65_RS09475at 1992.825 kb on + strand, within DZA65_RS09475at 1992.825 kb on + strand, within DZA65_RS09475at 1992.825 kb on + strand, within DZA65_RS09475at 1992.825 kb on + strand, within DZA65_RS09475at 1992.825 kb on + strand, within DZA65_RS09475at 1992.825 kb on + strand, within DZA65_RS09475at 1992.825 kb on + strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.826 kb on - strand, within DZA65_RS09475at 1992.828 kb on + strand, within DZA65_RS09475at 1992.828 kb on + strand, within DZA65_RS09475at 1992.861 kb on + strand, within DZA65_RS09475at 1992.862 kb on - strand, within DZA65_RS09475at 1992.931 kb on - strand, within DZA65_RS09475at 1992.931 kb on - strand, within DZA65_RS09475at 1992.931 kb on - strand, within DZA65_RS09475at 1992.955 kb on - strand, within DZA65_RS09475at 1992.967 kb on + strand, within DZA65_RS09475at 1992.967 kb on + strand, within DZA65_RS09475at 1992.967 kb on + strand, within DZA65_RS09475at 1992.968 kb on - strand, within DZA65_RS09475at 1992.968 kb on - strand, within DZA65_RS09475at 1992.968 kb on - strand, within DZA65_RS09475at 1992.968 kb on - strand, within DZA65_RS09475at 1992.968 kb on - strand, within DZA65_RS09475at 1992.968 kb on - strand, within DZA65_RS09475at 1993.004 kb on + strand, within DZA65_RS09475at 1993.004 kb on + strand, within DZA65_RS09475at 1993.004 kb on + strand, within DZA65_RS09475at 1993.004 kb on + strand, within DZA65_RS09475at 1993.004 kb on + strand, within DZA65_RS09475at 1993.004 kb on + strand, within DZA65_RS09475at 1993.004 kb on + strand, within DZA65_RS09475at 1993.004 kb on + strand, within DZA65_RS09475at 1993.004 kb on + strand, within DZA65_RS09475at 1993.005 kb on - strand, within DZA65_RS09475at 1993.005 kb on - strand, within DZA65_RS09475at 1993.005 kb on - strand, within DZA65_RS09475at 1993.005 kb on - strand, within DZA65_RS09475at 1993.005 kb on - strand, within DZA65_RS09475at 1993.005 kb on - strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.008 kb on + strand, within DZA65_RS09475at 1993.009 kb on - strand, within DZA65_RS09475at 1993.009 kb on - strand, within DZA65_RS09475at 1993.009 kb on - strandat 1993.009 kb on - strand, within DZA65_RS09475at 1993.009 kb on - strand, within DZA65_RS09475at 1993.009 kb on - strand, within DZA65_RS09475at 1993.009 kb on - strand, within DZA65_RS09475at 1993.009 kb on - strand, within DZA65_RS09475at 1993.009 kb on - strand, within DZA65_RS09475at 1993.010 kb on + strand, within DZA65_RS09475at 1993.184 kb on + strandat 1993.184 kb on + strandat 1993.184 kb on + strandat 1993.202 kb on - strandat 1993.212 kb on + strandat 1993.212 kb on + strandat 1993.212 kb on + strandat 1993.213 kb on - strandat 1993.214 kb on + strandat 1993.214 kb on + strandat 1993.214 kb on + strandat 1993.214 kb on + strandat 1993.214 kb on + strandat 1993.214 kb on + strandat 1993.229 kb on + strandat 1993.247 kb on + strandat 1993.248 kb on - strandat 1993.296 kb on + strandat 1993.296 kb on + strandat 1993.304 kb on - strandat 1993.304 kb on - strandat 1993.309 kb on + strandat 1993.310 kb on - strandat 1993.310 kb on - strandat 1993.312 kb on + strandat 