Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00240 and DZA65_RS00245 are separated by 28 nucleotides DZA65_RS00245 and DZA65_RS00250 are separated by 27 nucleotides DZA65_RS00250 and DZA65_RS00255 are separated by 16 nucleotides
DZA65_RS00240: DZA65_RS00240 - urea carboxylase-associated family protein, at 58,006 to 58,725
_RS00240
DZA65_RS00245: DZA65_RS00245 - ABC transporter ATP-binding protein, at 58,754 to 59,530
_RS00245
DZA65_RS00250: DZA65_RS00250 - ABC transporter permease subunit, at 59,558 to 60,370
_RS00250
DZA65_RS00255: DZA65_RS00255 - ABC transporter substrate-binding protein, at 60,387 to 61,442
_RS00255
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1
2 at 58.577 kb on + strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.578 kb on - strand, within DZA65_RS00240 at 58.602 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.712 kb on + strand at 58.712 kb on + strand at 58.712 kb on + strand at 58.712 kb on + strand at 58.713 kb on - strand at 58.713 kb on - strand at 58.713 kb on - strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.833 kb on + strand, within DZA65_RS00245 at 58.833 kb on + strand, within DZA65_RS00245 at 58.833 kb on + strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.973 kb on + strand, within DZA65_RS00245 at 59.121 kb on + strand, within DZA65_RS00245 at 59.121 kb on + strand, within DZA65_RS00245 at 59.121 kb on + strand, within DZA65_RS00245 at 59.122 kb on - strand, within DZA65_RS00245 at 59.122 kb on - strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.126 kb on - strand, within DZA65_RS00245 at 59.126 kb on - strand, within DZA65_RS00245 at 59.286 kb on + strand, within DZA65_RS00245 at 59.493 kb on + strand at 59.494 kb on - strand at 59.513 kb on - strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.531 kb on - strand at 59.531 kb on - strand at 59.571 kb on + strand at 59.571 kb on + strand at 59.571 kb on + strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.676 kb on + strand, within DZA65_RS00250 at 59.812 kb on + strand, within DZA65_RS00250 at 59.812 kb on + strand, within DZA65_RS00250 at 59.813 kb on - strand, within DZA65_RS00250 at 59.813 kb on - strand, within DZA65_RS00250 at 59.813 kb on - strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.954 kb on + strand, within DZA65_RS00250 at 59.954 kb on + strand, within DZA65_RS00250 at 59.955 kb on - strand, within DZA65_RS00250 at 60.105 kb on - strand, within DZA65_RS00250 at 60.285 kb on + strand, within DZA65_RS00250 at 60.286 kb on - strand, within DZA65_RS00250 at 60.286 kb on - strand, within DZA65_RS00250 at 60.305 kb on + strand at 60.351 kb on + strand at 60.351 kb on + strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.389 kb on - strand at 60.389 kb on - strand at 60.389 kb on - strand at 60.684 kb on - strand, within DZA65_RS00255 at 60.736 kb on + strand, within DZA65_RS00255 at 60.736 kb on + strand, within DZA65_RS00255 at 60.737 kb on - strand, within DZA65_RS00255 at 60.737 kb on - strand, within DZA65_RS00255 at 61.015 kb on + strand, within DZA65_RS00255 at 61.015 kb on + strand, within DZA65_RS00255 at 61.015 kb on + strand, within DZA65_RS00255 at 61.016 kb on - strand, within DZA65_RS00255 at 61.076 kb on + strand, within DZA65_RS00255 at 61.077 kb on - strand, within DZA65_RS00255 at 61.143 kb on + strand, within DZA65_RS00255 at 61.214 kb on + strand, within DZA65_RS00255 at 61.214 kb on + strand, within DZA65_RS00255 at 61.214 kb on + strand, within DZA65_RS00255 at 61.215 kb on - strand, within DZA65_RS00255 at 61.215 kb on - strand, within DZA65_RS00255 at 61.216 kb on + strand, within DZA65_RS00255 at 61.216 kb on + strand, within DZA65_RS00255 at 61.216 kb on + strand, within DZA65_RS00255 at 61.217 kb on - strand, within DZA65_RS00255 at 61.217 kb on - strand, within DZA65_RS00255 at 61.217 kb on - strand, within DZA65_RS00255 at 61.237 kb on + strand, within DZA65_RS00255 at 61.237 kb on + strand, within DZA65_RS00255 at 61.237 kb on + strand, within DZA65_RS00255 at 61.237 kb on + strand, within DZA65_RS00255 at 61.238 kb on - strand, within DZA65_RS00255 at 61.238 kb on - strand, within DZA65_RS00255 at 61.238 kb on - strand, within DZA65_RS00255 at 61.269 kb on - strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.273 kb on + strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.274 kb on - strand, within DZA65_RS00255 at 61.339 kb on + strand at 61.340 kb on - strand at 61.340 kb on - strand at 61.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 58,577 + DZA65_RS00240 0.79 -1.4 58,577 + DZA65_RS00240 0.79 +1.9 58,577 + DZA65_RS00240 0.79 -0.3 58,578 - DZA65_RS00240 0.79 -0.5 58,602 + DZA65_RS00240 0.83 +0.3 58,604 + DZA65_RS00240 0.83 +0.1 58,604 + DZA65_RS00240 0.83 -0.9 58,604 + DZA65_RS00240 0.83 -0.5 58,604 + DZA65_RS00240 0.83 -1.3 58,604 + DZA65_RS00240 0.83 -0.5 58,604 + DZA65_RS00240 0.83 +0.1 58,604 + DZA65_RS00240 0.83 -0.5 58,604 + DZA65_RS00240 0.83 -0.3 58,605 - DZA65_RS00240 0.83 -1.3 58,605 - DZA65_RS00240 0.83 +1.7 58,605 - DZA65_RS00240 0.83 +1.1 58,605 - DZA65_RS00240 0.83 -0.3 58,605 - DZA65_RS00240 0.83 +0.8 58,605 - DZA65_RS00240 0.83 +1.7 58,605 - DZA65_RS00240 0.83 +0.2 58,712 + -0.4 58,712 + +1.7 58,712 + -1.1 58,712 + +0.3 58,713 - +0.6 58,713 - +0.6 58,713 - -1.5 58,737 + -0.2 58,737 + +1.1 58,737 + +1.0 58,737 + +0.5 58,737 + -0.2 58,737 + +0.7 58,737 + -1.3 58,738 - -0.4 58,738 - -1.1 58,738 - -0.3 58,738 - +1.1 58,738 - -1.3 58,738 - +1.1 58,738 - -0.5 58,738 - +2.6 58,738 - -1.3 58,738 - +1.1 58,738 - -0.9 58,738 - +0.2 58,738 - -0.3 58,833 + DZA65_RS00245 0.10 -0.2 58,833 + DZA65_RS00245 0.10 -1.6 58,833 + DZA65_RS00245 0.10 +0.7 58,834 - DZA65_RS00245 0.10 -0.5 58,834 - DZA65_RS00245 0.10 +0.7 58,834 - DZA65_RS00245 0.10 -0.2 58,834 - DZA65_RS00245 0.10 +0.6 58,834 - DZA65_RS00245 0.10 +0.4 58,973 + DZA65_RS00245 0.28 -1.5 59,121 + DZA65_RS00245 0.47 -0.4 59,121 + DZA65_RS00245 0.47 -1.3 59,121 + DZA65_RS00245 0.47 -1.3 59,122 - DZA65_RS00245 0.47 -0.8 59,122 - DZA65_RS00245 0.47 -0.2 59,125 + DZA65_RS00245 0.48 +1.1 59,125 + DZA65_RS00245 0.48 +0.7 59,125 + DZA65_RS00245 0.48 +0.1 59,125 + DZA65_RS00245 0.48 -0.7 59,126 - DZA65_RS00245 0.48 +0.7 59,126 - DZA65_RS00245 0.48 +0.5 59,286 + DZA65_RS00245 0.68 +0.1 59,493 + -1.3 59,494 - -0.3 59,513 - -2.3 59,530 + +0.7 59,530 + -1.7 59,530 + -1.1 59,531 - +0.5 59,531 - -0.7 59,571 + +1.0 59,571 + +0.2 59,571 + +1.4 59,572 - +0.2 59,572 - +0.2 59,572 - -0.1 59,572 - -0.7 59,572 - -0.3 59,649 + DZA65_RS00250 0.11 -0.8 59,649 + DZA65_RS00250 0.11 +0.4 59,649 + DZA65_RS00250 0.11 +0.4 59,649 + DZA65_RS00250 0.11 +0.3 59,649 + DZA65_RS00250 0.11 -0.5 59,649 + DZA65_RS00250 0.11 +0.7 59,649 + DZA65_RS00250 0.11 -0.5 59,650 - DZA65_RS00250 0.11 +0.5 59,650 - DZA65_RS00250 0.11 +0.8 59,650 - DZA65_RS00250 0.11 -0.9 59,650 - DZA65_RS00250 0.11 -1.6 59,676 + DZA65_RS00250 0.15 -1.2 59,812 + DZA65_RS00250 0.31 -0.9 59,812 + DZA65_RS00250 0.31 +2.1 59,813 - DZA65_RS00250 0.31 +1.1 59,813 - DZA65_RS00250 0.31 +0.3 59,813 - DZA65_RS00250 0.31 +1.4 59,892 + DZA65_RS00250 0.41 +0.7 59,892 + DZA65_RS00250 0.41 +0.2 59,892 + DZA65_RS00250 0.41 -0.5 59,892 + DZA65_RS00250 0.41 +0.9 59,892 + DZA65_RS00250 0.41 +0.5 59,892 + DZA65_RS00250 0.41 -0.8 59,892 + DZA65_RS00250 0.41 +0.3 59,893 - DZA65_RS00250 0.41 -0.4 59,893 - DZA65_RS00250 0.41 +0.5 59,893 - DZA65_RS00250 0.41 -1.6 59,893 - DZA65_RS00250 0.41 -0.1 59,893 - DZA65_RS00250 0.41 +1.8 59,893 - DZA65_RS00250 0.41 +1.2 59,893 - DZA65_RS00250 0.41 -0.0 59,893 - DZA65_RS00250 0.41 +0.5 59,893 - DZA65_RS00250 0.41 -1.2 59,893 - DZA65_RS00250 0.41 +0.2 59,893 - DZA65_RS00250 0.41 -2.7 59,893 - DZA65_RS00250 0.41 -0.3 59,893 - DZA65_RS00250 0.41 -1.7 59,893 - DZA65_RS00250 0.41 +1.1 59,893 - DZA65_RS00250 0.41 +0.4 59,893 - DZA65_RS00250 0.41 +0.7 59,954 + DZA65_RS00250 0.49 +0.3 59,954 + DZA65_RS00250 0.49 -0.9 59,955 - DZA65_RS00250 0.49 -2.1 60,105 - DZA65_RS00250 0.67 +1.1 60,285 + DZA65_RS00250 0.89 +0.7 60,286 - DZA65_RS00250 0.90 -0.6 60,286 - DZA65_RS00250 0.90 +0.5 60,305 + -1.8 60,351 + +0.1 60,351 + -0.5 60,352 - -0.5 60,352 - +1.1 60,352 - -0.9 60,388 + -0.7 60,388 + +0.8 60,388 + -0.2 60,388 + +0.4 60,388 + -0.4 60,388 + -0.9 60,388 + -0.3 60,389 - +0.1 60,389 - -0.1 60,389 - +0.7 60,684 - DZA65_RS00255 0.28 +1.7 60,736 + DZA65_RS00255 0.33 +0.3 60,736 + DZA65_RS00255 0.33 +1.0 60,737 - DZA65_RS00255 0.33 +0.1 60,737 - DZA65_RS00255 0.33 -1.4 61,015 + DZA65_RS00255 0.59 -0.2 61,015 + DZA65_RS00255 0.59 -2.4 61,015 + DZA65_RS00255 0.59 -1.0 61,016 - DZA65_RS00255 0.60 -1.5 61,076 + DZA65_RS00255 0.65 -0.4 61,077 - DZA65_RS00255 0.65 +0.1 61,143 + DZA65_RS00255 0.72 -1.2 61,214 + DZA65_RS00255 0.78 +0.6 61,214 + DZA65_RS00255 0.78 -0.3 61,214 + DZA65_RS00255 0.78 +0.6 61,215 - DZA65_RS00255 0.78 +2.4 61,215 - DZA65_RS00255 0.78 +0.4 61,216 + DZA65_RS00255 0.79 +1.1 61,216 + DZA65_RS00255 0.79 -0.9 61,216 + DZA65_RS00255 0.79 +2.7 61,217 - DZA65_RS00255 0.79 -0.2 61,217 - DZA65_RS00255 0.79 +1.7 61,217 - DZA65_RS00255 0.79 +1.1 61,237 + DZA65_RS00255 0.80 -0.4 61,237 + DZA65_RS00255 0.80 -1.7 61,237 + DZA65_RS00255 0.80 -0.4 61,237 + DZA65_RS00255 0.80 -0.1 61,238 - DZA65_RS00255 0.81 +0.3 61,238 - DZA65_RS00255 0.81 +0.5 61,238 - DZA65_RS00255 0.81 +0.9 61,269 - DZA65_RS00255 0.84 -0.8 61,273 + DZA65_RS00255 0.84 -0.1 61,273 + DZA65_RS00255 0.84 -1.2 61,273 + DZA65_RS00255 0.84 -0.9 61,273 + DZA65_RS00255 0.84 +2.3 61,273 + DZA65_RS00255 0.84 +0.5 61,274 - DZA65_RS00255 0.84 +0.6 61,274 - DZA65_RS00255 0.84 -0.7 61,274 - DZA65_RS00255 0.84 -0.6 61,274 - DZA65_RS00255 0.84 -0.8 61,274 - DZA65_RS00255 0.84 -0.5 61,274 - DZA65_RS00255 0.84 +0.7 61,339 + -0.3 61,340 - +0.5 61,340 - +0.3 61,340 - +1.1
Or see this region's nucleotide sequence