Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS22475 and DZA65_RS22480 overlap by 4 nucleotides DZA65_RS22480 and DZA65_RS22485 are separated by 26 nucleotides DZA65_RS22485 and DZA65_RS22490 overlap by 29 nucleotides
DZA65_RS22475: DZA65_RS22475 - glycosyltransferase family 2 protein, at 4,859,622 to 4,861,331
_RS22475
DZA65_RS22480: DZA65_RS22480 - acyl-CoA thioesterase, at 4,861,328 to 4,861,756
_RS22480
DZA65_RS22485: DZA65_RS22485 - outer membrane lipoprotein carrier protein LolA, at 4,861,783 to 4,862,391
_RS22485
DZA65_RS22490: DZA65_RS22490 - hypothetical protein, at 4,862,363 to 4,864,681
_RS22490
Position (kb) 4861
4862
4863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4860.825 kb on - strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4860.925 kb on + strand, within DZA65_RS22475 at 4861.136 kb on - strand, within DZA65_RS22475 at 4861.143 kb on + strand, within DZA65_RS22475 at 4861.144 kb on - strand, within DZA65_RS22475 at 4861.221 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.325 kb on + strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.326 kb on - strand at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.424 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.469 kb on + strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.470 kb on - strand, within DZA65_RS22480 at 4861.505 kb on + strand, within DZA65_RS22480 at 4861.506 kb on - strand, within DZA65_RS22480 at 4861.506 kb on - strand, within DZA65_RS22480 at 4861.526 kb on - strand, within DZA65_RS22480 at 4861.538 kb on + strand, within DZA65_RS22480 at 4861.556 kb on + strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.557 kb on - strand, within DZA65_RS22480 at 4861.664 kb on + strand, within DZA65_RS22480 at 4861.664 kb on + strand, within DZA65_RS22480 at 4861.664 kb on + strand, within DZA65_RS22480 at 4861.665 kb on - strand, within DZA65_RS22480 at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.787 kb on + strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.788 kb on - strand at 4861.795 kb on - strand at 4861.843 kb on - strand at 4861.917 kb on + strand, within DZA65_RS22485 at 4861.918 kb on - strand, within DZA65_RS22485 at 4861.918 kb on - strand, within DZA65_RS22485 at 4862.034 kb on + strand, within DZA65_RS22485 at 4862.034 kb on + strand, within DZA65_RS22485 at 4862.034 kb on + strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.035 kb on - strand, within DZA65_RS22485 at 4862.069 kb on + strand at 4862.069 kb on + strand, within DZA65_RS22485 at 4862.069 kb on + strand, within DZA65_RS22485 at 4862.069 kb on + strand, within DZA65_RS22485 at 4862.208 kb on - strand, within DZA65_RS22485 at 4862.310 kb on + strand, within DZA65_RS22485 at 4862.340 kb on + strand at 4862.340 kb on + strand at 4862.340 kb on + strand at 4862.340 kb on + strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.341 kb on - strand at 