1993.312 kb on + strandat 1993.312 kb on + strandat 1993.312 kb on + strandat 1993.313 kb on - strandat 1993.355 kb on + strandat 1993.355 kb on + strandat 1993.356 kb on - strandat 1993.356 kb on - strandat 1993.356 kb on - strandat 1993.370 kb on + strandat 1993.370 kb on + strandat 1993.370 kb on + strandat 1993.391 kb on - strandat 1993.625 kb on + strand, within DZA65_RS09480at 1993.626 kb on - strand, within DZA65_RS09480at 1993.626 kb on - strand, within DZA65_RS09480at 1993.651 kb on + strand, within DZA65_RS09480at 1993.651 kb on + strand, within DZA65_RS09480at 1993.651 kb on + strand, within DZA65_RS09480at 1993.652 kb on - strand, within DZA65_RS09480at 1993.652 kb on - strand, within DZA65_RS09480at 1993.652 kb on - strand, within DZA65_RS09480at 1993.730 kb on + strand, within DZA65_RS09480at 1993.730 kb on + strand, within DZA65_RS09480at 1993.730 kb on + strand, within DZA65_RS09480at 1993.730 kb on + strand, within DZA65_RS09480at 1993.731 kb on - strand, within DZA65_RS09480at 1993.889 kb on - strand, within DZA65_RS09480at 1993.967 kb on + strand, within DZA65_RS09480at 1993.967 kb on + strand, within DZA65_RS09480at 1993.967 kb on + strand, within DZA65_RS09480at 1993.968 kb on - strand, within DZA65_RS09480at 1993.968 kb on - strand, within DZA65_RS09480at 1993.968 kb on - strand, within DZA65_RS09480at 1994.088 kb on - strand, within DZA65_RS09480at 1994.088 kb on - strand, within DZA65_RS09480at 1994.104 kb on - strand, within DZA65_RS09480at 1994.203 kb on + strand, within DZA65_RS09480at 1994.233 kb on + strand, within DZA65_RS09480at 1994.236 kb on + strand, within DZA65_RS09480at 1994.236 kb on + strand, within DZA65_RS09480at 1994.236 kb on + strand, within DZA65_RS09480at 1994.237 kb on - strand, within DZA65_RS09480at 1994.237 kb on - strand, within DZA65_RS09480at 1994.237 kb on - strand, within DZA65_RS09480at 1994.237 kb on - strand, within DZA65_RS09480at 1994.246 kb on + strand, within DZA65_RS09480at 1994.348 kb on - strand, within DZA65_RS09480at 1994.383 kb on + strandat 1994.383 kb on + strandat 1994.383 kb on + strandat 1994.383 kb on + strandat 1994.519 kb on - strandat 1994.529 kb on + strandat 1994.529 kb on + strandat 1994.529 kb on + strandat 1994.530 kb on - strandat 1994.531 kb on + strandat 1994.532 kb on - strandat 1994.532 kb on - strandat 1994.532 kb on - strandat 1994.598 kb on + strand, within DZA65_RS22850at 1995.146 kb on - strandat 1995.146 kb on - strandat 1995.146 kb on - strandat 1995.363 kb on + strand, within DZA65_RS09490at 1995.364 kb on - strand, within DZA65_RS09490at 1995.432 kb on - strand, within DZA65_RS09490at 1995.432 kb on - strand, within DZA65_RS09490at 1995.432 kb on - strand, within DZA65_RS09490at 1995.432 kb on - strand, within DZA65_RS09490at 1995.435 kb on - strand, within DZA65_RS09490at 1995.435 kb on - strand, within DZA65_RS09490at 1995.435 kb on - strand, within DZA65_RS09490at 1995.435 kb on - strand, within DZA65_RS09490at 1995.435 kb on - strand, within DZA65_RS09490

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,992,313 + -0.4
1,992,314 - +0.2
1,992,417 - -0.3
