Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21915

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,737,042	+				-1.0
4,737,042	+				-0.8
4,737,042	+				-0.2
4,737,043	-				+0.1
4,737,051	+				+0.2
4,737,065	+				+0.0
4,737,065	+				-1.0
4,737,065	+				+0.1
4,737,065	+				+1.0
4,737,066	-				-1.3
4,737,066	-				-1.0
4,737,066	-				-0.9
4,737,066	-				-0.5
4,737,066	-				-0.6
4,737,066	-				+1.0
4,737,071	+				+0.0
4,737,071	+				+0.3
4,737,071	+				-0.3
4,737,072	-				-0.2
4,737,072	-				+0.5
4,737,089	+				+0.5
4,737,089	+				-0.3
4,737,142	-				+0.7
4,737,142	-				+1.6
4,737,142	-				-1.3
4,737,142	-				-0.5
4,737,352	-		DZA65_RS21910	0.29	-1.3
4,737,352	-		DZA65_RS21910	0.29	+0.5
4,737,352	-		DZA65_RS21910	0.29	-0.9
4,737,355	+		DZA65_RS21910	0.30	-1.8
4,737,355	+		DZA65_RS21910	0.30	-2.0
4,737,356	-		DZA65_RS21910	0.30	+1.6
4,737,356	-		DZA65_RS21910	0.30	+0.2
4,737,356	-		DZA65_RS21910	0.30	-2.5
4,737,356	-		DZA65_RS21910	0.30	-0.8
4,737,416	+		DZA65_RS21910	0.36	-2.4
4,737,416	+		DZA65_RS21910	0.36	-1.0
4,737,417	-		DZA65_RS21910	0.36	+0.6
4,737,417	-		DZA65_RS21910	0.36	-1.0
4,737,417	-		DZA65_RS21910	0.36	+1.0
4,737,464	+		DZA65_RS21910	0.42	+1.4
4,737,464	+				-1.0
4,737,464	+		DZA65_RS21910	0.42	+1.3
4,737,464	+		DZA65_RS21910	0.42	+2.4
4,737,464	+		DZA65_RS21910	0.42	-1.3
4,737,464	+		DZA65_RS21910	0.42	-1.4
4,737,465	-		DZA65_RS21910	0.42	+0.0
4,737,465	-		DZA65_RS21910	0.42	-0.8
4,737,465	-		DZA65_RS21910	0.42	-0.8
4,737,465	-		DZA65_RS21910	0.42	-0.1
4,737,465	-		DZA65_RS21910	0.42	-0.5
4,737,465	-		DZA65_RS21910	0.42	-1.0
4,737,618	-		DZA65_RS21910	0.59	-1.0
4,737,704	+		DZA65_RS21910	0.68	+0.6
4,737,704	+		DZA65_RS21910	0.68	+0.8
4,737,705	-		DZA65_RS21910	0.68	+0.5
4,737,705	-		DZA65_RS21910	0.68	-0.4
4,737,705	-		DZA65_RS21910	0.68	+0.4
4,737,755	+		DZA65_RS21910	0.74	+0.2
4,737,755	+		DZA65_RS21910	0.74	+0.0
4,737,755	+		DZA65_RS21910	0.74	-1.2
4,737,756	-		DZA65_RS21910	0.74	-1.5
4,737,756	-		DZA65_RS21910	0.74	-0.9
4,737,756	-		DZA65_RS21910	0.74	+0.0
4,737,756	-		DZA65_RS21910	0.74	+1.2
4,737,756	-		DZA65_RS21910	0.74	-0.5
4,737,756	-		DZA65_RS21910	0.74	-1.2
4,737,781	+		DZA65_RS21910	0.77	+0.7
4,737,792	+		DZA65_RS21910	0.78	+0.2
4,737,792	+		DZA65_RS21910	0.78	+0.9
4,737,792	+		DZA65_RS21910	0.78	-0.3
4,737,792	+		DZA65_RS21910	0.78	-0.2
4,737,793	-		DZA65_RS21910	0.78	+0.8
4,737,793	-		DZA65_RS21910	0.78	-0.4
4,737,793	-		DZA65_RS21910	0.78	-1.4
4,737,876	+		DZA65_RS21910	0.87	-1.0
4,737,877	-		DZA65_RS21910	0.87	-0.5
4,737,878	+		DZA65_RS21910	0.87	-1.5
4,737,878	+		DZA65_RS21910	0.87	-0.9
4,737,878	+		DZA65_RS21910	0.87	-0.5
4,737,878	+		DZA65_RS21910	0.87	+0.3
4,737,878	+		DZA65_RS21910	0.87	+0.1