4862.343 kb on + strand at 4862.343 kb on + strand at 4862.343 kb on + strand at 4862.344 kb on - strand at 4862.344 kb on - strand at 4862.344 kb on - strand at 4862.457 kb on + strand at 4862.457 kb on + strand at 4862.551 kb on + strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.552 kb on - strand at 4862.811 kb on - strand, within DZA65_RS22490 at 4862.811 kb on - strand, within DZA65_RS22490 at 4862.956 kb on + strand, within DZA65_RS22490 at 4862.957 kb on - strand, within DZA65_RS22490 at 4862.957 kb on - strand, within DZA65_RS22490 at 4862.957 kb on - strand, within DZA65_RS22490 at 4862.963 kb on + strand, within DZA65_RS22490 at 4862.963 kb on + strand, within DZA65_RS22490 at 4862.964 kb on - strand, within DZA65_RS22490 at 4862.964 kb on - strand, within DZA65_RS22490 at 4863.004 kb on + strand, within DZA65_RS22490 at 4863.004 kb on + strand, within DZA65_RS22490 at 4863.005 kb on - strand, within DZA65_RS22490 at 4863.097 kb on + strand, within DZA65_RS22490 at 4863.097 kb on + strand, within DZA65_RS22490 at 4863.097 kb on + strand, within DZA65_RS22490 at 4863.097 kb on + strand, within DZA65_RS22490 at 4863.098 kb on - strand, within DZA65_RS22490 at 4863.098 kb on - strand, within DZA65_RS22490 at 4863.109 kb on + strand, within DZA65_RS22490 at 4863.116 kb on + strand, within DZA65_RS22490 at 4863.198 kb on + strand, within DZA65_RS22490 at 4863.198 kb on + strand, within DZA65_RS22490 at 4863.199 kb on - strand, within DZA65_RS22490 at 4863.225 kb on + strand, within DZA65_RS22490 at 4863.225 kb on + strand, within DZA65_RS22490 at 4863.226 kb on - strand, within DZA65_RS22490 at 4863.226 kb on - strand, within DZA65_RS22490 at 4863.294 kb on + strand, within DZA65_RS22490 at 4863.294 kb on + strand, within DZA65_RS22490 at 4863.294 kb on + strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.295 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.326 kb on - strand, within DZA65_RS22490 at 4863.347 kb on + strand, within DZA65_RS22490 at 4863.347 kb on + strand, within DZA65_RS22490 at 4863.347 kb on + strand, within DZA65_RS22490 at 4863.347 kb on + strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.348 kb on - strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.356 kb on + strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.357 kb on - strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.359 kb on + strand, within DZA65_RS22490 at 4863.360 kb on - strand, within DZA65_RS22490 at 4863.360 kb on - strand, within DZA65_RS22490 at 4863.360 kb on - strand, within DZA65_RS22490 at 4863.360 kb on - strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.378 kb on + strand, within DZA65_RS22490 at 4863.379 kb on - strand, within DZA65_RS22490
