Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09325

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS09315 and DZA65_RS09320 are separated by 5 nucleotidesDZA65_RS09320 and DZA65_RS09325 are separated by 7 nucleotidesDZA65_RS09325 and DZA65_RS09330 overlap by 11 nucleotides DZA65_RS09315: DZA65_RS09315 - ABC transporter permease, at 1,965,451 to 1,966,422 _RS09315 DZA65_RS09320: DZA65_RS09320 - ABC transporter permease, at 1,966,428 to 1,967,273 _RS09320 DZA65_RS09325: DZA65_RS09325 - ATP-binding cassette domain-containing protein, at 1,967,281 to 1,968,270 _RS09325 DZA65_RS09330: DZA65_RS09330 - ATP-binding cassette domain-containing protein, at 1,968,260 to 1,969,237 _RS09330 Position (kb) 1967 1968 1969Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1966.366 kb on + strandat 1966.367 kb on - strandat 1966.367 kb on - strandat 1966.633 kb on - strand, within DZA65_RS09320at 1966.633 kb on - strand, within DZA65_RS09320at 1966.633 kb on - strand, within DZA65_RS09320at 1966.633 kb on - strand, within DZA65_RS09320at 1966.651 kb on - strand, within DZA65_RS09320at 1966.782 kb on - strand, within DZA65_RS09320at 1966.782 kb on - strand, within DZA65_RS09320at 1966.830 kb on + strand, within DZA65_RS09320at 1966.830 kb on + strand, within DZA65_RS09320at 1966.831 kb on - strand, within DZA65_RS09320at 1966.831 kb on - strand, within DZA65_RS09320at 1966.831 kb on - strand, within DZA65_RS09320at 1966.831 kb on - strand, within DZA65_RS09320at 1966.856 kb on + strand, within DZA65_RS09320at 1966.856 kb on + strand, within DZA65_RS09320at 1966.856 kb on + strand, within DZA65_RS09320at 1966.856 kb on + strand, within DZA65_RS09320at 1966.857 kb on - strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.938 kb on + strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.939 kb on - strand, within DZA65_RS09320at 1966.947 kb on + strand, within DZA65_RS09320at 1966.994 kb on + strand, within DZA65_RS09320at 1966.994 kb on + strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1966.995 kb on - strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.018 kb on + strand, within DZA65_RS09320at 1967.019 kb on - strand, within DZA65_RS09320at 1967.019 kb on - strand, within DZA65_RS09320at 1967.021 kb on + strand, within DZA65_RS09320at 1967.021 kb on + strand, within DZA65_RS09320at 1967.022 kb on - strand, within DZA65_RS09320at 1967.022 kb on - strand, within DZA65_RS09320at 1967.022 kb on - strand, within DZA65_RS09320at 1967.022 kb on - strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.145 kb on + strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.146 kb on - strand, within DZA65_RS09320at 