4,737,878	+		DZA65_RS21910	0.87	+0.7
4,737,879	-		DZA65_RS21910	0.88	+0.0
4,737,879	-		DZA65_RS21910	0.88	+1.6
4,737,879	-		DZA65_RS21910	0.88	+0.0
4,737,879	-		DZA65_RS21910	0.88	+2.2
4,737,879	-		DZA65_RS21910	0.88	+0.9
4,737,879	-		DZA65_RS21910	0.88	+1.5
4,737,879	-		DZA65_RS21910	0.88	+0.2
4,737,879	-		DZA65_RS21910	0.88	-1.8
4,737,879	-		DZA65_RS21910	0.88	-0.5
4,737,879	-		DZA65_RS21910	0.88	+0.2
4,737,879	-		DZA65_RS21910	0.88	-1.4
4,737,903	+				-1.5
4,737,903	+				-0.5
4,737,903	+				+0.7
4,737,903	+				-0.6
4,737,904	-				-0.2
4,737,904	-				-0.2
4,737,906	+				-1.2
4,737,906	+				-0.4
4,737,906	+				-0.8
4,737,906	+				-0.5
4,737,906	+				+0.0
4,737,906	+				+2.0
4,737,906	+				+0.3
4,737,906	+				+0.0
4,737,906	+				-0.7
4,737,907	-				-1.7
4,737,907	-				+0.8
4,737,917	+				+1.0
4,737,917	+				-1.0
4,737,918	-				-1.3
4,738,004	+				+0.3
4,738,004	+				-2.3
4,738,005	-				-0.8
4,738,005	-				-0.3
4,738,005	-				+0.5
4,738,005	-				+0.3
4,738,040	+				+1.0
4,738,041	-				+0.5
4,738,314	+		DZA65_RS21915	0.30	-1.5
4,738,314	+		DZA65_RS21915	0.30	+0.0
4,738,314	+		DZA65_RS21915	0.30	+0.8
4,738,315	-		DZA65_RS21915	0.31	+0.0
4,738,316	+		DZA65_RS21915	0.31	-1.8
4,738,316	+		DZA65_RS21915	0.31	-0.5
4,738,316	+		DZA65_RS21915	0.31	-1.0
4,738,316	+		DZA65_RS21915	0.31	+0.1
4,738,316	+		DZA65_RS21915	0.31	-0.8
4,738,316	+				+0.0
4,738,316	+		DZA65_RS21915	0.31	-2.0
4,738,316	+		DZA65_RS21915	0.31	+1.0
4,738,316	+		DZA65_RS21915	0.31	-0.2
4,738,317	-		DZA65_RS21915	0.31	+1.4
4,738,317	-		DZA65_RS21915	0.31	+0.5
4,738,317	-		DZA65_RS21915	0.31	+0.4
4,738,317	-		DZA65_RS21915	0.31	+0.2
4,738,317	-		DZA65_RS21915	0.31	-0.7
4,738,317	-		DZA65_RS21915	0.31	-0.3
4,738,317	-		DZA65_RS21915	0.31	-0.0
4,738,317	-		DZA65_RS21915	0.31	+1.5
4,738,317	-		DZA65_RS21915	0.31	-2.1
4,738,356	+		DZA65_RS21915	0.35	-1.3
4,738,356	+		DZA65_RS21915	0.35	-0.5
4,738,356	+		DZA65_RS21915	0.35	-0.2
4,738,356	+		DZA65_RS21915	0.35	+0.3
4,738,356	+		DZA65_RS21915	0.35	-0.4
4,738,356	+		DZA65_RS21915	0.35	-1.5
4,738,356	+		DZA65_RS21915	0.35	-2.4
4,738,356	+		DZA65_RS21915	0.35	+0.6
4,738,357	-		DZA65_RS21915	0.35	+0.3
4,738,357	-		DZA65_RS21915	0.35	+0.0
4,738,357	-		DZA65_RS21915	0.35	+1.0
4,738,357	-		DZA65_RS21915	0.35	-0.3
4,738,357	-		DZA65_RS21915	0.35	-1.3
4,738,357	-		DZA65_RS21915	0.35	+0.3
4,738,360	+		DZA65_RS21915	0.35	+1.0
4,738,360	+		DZA65_RS21915	0.35	+0.0
4,738,360	+		DZA65_RS21915	0.35	-0.1
4,738,360	+		DZA65_RS21915	0.35	+0.0
4,738,360	+		DZA65_RS21915	0.35	+1.6
4,738,360	+		DZA65_RS21915	0.35	+2.0
4,738,360	+		DZA65_RS21915	0.35	+0.2
4,738,360	+		DZA65_RS21915	0.35	-0.2
4,738,360	+		DZA65_RS21915	0.35	-0.3