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,860,825 - DZA65_RS22475 0.70 +0.3 4,860,925 + DZA65_RS22475 0.76 -0.5 4,860,925 + DZA65_RS22475 0.76 -1.7 4,860,925 + DZA65_RS22475 0.76 -1.0 4,860,925 + DZA65_RS22475 0.76 -1.5 4,860,925 + DZA65_RS22475 0.76 +0.3 4,861,136 - DZA65_RS22475 0.89 -1.1 4,861,143 + DZA65_RS22475 0.89 -0.8 4,861,144 - DZA65_RS22475 0.89 +1.3 4,861,221 + -0.5 4,861,325 + -0.2 4,861,325 + +0.4 4,861,325 + -1.1 4,861,325 + -1.1 4,861,325 + -0.5 4,861,325 + -0.1 4,861,325 + +0.6 4,861,325 + +0.0 4,861,326 - +0.2 4,861,326 - +0.2 4,861,326 - +1.0 4,861,326 - -1.8 4,861,326 - -1.0 4,861,424 + DZA65_RS22480 0.22 -0.4 4,861,424 + DZA65_RS22480 0.22 +1.2 4,861,424 + DZA65_RS22480 0.22 +1.6 4,861,424 + DZA65_RS22480 0.22 +1.0 4,861,469 + DZA65_RS22480 0.33 -1.0 4,861,469 + DZA65_RS22480 0.33 +1.4 4,861,469 + DZA65_RS22480 0.33 -0.7 4,861,469 + DZA65_RS22480 0.33 +1.0 4,861,469 + DZA65_RS22480 0.33 -0.8 4,861,469 + DZA65_RS22480 0.33 +1.0 4,861,470 - DZA65_RS22480 0.33 +0.0 4,861,470 - DZA65_RS22480 0.33 -2.8 4,861,470 - DZA65_RS22480 0.33 +1.0 4,861,470 - DZA65_RS22480 0.33 +0.8 4,861,470 - DZA65_RS22480 0.33 -2.4 4,861,470 - DZA65_RS22480 0.33 -0.3 4,861,505 + DZA65_RS22480 0.41 +0.0 4,861,506 - DZA65_RS22480 0.41 -2.0 4,861,506 - DZA65_RS22480 0.41 +0.0 4,861,526 - DZA65_RS22480 0.46 -2.8 4,861,538 + DZA65_RS22480 0.49 -2.0 4,861,556 + DZA65_RS22480 0.53 -0.2 4,861,557 - DZA65_RS22480 0.53 +0.0 4,861,557 - DZA65_RS22480 0.53 -0.6 4,861,557 - DZA65_RS22480 0.53 -1.1 4,861,557 - DZA65_RS22480 0.53 -1.1 4,861,557 - DZA65_RS22480 0.53 +0.0 4,861,557 - DZA65_RS22480 0.53 +0.5 4,861,664 + DZA65_RS22480 0.78 +1.0 4,861,664 + DZA65_RS22480 0.78 +1.3 4,861,664 + DZA65_RS22480 0.78 +1.0 4,861,665 - DZA65_RS22480 0.79 +0.6 4,861,787 + +1.2 4,861,787 + -0.4 4,861,787 + +0.1 4,861,787 + -0.4 4,861,787 + -1.4 4,861,787 + -1.1 4,861,788 - -1.3 4,861,788 - +0.7 4,861,788 - +0.0 4,861,788 - -1.0 4,861,788 - +1.2 4,861,788 - +0.9 4,861,788 - +0.6 4,861,795 - +0.8 4,861,843 - +0.5 4,861,917 + DZA65_RS22485 0.22 +1.5 4,861,918 - DZA65_RS22485 0.22 +0.3 4,861,918 - DZA65_RS22485 0.22 +1.3 4,862,034 + DZA65_RS22485 0.41 +0.3 4,862,034 + DZA65_RS22485 0.41 -2.3 4,862,034 + DZA65_RS22485 0.41 +0.6 4,862,035 - DZA65_RS22485 0.41 +0.9 4,862,035 - DZA65_RS22485 0.41 -0.5 4,862,035 - DZA65_RS22485 0.41 +1.6 4,862,035 - DZA65_RS22485 0.41 +1.6 4,862,069 + -1.0 4,862,069 + DZA65_RS22485 0.47 -0.3 4,862,069 + DZA65_RS22485 0.47 +1.6 4,862,069 + DZA65_RS22485 0.47 -1.3 4,862,208 - DZA65_RS22485 0.70 -0.1 4,862,310 + DZA65_RS22485 0.87 +1.0 4,862,340 + -0.3 4,862,340 + -0.5 4,862,340 + +0.0 4,862,340 + -1.5 4,862,341 - -1.3 4,862,341 - -0.5 4,862,341 - -0.3 4,862,341 - +0.5 4,862,341 - -0.2 4,862,343 + +0.7 4,862,343 + -0.5 4,862,343 + -0.3 4,862,344 - -1.2 4,862,344 - -0.8 4,862,344 - -1.3 4,862,457 + +0.3 4,862,457 + -0.7 4,862,551 + -0.8 4,862,552 - +1.5 4,862,552 - -0.6 4,862,552 - +1.1 4,862,552 - -0.2 4,862,552 - -1.4 4,862,552 - +1.3 4,862,811 - DZA65_RS22490 0.19 +0.3 4,862,811 - DZA65_RS22490 0.19 -0.1 4,862,956 + DZA65_RS22490 0.26 -1.6 