1967.147 kb on + strand, within DZA65_RS09320at 1967.148 kb on - strand, within DZA65_RS09320at 1967.148 kb on - strand, within DZA65_RS09320at 1967.213 kb on + strandat 1967.213 kb on + strandat 1967.213 kb on + strandat 1967.213 kb on + strandat 1967.214 kb on - strandat 1967.221 kb on + strandat 1967.294 kb on + strandat 1967.294 kb on + strandat 1967.295 kb on - strandat 1967.437 kb on - strand, within DZA65_RS09325at 1967.437 kb on - strand, within DZA65_RS09325at 1967.437 kb on - strand, within DZA65_RS09325at 1967.725 kb on + strand, within DZA65_RS09325at 1967.847 kb on + strand, within DZA65_RS09325at 1967.848 kb on - strand, within DZA65_RS09325at 1967.875 kb on - strand, within DZA65_RS09325at 1967.875 kb on - strand, within DZA65_RS09325at 1967.875 kb on - strand, within DZA65_RS09325at 1967.917 kb on - strand, within DZA65_RS09325at 1967.968 kb on + strand, within DZA65_RS09325at 1967.968 kb on + strand, within DZA65_RS09325at 1967.968 kb on + strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1967.969 kb on - strand, within DZA65_RS09325at 1968.031 kb on + strand, within DZA65_RS09325at 1968.031 kb on + strand, within DZA65_RS09325at 1968.031 kb on + strand, within DZA65_RS09325at 1968.031 kb on + strand, within DZA65_RS09325at 1968.166 kb on - strand, within DZA65_RS09325at 1968.224 kb on + strandat 1968.224 kb on + strandat 1968.225 kb on - strandat 1968.290 kb on - strandat 1968.308 kb on + strandat 1968.311 kb on + strandat 1968.503 kb on - strand, within DZA65_RS09330at 1968.572 kb on + strand, within DZA65_RS09330at 1968.638 kb on + strand, within DZA65_RS09330at 1968.639 kb on - strand, within DZA65_RS09330at 1968.754 kb on + strand, within DZA65_RS09330at 1968.754 kb on + strand, within DZA65_RS09330at 1968.755 kb on - strand, within DZA65_RS09330at 1968.887 kb on + strand, within DZA65_RS09330at 1968.888 kb on - strand, within DZA65_RS09330at 1968.888 kb on - strand, within DZA65_RS09330at 1968.888 kb on - strand, within DZA65_RS09330at 1968.895 kb on + strand, within DZA65_RS09330at 1968.895 kb on + strand, within DZA65_RS09330at 1968.895 kb on + strand, within DZA65_RS09330at 1968.896 kb on - strand, within DZA65_RS09330at 1968.896 kb on - strand, within DZA65_RS09330at 1968.925 kb on + strand, within DZA65_RS09330at 1968.925 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.950 kb on + strand, within DZA65_RS09330at 1968.951 kb on - strand, within DZA65_RS09330at 1968.951 kb on - strand, within DZA65_RS09330at 1968.951 kb on - strand, within DZA65_RS09330at 1968.951 kb on - strand, within DZA65_RS09330at 1968.951 kb on - strand, within DZA65_RS09330at 1968.951 kb on - strand, within DZA65_RS09330at 1968.951 kb on - strand, within DZA65_RS09330at 1968.951 kb on - strand, within DZA65_RS09330at 1968.992 kb on + strand, within DZA65_RS09330at 1968.992 kb on + strand, within DZA65_RS09330at 1968.992 kb on + strand, within DZA65_RS09330at 1968.992 kb on + strand, within DZA65_RS09330at 1968.992 kb on + strand, within DZA65_RS09330at 1968.992 kb on + strandat 1968.992 kb on + strand, within DZA65_RS09330at 1968.992 kb on + strand, within DZA65_RS09330at 1968.992 kb on + strand, within DZA65_RS09330at 1968.992 kb on + strand, within DZA65_RS09330at 1968.992 kb on + strand, within DZA65_RS09330at 1968.993 kb on - strand, within DZA65_RS09330at 1968.993 kb on - strand, within DZA65_RS09330at 1968.993 kb on - strand, within DZA65_RS09330at 1968.993 kb on - strand, within DZA65_RS09330at 1968.993 kb on - strand, within DZA65_RS09330at 1968.993 kb on - strand, within DZA65_RS09330at 1969.013 kb on + strand, within DZA65_RS09330at 1969.014 kb on - strand, within DZA65_RS09330at 1969.014 kb on - strand, within DZA65_RS09330at 1969.121 kb on + strand, within DZA65_RS09330at 1969.121 kb on + strand, within DZA65_RS09330at 1969.121 kb on + strand, within DZA65_RS09330at 1969.121 kb on + strand, within DZA65_RS09330at 1969.121 kb on + strand, within DZA65_RS09330at 1969.121 kb on + strand, within DZA65_RS09330at 1969.122 kb on - strand, within DZA65_RS09330

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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1,966,366 + -0.6
1,966,367 - -0.2
1,966,367 - +0.2
1,966,633 - DZA65_RS09320 0.24 -0.6
1,966,633 - DZA65_RS09320 0.24 +2.8
1,966,633 - DZA65_RS09320 0.24 +1.0
1,966,633 - DZA65_RS09320 0.24 -0.7
1,966,651 - DZA65_RS09320 0.26 -0.4
1,966,782 - DZA65_RS09320 0.42 +1.1
1,966,782 - DZA65_RS09320 0.42 -0.3
1,966,830 + DZA65_RS09320 0.48 +1.6
1,966,830 + DZA65_RS09320 0.48 -0.3
1,966,831 - DZA65_RS09320 0.48 +0.4
1,966,831 - DZA65_RS09320 0.48 -1.4
1,966,831 - DZA65_RS09320 0.48 -1.4
1,966,831 - DZA65_RS09320 0.48 -0.6
1,966,856 + DZA65_RS09320 0.51 -0.3
1,966,856 + DZA65_RS09320 0.51 +0.0
1,966,856 + DZA65_RS09320 0.51 -0.1
1,966,856 + DZA65_RS09320 0.51 -0.0
1,966,857 - DZA65_RS09320 0.51 -1.0
1,966,938 + DZA65_RS09320 0.60 +1.3
1,966,938 + DZA65_RS09320 0.60 +0.5
1,966,938 + DZA65_RS09320 0.60 -0.4
1,966,938 + DZA65_RS09320 0.60 +1.0
1,966,938 + DZA65_RS09320 0.60 -0.3
1,966,939 - DZA65_RS09320 0.60 -1.6
1,966,939 - DZA65_RS09320 0.60 +2.0
1,966,939 - DZA65_RS09320 0.60 +0.9
1,966,939 - DZA65_RS09320 0.60 +1.4
1,966,939 - DZA65_RS09320 0.60 -0.1
1,966,947 + DZA65_RS09320 0.61 -1.0
1,966,994 + DZA65_RS09320 0.67 +0.9
1,966,994 + DZA65_RS09320 0.67 -0.9
