Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02255

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02245 and DZA65_RS02250 are separated by 2 nucleotidesDZA65_RS02250 and DZA65_RS02255 are separated by 13 nucleotidesDZA65_RS02255 and DZA65_RS02260 are separated by 94 nucleotides DZA65_RS02245: DZA65_RS02245 - transketolase, at 487,761 to 488,564 _RS02245 DZA65_RS02250: DZA65_RS02250 - transketolase, at 488,567 to 489,487 _RS02250 DZA65_RS02255: DZA65_RS02255 - D-threitol dehydrogenase, at 489,501 to 490,304 _RS02255 DZA65_RS02260: DZA65_RS02260 - substrate-binding domain-containing protein, at 490,399 to 491,334 _RS02260 Position (kb) 489 490 491Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 488.577 kb on + strandat 488.578 kb on - strandat 488.578 kb on - strandat 488.578 kb on - strandat 488.578 kb on - strandat 488.578 kb on - strandat 488.627 kb on - strandat 488.627 kb on - strandat 488.843 kb on + strand, within DZA65_RS02250at 488.844 kb on - strand, within DZA65_RS02250at 488.844 kb on - strand, within DZA65_RS02250at 488.844 kb on - strand, within DZA65_RS02250at 488.845 kb on + strand, within DZA65_RS02250at 488.845 kb on + strand, within DZA65_RS02250at 488.846 kb on - strand, within DZA65_RS02250at 488.846 kb on - strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strand, within DZA65_RS02250at 489.035 kb on + strandat 489.035 kb on + strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.036 kb on - strand, within DZA65_RS02250at 489.044 kb on - strandat 489.248 kb on - strand, within DZA65_RS02250at 489.248 kb on - strand, within DZA65_RS02250at 489.263 kb on + strand, within DZA65_RS02250at 489.263 kb on + strand, within DZA65_RS02250at 489.263 kb on + strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.264 kb on - strand, within DZA65_RS02250at 489.288 kb on + strand, within DZA65_RS02250at 489.288 kb on + strand, within DZA65_RS02250at 489.288 kb on + strandat 489.288 kb on + strand, within DZA65_RS02250at 489.288 kb on + strand, within DZA65_RS02250at 489.288 kb on + strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strandat 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.289 kb on - strand, within DZA65_RS02250at 489.331 kb on + strand, within DZA65_RS02250at 489.331 kb on + strand, within DZA65_RS02250at 489.332 kb on - strand, within DZA65_RS02250at 489.332 kb on - strand, within DZA65_RS02250at 489.386 kb on - strand, within DZA65_RS02250at 489.452 kb on - strandat 489.452 kb on - strandat 489.519 kb on + strandat 489.519 kb on + strandat 489.519 kb on + strandat 489.520 kb on - strandat 489.520 kb on - strandat 489.528 kb on - strandat 489.660 kb on + strand, within DZA65_RS02255at 489.661 kb on - strand, within DZA65_RS02255at 489.792 kb on + strand, within DZA65_RS02255at 489.802 kb on + strand, within DZA65_RS02255at 489.966 kb on - strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.017 kb on + strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.018 kb on - strand, within DZA65_RS02255at 490.097 kb on + strand, within DZA65_RS02255at 490.097 kb on + strand, within DZA65_RS02255at 490.098 kb on - strand, within DZA65_RS02255at 490.098 kb on - strand, within DZA65_RS02255at 490.098 kb on - strand, within DZA65_RS02255at 490.200 kb on + strand, within DZA65_RS02255at 490.201 kb on - strand, within DZA65_RS02255at 