1,992,589 + DZA65_RS09475 0.31 +0.1
1,992,589 + DZA65_RS09475 0.31 -1.2
1,992,590 - DZA65_RS09475 0.31 +0.3
1,992,651 + DZA65_RS09475 0.40 +1.0
1,992,651 + DZA65_RS09475 0.40 -0.3
1,992,651 + DZA65_RS09475 0.40 -0.8
1,992,651 + DZA65_RS09475 0.40 -1.6
1,992,652 - DZA65_RS09475 0.40 -0.2
1,992,652 - DZA65_RS09475 0.40 -0.3
1,992,652 - DZA65_RS09475 0.40 +1.6
1,992,652 - DZA65_RS09475 0.40 -0.1
1,992,652 - DZA65_RS09475 0.40 +1.0
1,992,652 - DZA65_RS09475 0.40 -3.0
1,992,653 + DZA65_RS09475 0.40 -1.1
1,992,653 + DZA65_RS09475 0.40 -1.2
1,992,653 + DZA65_RS09475 0.40 -1.6
1,992,653 + DZA65_RS09475 0.40 +0.1
1,992,666 + DZA65_RS09475 0.42 +1.4
1,992,667 - DZA65_RS09475 0.42 +0.8
1,992,791 + DZA65_RS09475 0.59 -1.4
1,992,791 + DZA65_RS09475 0.59 -0.3
1,992,821 + DZA65_RS09475 0.63 +0.2
1,992,821 + DZA65_RS09475 0.63 -0.7
1,992,821 + DZA65_RS09475 0.63 +0.9
1,992,822 - DZA65_RS09475 0.63 -1.8
1,992,822 - DZA65_RS09475 0.63 +0.4
1,992,825 + DZA65_RS09475 0.63 -0.7
1,992,825 + DZA65_RS09475 0.63 +0.4
1,992,825 + DZA65_RS09475 0.63 -0.1
1,992,825 + DZA65_RS09475 0.63 +2.7
1,992,825 + DZA65_RS09475 0.63 -0.2
1,992,825 + DZA65_RS09475 0.63 -0.0
1,992,825 + DZA65_RS09475 0.63 -2.2
1,992,825 + DZA65_RS09475 0.63 -0.1
1,992,825 + DZA65_RS09475 0.63 +1.6
1,992,826 - DZA65_RS09475 0.63 -0.4
1,992,826 - DZA65_RS09475 0.63 +0.1
1,992,826 - DZA65_RS09475 0.63 -2.2
1,992,826 - DZA65_RS09475 0.63 -0.4
1,992,826 - DZA65_RS09475 0.63 -0.4
1,992,826 - DZA65_RS09475 0.63 -0.7
1,992,826 - DZA65_RS09475 0.63 +0.8
1,992,826 - DZA65_RS09475 0.63 -0.6
1,992,826 - DZA65_RS09475 0.63 +0.7
1,992,826 - DZA65_RS09475 0.63 -0.3
1,992,826 - DZA65_RS09475 0.63 +0.4
1,992,826 - DZA65_RS09475 0.63 -0.4
1,992,828 + DZA65_RS09475 0.64 +0.1
1,992,828 + DZA65_RS09475 0.64 +0.2
1,992,861 + DZA65_RS09475 0.68 +0.6
1,992,862 - DZA65_RS09475 0.68 -0.7
1,992,931 - DZA65_RS09475 0.78 +3.6
1,992,931 - DZA65_RS09475 0.78 -0.7
1,992,931 - DZA65_RS09475 0.78 +0.4
1,992,955 - DZA65_RS09475 0.81 +0.4
1,992,967 + DZA65_RS09475 0.83 -0.1
1,992,967 + DZA65_RS09475 0.83 +0.4
1,992,967 + DZA65_RS09475 0.83 -0.2
1,992,968 - DZA65_RS09475 0.83 -1.4
1,992,968 - DZA65_RS09475 0.83 -0.5
1,992,968 - DZA65_RS09475 0.83 -0.6
1,992,968 - DZA65_RS09475 0.83 -1.2
1,992,968 - DZA65_RS09475 0.83 -0.3
1,992,968 - DZA65_RS09475 0.83 -0.4
1,993,004 + DZA65_RS09475 0.88 +0.9
1,993,004 + DZA65_RS09475 0.88 -0.2
1,993,004 + DZA65_RS09475 0.88 -1.2
1,993,004 + DZA65_RS09475 0.88 -0.2
1,993,004 + DZA65_RS09475 0.88 +1.2
1,993,004 + DZA65_RS09475 0.88 -0.1
1,993,004 + DZA65_RS09475 0.88 +0.0
1,993,004 + DZA65_RS09475 0.88 +1.3
1,993,004 + DZA65_RS09475 0.88 -0.4
1,993,005 - DZA65_RS09475 0.88 +1.9
1,993,005 - DZA65_RS09475 0.88 +0.8
1,993,005 - DZA65_RS09475 0.88 +0.3
1,993,005 - DZA65_RS09475 0.88 +1.8
1,993,005 - DZA65_RS09475 0.88 -0.8
1,993,005 - DZA65_RS09475 0.88 -0.4
1,993,008 + DZA65_RS09475 0.88 -1.6
1,993,008 + DZA65_RS09475 0.88 -1.0
1,993,008 + DZA65_RS09475 0.88 +0.3
1,993,008 + DZA65_RS09475 0.88 -0.4
1,993,008 + DZA65_RS09475 0.88 +0.4
1,993,008 + DZA65_RS09475 0.88 -1.2
1,993,008 + DZA65_RS09475 0.88 +0.1
1,993,008 + DZA65_RS09475 0.88 +1.2