1,966,995 - DZA65_RS09320 0.67 -0.6
1,966,995 - DZA65_RS09320 0.67 -2.1
1,966,995 - DZA65_RS09320 0.67 -0.1
1,966,995 - DZA65_RS09320 0.67 +0.2
1,966,995 - DZA65_RS09320 0.67 +1.9
1,966,995 - DZA65_RS09320 0.67 +0.7
1,966,995 - DZA65_RS09320 0.67 +0.3
1,967,018 + DZA65_RS09320 0.70 -1.6
1,967,018 + DZA65_RS09320 0.70 +0.9
1,967,018 + DZA65_RS09320 0.70 +0.4
1,967,018 + DZA65_RS09320 0.70 +0.0
1,967,018 + DZA65_RS09320 0.70 -1.4
1,967,018 + DZA65_RS09320 0.70 +0.7
1,967,018 + DZA65_RS09320 0.70 -0.1
1,967,018 + DZA65_RS09320 0.70 +0.1
1,967,018 + DZA65_RS09320 0.70 +0.3
1,967,019 - DZA65_RS09320 0.70 +0.2
1,967,019 - DZA65_RS09320 0.70 -0.6
1,967,021 + DZA65_RS09320 0.70 +0.9
1,967,021 + DZA65_RS09320 0.70 -0.9
1,967,022 - DZA65_RS09320 0.70 +1.1
1,967,022 - DZA65_RS09320 0.70 -0.4
1,967,022 - DZA65_RS09320 0.70 -0.7
1,967,022 - DZA65_RS09320 0.70 -1.6
1,967,145 + DZA65_RS09320 0.85 +0.2
1,967,145 + DZA65_RS09320 0.85 -0.0
1,967,145 + DZA65_RS09320 0.85 -0.6
1,967,145 + DZA65_RS09320 0.85 -0.3
1,967,145 + DZA65_RS09320 0.85 +2.0
1,967,145 + DZA65_RS09320 0.85 +0.1
1,967,145 + DZA65_RS09320 0.85 +1.1
1,967,145 + DZA65_RS09320 0.85 -0.4
1,967,145 + DZA65_RS09320 0.85 -0.2
1,967,146 - DZA65_RS09320 0.85 +1.2
1,967,146 - DZA65_RS09320 0.85 -0.3
1,967,146 - DZA65_RS09320 0.85 -0.8
1,967,146 - DZA65_RS09320 0.85 +0.8
1,967,146 - DZA65_RS09320 0.85 +0.4
1,967,146 - DZA65_RS09320 0.85 -0.6
1,967,146 - DZA65_RS09320 0.85 -0.3
1,967,146 - DZA65_RS09320 0.85 -0.6
1,967,147 + DZA65_RS09320 0.85 +0.8
1,967,148 - DZA65_RS09320 0.85 -0.8
1,967,148 - DZA65_RS09320 0.85 +0.9
1,967,213 + +0.2
1,967,213 + +1.0
1,967,213 + +0.9
1,967,213 + -0.9
1,967,214 - +1.1
1,967,221 + +0.0
1,967,294 + -0.0
1,967,294 + +2.0
1,967,295 - +0.8
1,967,437 - DZA65_RS09325 0.16 -0.4
1,967,437 - DZA65_RS09325 0.16 +1.4
1,967,437 - DZA65_RS09325 0.16 -2.0
1,967,725 + DZA65_RS09325 0.45 +0.6
1,967,847 + DZA65_RS09325 0.57 -0.5
1,967,848 - DZA65_RS09325 0.57 +0.4
1,967,875 - DZA65_RS09325 0.60 -1.0
1,967,875 - DZA65_RS09325 0.60 -0.6
1,967,875 - DZA65_RS09325 0.60 -1.6
1,967,917 - DZA65_RS09325 0.64 -0.9
1,967,968 + DZA65_RS09325 0.69 +2.1
1,967,968 + DZA65_RS09325 0.69 -2.1
1,967,968 + DZA65_RS09325 0.69 -0.0
1,967,969 - DZA65_RS09325 0.69 -0.1
1,967,969 - DZA65_RS09325 0.69 -1.6
1,967,969 - DZA65_RS09325 0.69 -0.9
1,967,969 - DZA65_RS09325 0.69 +0.8
1,967,969 - DZA65_RS09325 0.69 +0.6
1,967,969 - DZA65_RS09325 0.69 -1.6
1,967,969 - DZA65_RS09325 0.69 -1.1
1,967,969 - DZA65_RS09325 0.69 -0.6
1,967,969 - DZA65_RS09325 0.69 -0.4
1,967,969 - DZA65_RS09325 0.69 -1.1
1,967,969 - DZA65_RS09325 0.69 -0.4
1,967,969 - DZA65_RS09325 0.69 +1.6
1,967,969 - DZA65_RS09325 0.69 -2.4