490.312 kb on - strandat 490.383 kb on + strandat 490.422 kb on - strandat 490.513 kb on + strand, within DZA65_RS02260at 490.513 kb on + strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.514 kb on - strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.516 kb on + strand, within DZA65_RS02260at 490.517 kb on - strand, within DZA65_RS02260at 490.517 kb on - strand, within DZA65_RS02260at 490.517 kb on - strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.566 kb on + strand, within DZA65_RS02260at 490.567 kb on - strand, within DZA65_RS02260at 490.567 kb on - strand, within DZA65_RS02260at 490.643 kb on + strand, within DZA65_RS02260at 490.643 kb on + strand, within DZA65_RS02260at 490.643 kb on + strand, within DZA65_RS02260at 490.644 kb on - strand, within DZA65_RS02260at 490.644 kb on - strand, within DZA65_RS02260at 490.775 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.849 kb on + strand, within DZA65_RS02260at 490.850 kb on - strand, within DZA65_RS02260at 490.850 kb on - strand, within DZA65_RS02260at 490.850 kb on - strand, within DZA65_RS02260at 490.866 kb on + strand, within DZA65_RS02260at 490.866 kb on + strand, within DZA65_RS02260at 490.867 kb on - strand, within DZA65_RS02260at 490.927 kb on + strand, within DZA65_RS02260at 490.928 kb on - strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.227 kb on + strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260at 491.228 kb on - strand, within DZA65_RS02260

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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488,577 + -0.3
488,578 - +1.0
488,578 - -2.5
488,578 - -0.0
488,578 - -0.5
488,578 - +0.2
488,627 - +0.6
488,627 - +0.7
488,843 + DZA65_RS02250 0.30 +0.2
488,844 - DZA65_RS02250 0.30 +0.1
488,844 - DZA65_RS02250 0.30 -0.0
488,844 - DZA65_RS02250 0.30 +0.6
488,845 + DZA65_RS02250 0.30 +1.5
488,845 + DZA65_RS02250 0.30 -0.4
488,846 - DZA65_RS02250 0.30 +1.0
488,846 - DZA65_RS02250 0.30 -0.5
489,035 + DZA65_RS02250 0.51 -1.3
489,035 + DZA65_RS02250 0.51 -0.2
489,035 + DZA65_RS02250 0.51 +1.0
489,035 + DZA65_RS02250 0.51 -1.3
489,035 + DZA65_RS02250 0.51 -0.9
489,035 + DZA65_RS02250 0.51 +0.3
489,035 + DZA65_RS02250 0.51 -0.6
489,035 + DZA65_RS02250 0.51 +1.0
489,035 + -1.0
489,035 + DZA65_RS02250 0.51 -1.8
489,036 - DZA65_RS02250 0.51 +0.1
489,036 - DZA65_RS02250 0.51 -0.0
489,036 - DZA65_RS02250 0.51 +0.3
489,036 - DZA65_RS02250 0.51 -0.8
489,036 - DZA65_RS02250 0.51 -1.3
489,036 - DZA65_RS02250 0.51 -1.3
489,036 - DZA65_RS02250 0.51 -0.0
489,036 - DZA65_RS02250 0.51 +0.8
489,036 - DZA65_RS02250 0.51 -0.2
489,036 - DZA65_RS02250 0.51 +0.6
489,036 - DZA65_RS02250 0.51 +0.4
489,036 - DZA65_RS02250 0.51 -2.6
489,036 - DZA65_RS02250 0.51 -0.0
489,036 - DZA65_RS02250 0.51 -2.2
489,036 - DZA65_RS02250 0.51 +0.4
489,044 - +1.2
489,248 - DZA65_RS02250 0.74 -1.8
489,248 - DZA65_RS02250 0.74 +0.2
489,263 + DZA65_RS02250 0.76 -0.6
489,263 + DZA65_RS02250 0.76 +1.0
489,263 + DZA65_RS02250 0.76 -1.8
489,264 - DZA65_RS02250 0.76 +0.5
489,264 - DZA65_RS02250 0.76 +3.4
489,264 - DZA65_RS02250 0.76 +0.4
489,264 - DZA65_RS02250 0.76 -0.9
489,264 - DZA65_RS02250 0.76 -0.6
489,288 + DZA65_RS02250 0.78 -1.7
489,288 + DZA65_RS02250 0.78 +1.6
489,288 + -0.6
489,288 + DZA65_RS02250 0.78 -1.6
489,288 + DZA65_RS02250 0.78 +1.0
489,288 + DZA65_RS02250 0.78 -2.5