4,738,360	+		DZA65_RS21915	0.35	-1.3
4,738,360	+		DZA65_RS21915	0.35	+1.2
4,738,360	+		DZA65_RS21915	0.35	-1.5
4,738,361	-		DZA65_RS21915	0.35	+0.8
4,738,361	-		DZA65_RS21915	0.35	-1.8
4,738,361	-		DZA65_RS21915	0.35	+2.0
4,738,361	-		DZA65_RS21915	0.35	-0.4
4,738,361	-		DZA65_RS21915	0.35	+0.0
4,738,361	-		DZA65_RS21915	0.35	-1.1
4,738,361	-		DZA65_RS21915	0.35	-0.7
4,738,361	-		DZA65_RS21915	0.35	-1.2
4,738,361	-				+2.6
4,738,361	-		DZA65_RS21915	0.35	-0.5
4,738,361	-		DZA65_RS21915	0.35	-3.2
4,738,361	-		DZA65_RS21915	0.35	+0.5
4,738,361	-		DZA65_RS21915	0.35	-0.3
4,738,361	-		DZA65_RS21915	0.35	-1.0
4,738,361	-		DZA65_RS21915	0.35	+0.2
4,738,361	-		DZA65_RS21915	0.35	+2.0
4,738,361	-		DZA65_RS21915	0.35	+0.4
4,738,361	-		DZA65_RS21915	0.35	-0.5
4,738,361	-		DZA65_RS21915	0.35	+1.3
4,738,361	-		DZA65_RS21915	0.35	-1.0
4,738,361	-		DZA65_RS21915	0.35	+0.3
4,738,361	-		DZA65_RS21915	0.35	-2.0
4,738,361	-		DZA65_RS21915	0.35	+0.8
4,738,453	+		DZA65_RS21915	0.44	+1.6
4,738,453	+		DZA65_RS21915	0.44	-1.5
4,738,453	+		DZA65_RS21915	0.44	-2.0
4,738,454	-		DZA65_RS21915	0.44	-0.4
4,738,458	+		DZA65_RS21915	0.45	+0.2
4,738,458	+		DZA65_RS21915	0.45	-0.5
4,738,458	+		DZA65_RS21915	0.45	-1.0
4,738,458	+		DZA65_RS21915	0.45	-0.2
4,738,459	-		DZA65_RS21915	0.45	-1.7
4,738,470	+		DZA65_RS21915	0.46	+0.0
4,738,470	+		DZA65_RS21915	0.46	+0.5
4,738,471	-		DZA65_RS21915	0.46	-1.3
4,738,563	+		DZA65_RS21915	0.55	+0.1
4,738,563	+		DZA65_RS21915	0.55	+0.3
4,738,563	+		DZA65_RS21915	0.55	-0.4
4,738,563	+		DZA65_RS21915	0.55	-1.3
4,738,563	+		DZA65_RS21915	0.55	-0.5
4,738,564	-		DZA65_RS21915	0.55	-0.7
4,738,564	-		DZA65_RS21915	0.55	+3.4
4,738,564	-		DZA65_RS21915	0.55	-1.5
4,738,564	-		DZA65_RS21915	0.55	+1.0
4,738,564	-		DZA65_RS21915	0.55	-1.1
4,738,564	-		DZA65_RS21915	0.55	-0.4
4,738,817	+		DZA65_RS21915	0.80	-0.1
4,738,817	+		DZA65_RS21915	0.80	-0.1
4,738,817	+		DZA65_RS21915	0.80	-1.0
4,738,817	+		DZA65_RS21915	0.80	-1.3
4,738,817	+		DZA65_RS21915	0.80	-1.0
4,738,817	+		DZA65_RS21915	0.80	+1.9
4,738,817	+		DZA65_RS21915	0.80	-1.1
4,738,817	+		DZA65_RS21915	0.80	+1.6
4,738,817	+		DZA65_RS21915	0.80	-1.3
4,738,818	-		DZA65_RS21915	0.80	+1.5
4,738,818	-		DZA65_RS21915	0.80	-2.9
4,738,818	-		DZA65_RS21915	0.80	+2.0
4,738,818	-		DZA65_RS21915	0.80	-1.5
4,738,818	-		DZA65_RS21915	0.80	+0.0
4,738,818	-		DZA65_RS21915	0.80	-0.2
4,738,818	-		DZA65_RS21915	0.80	-1.5
4,738,826	+		DZA65_RS21915	0.81	+1.4
4,738,826	+		DZA65_RS21915	0.81	+0.7
4,738,826	+		DZA65_RS21915	0.81	-0.3
4,738,826	+		DZA65_RS21915	0.81	+0.4
4,738,826	+		DZA65_RS21915	0.81	-0.8
4,738,826	+		DZA65_RS21915	0.81	-0.3
4,738,826	+		DZA65_RS21915	0.81	-0.7
4,738,826	+				+2.0