4,862,957 - DZA65_RS22490 0.26 -1.3 4,862,957 - DZA65_RS22490 0.26 +0.6 4,862,957 - DZA65_RS22490 0.26 +0.8 4,862,963 + DZA65_RS22490 0.26 -0.7 4,862,963 + DZA65_RS22490 0.26 -0.3 4,862,964 - DZA65_RS22490 0.26 +0.3 4,862,964 - DZA65_RS22490 0.26 -1.3 4,863,004 + DZA65_RS22490 0.28 +0.6 4,863,004 + DZA65_RS22490 0.28 +0.3 4,863,005 - DZA65_RS22490 0.28 -0.1 4,863,097 + DZA65_RS22490 0.32 +0.8 4,863,097 + DZA65_RS22490 0.32 -2.0 4,863,097 + DZA65_RS22490 0.32 -0.5 4,863,097 + DZA65_RS22490 0.32 +0.9 4,863,098 - DZA65_RS22490 0.32 +1.6 4,863,098 - DZA65_RS22490 0.32 -0.2 4,863,109 + DZA65_RS22490 0.32 -0.3 4,863,116 + DZA65_RS22490 0.32 -0.4 4,863,198 + DZA65_RS22490 0.36 -1.0 4,863,198 + DZA65_RS22490 0.36 -1.0 4,863,199 - DZA65_RS22490 0.36 -0.6 4,863,225 + DZA65_RS22490 0.37 -0.7 4,863,225 + DZA65_RS22490 0.37 +1.0 4,863,226 - DZA65_RS22490 0.37 +0.0 4,863,226 - DZA65_RS22490 0.37 +0.0 4,863,294 + DZA65_RS22490 0.40 -2.2 4,863,294 + DZA65_RS22490 0.40 -1.0 4,863,294 + DZA65_RS22490 0.40 -0.9 4,863,295 - DZA65_RS22490 0.40 +1.5 4,863,295 - DZA65_RS22490 0.40 -1.4 4,863,295 - DZA65_RS22490 0.40 +1.0 4,863,295 - DZA65_RS22490 0.40 +1.9 4,863,295 - DZA65_RS22490 0.40 +0.1 4,863,326 - DZA65_RS22490 0.42 -2.2 4,863,326 - DZA65_RS22490 0.42 -0.2 4,863,326 - DZA65_RS22490 0.42 +0.5 4,863,326 - DZA65_RS22490 0.42 +0.7 4,863,326 - DZA65_RS22490 0.42 -0.4 4,863,326 - DZA65_RS22490 0.42 -0.4 4,863,326 - DZA65_RS22490 0.42 +0.7 4,863,347 + DZA65_RS22490 0.42 +0.8 4,863,347 + DZA65_RS22490 0.42 -1.8 4,863,347 + DZA65_RS22490 0.42 -0.4 4,863,347 + DZA65_RS22490 0.42 -0.5 4,863,348 - DZA65_RS22490 0.42 -2.0 4,863,348 - DZA65_RS22490 0.42 -1.2 4,863,348 - DZA65_RS22490 0.42 +1.3 4,863,348 - DZA65_RS22490 0.42 -1.3 4,863,348 - DZA65_RS22490 0.42 -1.7 4,863,356 + DZA65_RS22490 0.43 -2.0 4,863,356 + DZA65_RS22490 0.43 -1.1 4,863,356 + DZA65_RS22490 0.43 -0.8 4,863,356 + DZA65_RS22490 0.43 -0.5 4,863,356 + DZA65_RS22490 0.43 +1.1 4,863,356 + DZA65_RS22490 0.43 +0.0 4,863,356 + DZA65_RS22490 0.43 +0.1 4,863,357 - DZA65_RS22490 0.43 +0.4 4,863,357 - DZA65_RS22490 0.43 +1.8 4,863,357 - DZA65_RS22490 0.43 -0.3 4,863,357 - DZA65_RS22490 0.43 -0.5 4,863,357 - DZA65_RS22490 0.43 +0.0 4,863,357 - DZA65_RS22490 0.43 +0.3 4,863,357 - DZA65_RS22490 0.43 +0.0 4,863,359 + DZA65_RS22490 0.43 +0.7 4,863,359 + DZA65_RS22490 0.43 -1.5 4,863,359 + DZA65_RS22490 0.43 -0.3 4,863,359 + DZA65_RS22490 0.43 -2.0 4,863,359 + DZA65_RS22490 0.43 -0.8 4,863,360 - DZA65_RS22490 0.43 -1.0 4,863,360 - DZA65_RS22490 0.43 +0.1 4,863,360 - DZA65_RS22490 0.43 -0.1 4,863,360 - DZA65_RS22490 0.43 -0.1 4,863,378 + DZA65_RS22490 0.44 +0.0 4,863,378 + DZA65_RS22490 0.44 -1.4 4,863,378 + DZA65_RS22490 0.44 -0.4 4,863,378 + DZA65_RS22490 0.44 -1.7 4,863,378 + DZA65_RS22490 0.44 +2.2 4,863,378 + DZA65_RS22490 0.44 -0.4 4,863,378 + DZA65_RS22490 0.44 +0.6 4,863,379 - DZA65_RS22490 0.44 -1.8
Or see this region's nucleotide sequence