1,967,969 - DZA65_RS09325 0.69 -0.6
1,967,969 - DZA65_RS09325 0.69 -0.2
1,968,031 + DZA65_RS09325 0.76 +0.4
1,968,031 + DZA65_RS09325 0.76 +0.5
1,968,031 + DZA65_RS09325 0.76 +0.2
1,968,031 + DZA65_RS09325 0.76 -1.5
1,968,166 - DZA65_RS09325 0.89 -0.9
1,968,224 + -0.6
1,968,224 + +0.1
1,968,225 - +0.9
1,968,290 - -1.0
1,968,308 + +0.9
1,968,311 + -1.0
1,968,503 - DZA65_RS09330 0.25 +0.3
1,968,572 + DZA65_RS09330 0.32 -0.8
1,968,638 + DZA65_RS09330 0.39 +0.4
1,968,639 - DZA65_RS09330 0.39 -0.1
1,968,754 + DZA65_RS09330 0.51 +1.3
1,968,754 + DZA65_RS09330 0.51 +1.2
1,968,755 - DZA65_RS09330 0.51 +0.2
1,968,887 + DZA65_RS09330 0.64 +0.3
1,968,888 - DZA65_RS09330 0.64 -0.6
1,968,888 - DZA65_RS09330 0.64 -0.0
1,968,888 - DZA65_RS09330 0.64 +0.7
1,968,895 + DZA65_RS09330 0.65 -0.8
1,968,895 + DZA65_RS09330 0.65 -0.1
1,968,895 + DZA65_RS09330 0.65 +0.4
1,968,896 - DZA65_RS09330 0.65 +0.1
1,968,896 - DZA65_RS09330 0.65 -1.6
1,968,925 + DZA65_RS09330 0.68 +2.0
1,968,925 + DZA65_RS09330 0.68 +0.2
1,968,950 + DZA65_RS09330 0.71 +0.9
1,968,950 + DZA65_RS09330 0.71 +1.7
1,968,950 + DZA65_RS09330 0.71 -0.9
1,968,950 + DZA65_RS09330 0.71 -0.1
1,968,950 + DZA65_RS09330 0.71 +1.0
1,968,950 + DZA65_RS09330 0.71 +0.3
1,968,950 + DZA65_RS09330 0.71 -1.0
1,968,950 + DZA65_RS09330 0.71 +0.4
1,968,950 + DZA65_RS09330 0.71 +1.4
1,968,950 + DZA65_RS09330 0.71 +1.3
1,968,951 - DZA65_RS09330 0.71 -0.9
1,968,951 - DZA65_RS09330 0.71 -1.4
1,968,951 - DZA65_RS09330 0.71 -1.0
1,968,951 - DZA65_RS09330 0.71 -0.4
1,968,951 - DZA65_RS09330 0.71 -1.1
1,968,951 - DZA65_RS09330 0.71 -0.7
1,968,951 - DZA65_RS09330 0.71 +0.1
1,968,951 - DZA65_RS09330 0.71 -1.6
1,968,992 + DZA65_RS09330 0.75 +1.3
1,968,992 + DZA65_RS09330 0.75 +0.3
1,968,992 + DZA65_RS09330 0.75 +0.0
1,968,992 + DZA65_RS09330 0.75 +0.0
1,968,992 + DZA65_RS09330 0.75 +0.4
1,968,992 + -0.6
1,968,992 + DZA65_RS09330 0.75 -0.9
1,968,992 + DZA65_RS09330 0.75 -0.3
1,968,992 + DZA65_RS09330 0.75 +0.7
1,968,992 + DZA65_RS09330 0.75 -0.4
1,968,992 + DZA65_RS09330 0.75 -1.6
1,968,993 - DZA65_RS09330 0.75 +1.1
1,968,993 - DZA65_RS09330 0.75 +1.4
1,968,993 - DZA65_RS09330 0.75 -1.9
1,968,993 - DZA65_RS09330 0.75 -1.6
1,968,993 - DZA65_RS09330 0.75 -0.4
1,968,993 - DZA65_RS09330 0.75 +0.3
1,969,013 + DZA65_RS09330 0.77 -0.7
1,969,014 - DZA65_RS09330 0.77 +0.6
1,969,014 - DZA65_RS09330 0.77 -0.3
1,969,121 + DZA65_RS09330 0.88 +2.4
1,969,121 + DZA65_RS09330 0.88 -1.3
1,969,121 + DZA65_RS09330 0.88 -0.5
1,969,121 + DZA65_RS09330 0.88 -0.0
1,969,121 + DZA65_RS09330 0.88 +0.1
1,969,121 + DZA65_RS09330 0.88 -0.1
1,969,122 - DZA65_RS09330 0.88 -0.6

Or see this region's nucleotide sequence