1,993,008 + DZA65_RS09475 0.88 -0.4
1,993,008 + DZA65_RS09475 0.88 -0.5
1,993,008 + DZA65_RS09475 0.88 -0.0
1,993,008 + DZA65_RS09475 0.88 +0.0
1,993,009 - DZA65_RS09475 0.88 +0.4
1,993,009 - DZA65_RS09475 0.88 +0.1
1,993,009 - +0.0
1,993,009 - DZA65_RS09475 0.88 +0.0
1,993,009 - DZA65_RS09475 0.88 -1.7
1,993,009 - DZA65_RS09475 0.88 +0.8
1,993,009 - DZA65_RS09475 0.88 +0.1
1,993,009 - DZA65_RS09475 0.88 -0.6
1,993,009 - DZA65_RS09475 0.88 -0.2
1,993,010 + DZA65_RS09475 0.88 -0.6
1,993,184 + +1.2
1,993,184 + -0.7
1,993,184 + -2.2
1,993,202 - +0.4
1,993,212 + +0.4
1,993,212 + +0.8
1,993,212 + -0.1
1,993,213 - -0.2
1,993,214 + +0.2
1,993,214 + +0.7
1,993,214 + +0.4
1,993,214 + -0.7
1,993,214 + -0.6
1,993,214 + -0.9
1,993,229 + -0.3
1,993,247 + -0.0
1,993,248 - +0.3
1,993,296 + -0.6
1,993,296 + +1.4
1,993,304 - +1.7
1,993,304 - +1.1
1,993,309 + -0.3
1,993,310 - +1.2
1,993,310 - +0.2
1,993,312 + -0.1
1,993,312 + -1.2
1,993,312 + -1.2
1,993,312 + -0.2
1,993,313 - -0.7
1,993,355 + -0.9
1,993,355 + -2.4
1,993,356 - +0.8
1,993,356 - +0.0
1,993,356 - -1.2
1,993,370 + +0.1
1,993,370 + -0.8
1,993,370 + -2.0
1,993,391 - -0.8
1,993,625 + DZA65_RS09480 0.28 -0.2
1,993,626 - DZA65_RS09480 0.28 -0.4
1,993,626 - DZA65_RS09480 0.28 +0.6
1,993,651 + DZA65_RS09480 0.30 -0.6
1,993,651 + DZA65_RS09480 0.30 +0.2
1,993,651 + DZA65_RS09480 0.30 -0.9
1,993,652 - DZA65_RS09480 0.31 -2.7
1,993,652 - DZA65_RS09480 0.31 +1.0
1,993,652 - DZA65_RS09480 0.31 +0.6
1,993,730 + DZA65_RS09480 0.37 -0.6
1,993,730 + DZA65_RS09480 0.37 +0.2
1,993,730 + DZA65_RS09480 0.37 +0.0
1,993,730 + DZA65_RS09480 0.37 -1.6
1,993,731 - DZA65_RS09480 0.37 +1.0
1,993,889 - DZA65_RS09480 0.50 -1.0
1,993,967 + DZA65_RS09480 0.56 +0.4
1,993,967 + DZA65_RS09480 0.56 -2.3
1,993,967 + DZA65_RS09480 0.56 -0.8
1,993,968 - DZA65_RS09480 0.56 +1.7
1,993,968 - DZA65_RS09480 0.56 +1.3
1,993,968 - DZA65_RS09480 0.56 +0.9
1,994,088 - DZA65_RS09480 0.66 -1.3
1,994,088 - DZA65_RS09480 0.66 +1.6
1,994,104 - DZA65_RS09480 0.68 +1.4
1,994,203 + DZA65_RS09480 0.76 +0.4
1,994,233 + DZA65_RS09480 0.78 +1.0
1,994,236 + DZA65_RS09480 0.78 -1.4
1,994,236 + DZA65_RS09480 0.78 +1.3
1,994,236 + DZA65_RS09480 0.78 -0.6
1,994,237 - DZA65_RS09480 0.79 +0.5
1,994,237 - DZA65_RS09480 0.79 -0.3
1,994,237 - DZA65_RS09480 0.79 +0.0
1,994,237 - DZA65_RS09480 0.79 -0.9
1,994,246 + DZA65_RS09480 0.79 +0.4
1,994,348 - DZA65_RS09480 0.88 +0.3
1,994,383 + +1.4
1,994,383 + -1.2
1,994,383 + -1.0
1,994,383 + +0.2
1,994,519 - +0.1
1,994,529 + +0.3
1,994,529 + +1.6
1,994,529 + +0.3
1,994,530 - +0.6
1,994,531 + +1.4
1,994,532 - +0.9
1,994,532 - +0.1
1,994,532 - +2.1
1,994,598 + DZA65_RS22850 0.22 -0.2
1,995,146 - -0.3
1,995,146 - -2.0
1,995,146 - +0.1
1,995,363 + DZA65_RS09490 0.11 -0.2
1,995,364 - DZA65_RS09490 0.11 -0.9
1,995,432 - DZA65_RS09490 0.15 +2.8
1,995,432 - DZA65_RS09490 0.15 -0.7
1,995,432 - DZA65_RS09490 0.15 -1.2
1,995,432 - DZA65_RS09490 0.15 -0.5
1,995,435 - DZA65_RS09490 0.15 -1.2
1,995,435 - DZA65_RS09490 0.15 -0.6
1,995,435 - DZA65_RS09490 0.15 -0.6
1,995,435 - DZA65_RS09490 0.15 -0.8
1,995,435 - DZA65_RS09490 0.15 +0.2

Or see this region's nucleotide sequence