489,289 - DZA65_RS02250 0.78 +0.2
489,289 - +2.0
489,289 - DZA65_RS02250 0.78 +2.3
489,289 - DZA65_RS02250 0.78 -1.8
489,289 - DZA65_RS02250 0.78 +0.1
489,289 - DZA65_RS02250 0.78 +1.0
489,289 - DZA65_RS02250 0.78 -0.6
489,331 + DZA65_RS02250 0.83 -0.3
489,331 + DZA65_RS02250 0.83 +1.6
489,332 - DZA65_RS02250 0.83 -0.0
489,332 - DZA65_RS02250 0.83 -0.2
489,386 - DZA65_RS02250 0.89 +0.2
489,452 - -0.8
489,452 - -0.4
489,519 + -1.0
489,519 + +0.9
489,519 + -0.2
489,520 - -1.0
489,520 - -1.8
489,528 - -0.0
489,660 + DZA65_RS02255 0.20 +1.0
489,661 - DZA65_RS02255 0.20 +0.6
489,792 + DZA65_RS02255 0.36 +0.6
489,802 + DZA65_RS02255 0.37 +2.1
489,966 - DZA65_RS02255 0.58 +0.4
490,017 + DZA65_RS02255 0.64 +1.0
490,017 + DZA65_RS02255 0.64 -0.6
490,017 + DZA65_RS02255 0.64 +2.3
490,017 + DZA65_RS02255 0.64 +0.4
490,018 - DZA65_RS02255 0.64 -2.3
490,018 - DZA65_RS02255 0.64 -0.0
490,018 - DZA65_RS02255 0.64 +0.8
490,018 - DZA65_RS02255 0.64 -0.3
490,018 - DZA65_RS02255 0.64 -0.2
490,097 + DZA65_RS02255 0.74 -0.6
490,097 + DZA65_RS02255 0.74 +1.4
490,098 - DZA65_RS02255 0.74 +0.7
490,098 - DZA65_RS02255 0.74 -0.6
490,098 - DZA65_RS02255 0.74 -0.5
490,200 + DZA65_RS02255 0.87 -0.6
490,201 - DZA65_RS02255 0.87 -0.6
490,312 - +1.0
490,383 + -0.9
490,422 - -0.2
490,513 + DZA65_RS02260 0.12 -1.7
490,513 + DZA65_RS02260 0.12 -0.4
490,514 - DZA65_RS02260 0.12 +0.8
490,514 - DZA65_RS02260 0.12 +1.6
490,514 - DZA65_RS02260 0.12 +0.5
490,514 - DZA65_RS02260 0.12 -0.2
490,514 - DZA65_RS02260 0.12 -0.2
490,516 + DZA65_RS02260 0.12 -0.2
490,516 + DZA65_RS02260 0.12 +0.1
490,516 + DZA65_RS02260 0.12 -0.0
490,516 + DZA65_RS02260 0.12 -0.3
490,516 + DZA65_RS02260 0.12 +0.7
490,517 - DZA65_RS02260 0.13 -1.2
490,517 - DZA65_RS02260 0.13 -0.8
490,517 - DZA65_RS02260 0.13 +0.9
490,566 + DZA65_RS02260 0.18 +1.6
490,566 + DZA65_RS02260 0.18 +1.8
490,566 + DZA65_RS02260 0.18 +0.2
490,566 + DZA65_RS02260 0.18 -0.9
490,567 - DZA65_RS02260 0.18 +0.5
490,567 - DZA65_RS02260 0.18 +0.7
490,643 + DZA65_RS02260 0.26 -0.2
490,643 + DZA65_RS02260 0.26 -0.6
490,643 + DZA65_RS02260 0.26 -0.0
490,644 - DZA65_RS02260 0.26 +0.2
490,644 - DZA65_RS02260 0.26 +1.0
490,775 + DZA65_RS02260 0.40 -0.8
490,849 + DZA65_RS02260 0.48 -0.9
490,849 + DZA65_RS02260 0.48 -1.2
490,849 + DZA65_RS02260 0.48 -0.2
490,849 + DZA65_RS02260 0.48 +0.2
490,849 + DZA65_RS02260 0.48 -1.2
490,849 + DZA65_RS02260 0.48 +0.6
490,849 + DZA65_RS02260 0.48 -0.4
490,850 - DZA65_RS02260 0.48 -0.0
490,850 - DZA65_RS02260 0.48 +0.3
490,850 - DZA65_RS02260 0.48 +0.3
490,866 + DZA65_RS02260 0.50 +0.7
490,866 + DZA65_RS02260 0.50 +0.3
490,867 - DZA65_RS02260 0.50 -1.3
490,927 + DZA65_RS02260 0.56 +0.3
490,928 - DZA65_RS02260 0.57 -0.3
491,227 + DZA65_RS02260 0.88 +1.5
491,227 + DZA65_RS02260 0.88 +0.2
491,227 + DZA65_RS02260 0.88 +1.4
491,227 + DZA65_RS02260 0.88 -0.9
491,227 + DZA65_RS02260 0.88 -0.7
491,227 + DZA65_RS02260 0.88 +1.0
491,227 + DZA65_RS02260 0.88 -1.8
491,227 + DZA65_RS02260 0.88 +0.7
491,227 + DZA65_RS02260 0.88 +1.0
491,227 + DZA65_RS02260 0.88 -0.9
491,227 + DZA65_RS02260 0.88 +1.2
491,227 + DZA65_RS02260 0.88 +0.7
491,228 - DZA65_RS02260 0.89 -3.4
491,228 - DZA65_RS02260 0.89 -0.5
491,228 - DZA65_RS02260 0.89 -0.6
491,228 - DZA65_RS02260 0.89 +1.1
491,228 - DZA65_RS02260 0.89 +0.5
491,228 - DZA65_RS02260 0.89 -0.6

Or see this region's nucleotide sequence