4,738,826	+		DZA65_RS21915	0.81	-1.0
4,738,827	-		DZA65_RS21915	0.81	-0.8
4,738,827	-		DZA65_RS21915	0.81	+0.0
4,738,827	-		DZA65_RS21915	0.81	+1.5
4,738,960	+				-1.0
4,738,960	+				-0.4
4,738,961	-				+0.5
4,738,965	+				+0.5
4,738,965	+				+0.1
4,738,965	+				-1.3
4,739,008	+				-0.4
4,739,022	+				-0.5
4,739,022	+				+0.8
4,739,023	-				-2.1
4,739,023	-				-0.1
4,739,023	-				+1.9
4,739,038	+				+1.0
4,739,038	+				-3.0
4,739,038	+				+0.0
4,739,038	+				+0.2
4,739,039	-				+0.2
4,739,048	+				+0.5
4,739,049	-				-0.8
4,739,049	-				+0.1
4,739,049	-				+0.0
4,739,049	-				+1.0
4,739,049	-				-1.3
4,739,050	+				+0.0
4,739,050	+				-0.1
4,739,050	+				+1.9
4,739,050	+				+0.8
4,739,051	-				+0.7
4,739,051	-				-0.2
4,739,051	-				-0.9
4,739,051	-				+0.9
4,739,051	-				-2.7
4,739,056	+				-0.0
4,739,057	-				+0.9
4,739,057	-				-0.8
4,739,057	-				-0.4
4,739,156	+				-0.7
4,739,157	-				+0.1
4,739,157	-				-0.9
4,739,208	+				+1.0
4,739,209	-				+0.2
4,739,209	-				-1.3
4,739,209	-				+1.0
4,739,209	-				+1.0
4,739,219	+				-0.8
4,739,219	+				+0.8
4,739,219	+				+1.7
4,739,220	-				+0.0
4,739,220	-				-1.1
4,739,220	-				+0.6
4,739,220	-				-0.1
4,739,220	-				+0.2
4,739,220	-				+0.5
4,739,230	+				+0.0
4,739,230	+				-0.1
4,739,230	+				-1.3
4,739,230	+				-1.0
4,739,230	+				+0.3
4,739,230	+				+2.5
4,739,230	+				-0.2
4,739,231	-				-1.8
4,739,231	-				+1.5
4,739,235	+				+0.3
4,739,236	-				-1.8
4,739,236	-				+1.0
4,739,236	-				+0.9
4,739,241	+				-0.4
4,739,241	+				+1.3
4,739,241	+				+0.2
4,739,241	+				-0.8
4,739,242	-				-0.5
4,739,242	-				+0.0
4,739,242	-				+0.8
4,739,242	-				-0.0
4,739,242	-				-3.4
4,739,242	-				-1.8
4,739,242	-				-0.9
4,739,242	-				+0.7
4,739,255	+				+0.8
4,739,255	+				-1.1
4,739,255	+				-2.7
4,739,255	+				+1.0
4,739,255	+				-0.1
4,739,255	+				-0.3
4,739,255	+				-0.2
4,739,255	+				+0.5
4,739,256	-				-0.3
4,739,256	-				-0.5
4,739,256	-				+0.7
4,739,256	-				+0.7
4,739,256	-				-0.3
4,739,256	-				+0.9
4,739,281	+				-1.1
4,739,281	+				-0.9
4,739,282	-				+0.8
4,739,282	-				-0.9
4,739,282	-				+0.5
4,739,298	-				+1.0
4,739,311	+				-1.0
4,739,311	+				+0.3
4,739,311	+				-0.5
4,739,311	+				+0.1
4,739,312	-				+0.6
4,739,312	-				+2.0
4,739,312	-				+1.0
4,739,312	-				+0.1
4,739,312	-				-1.1
4,739,377	+				+0.0
4,739,377	+				-0.3
4,739,377	+				-0.8
4,739,377	+				-0.3
4,739,378	-				+0.0
4,739,378	-				-1.5
4,739,378	-				+0.8
4,739,378	-				-0.8
4,739,388	-				+0.0
4,739,388	-				+0.0
4,739,446	+		DZA65_RS21920	0.13	-1.1
4,739,446	+		DZA65_RS21920	0.13	-0.5
4,739,446	+		DZA65_RS21920	0.13	+1.7
4,739,446	+		DZA65_RS21920	0.13	+0.5
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