Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21795

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,710,794	-		DZA65_RS21785	0.53	+0.8
4,710,794	-		DZA65_RS21785	0.53	-1.5
4,710,794	-		DZA65_RS21785	0.53	-0.1
4,710,794	-		DZA65_RS21785	0.53	-1.0
4,710,820	-		DZA65_RS21785	0.57	-1.0
4,710,908	+		DZA65_RS21785	0.71	+1.5
4,710,908	+		DZA65_RS21785	0.71	+0.2
4,710,908	+		DZA65_RS21785	0.71	+0.0
4,710,908	+		DZA65_RS21785	0.71	-1.3
4,710,908	+		DZA65_RS21785	0.71	+1.8
4,710,908	+		DZA65_RS21785	0.71	+0.7
4,710,908	+		DZA65_RS21785	0.71	-1.0
4,710,909	-		DZA65_RS21785	0.72	-1.8
4,710,909	-		DZA65_RS21785	0.72	+0.3
4,710,909	-		DZA65_RS21785	0.72	-0.1
4,710,909	-		DZA65_RS21785	0.72	+0.8
4,710,963	+		DZA65_RS21785	0.80	+0.0
4,710,963	+		DZA65_RS21785	0.80	+0.9
4,710,963	+		DZA65_RS21785	0.80	+0.4
4,710,963	+		DZA65_RS21785	0.80	-0.0
4,710,963	+		DZA65_RS21785	0.80	+1.4
4,710,963	+		DZA65_RS21785	0.80	-0.4
4,711,043	+				-1.0
4,711,043	+				-1.3
4,711,062	+				-1.3
4,711,062	+				+1.8
4,711,063	-				+0.0
4,711,063	-				-1.3
4,711,063	-				+1.9
4,711,063	-				+1.6
4,711,063	-				-0.7
4,711,063	-				-0.7
4,711,063	-				-2.1
4,711,065	+				-0.3
4,711,065	+				+2.0
4,711,065	+				-0.3
4,711,066	-				+0.0
4,711,066	-				-1.3
4,711,079	+				-1.2
4,711,079	+				-1.5
4,711,079	+				+1.0
4,711,079	+				-0.6
4,711,079	+				-1.8
4,711,079	+				-0.2
4,711,079	+				+0.6
4,711,079	+				-0.5
4,711,079	+				-2.0
4,711,079	+				+3.2
4,711,079	+				+2.5
4,711,079	+				-0.4
4,711,079	+				+0.4
4,711,079	+				+1.0
4,711,079	+				-0.2
4,711,080	-				-0.2
4,711,080	-				-1.0
4,711,080	-				+1.0
4,711,080	-				-1.3
4,711,080	-				+1.0
4,711,081	+				-1.4
4,711,081	+				-1.3
4,711,081	+				-0.1
4,711,081	+				-0.3
4,711,081	+				-1.5
4,711,081	+				+0.0
4,711,081	+				+0.8
4,711,082	-				+0.8
4,711,082	-				-0.2
4,711,082	-				+0.7
4,711,082	-				+1.1
4,711,082	-				-2.0
4,711,082	-				+0.7
4,711,085	+				-0.3
4,711,085	+				-2.1
4,711,085	+				-1.8
4,711,085	+				-0.5
4,711,086	-				-0.3
4,711,086	-				-0.7
4,711,086	-				-0.5
4,711,086	-				-0.3
4,711,086	-				+1.0
4,711,203	+		DZA65_RS21790	0.29	+0.7
4,711,203	+		DZA65_RS21790	0.29	-2.1
4,711,204	-		DZA65_RS21790	0.29	-3.2
4,711,204	-		DZA65_RS21790	0.29	-1.5
4,711,204	-		DZA65_RS21790	0.29	-1.3
4,711,204	-		DZA65_RS21790	0.29	-0.2
4,711,205	+		DZA65_RS21790	0.30	+0.5
4,711,206	-		DZA65_RS21790	0.30	-3.0
4,711,309	+				-0.5
4,711,420	+				+0.2
4,711,420	+				+0.0
4,711,421	-				+0.8
4,711,421	-				+0.4
4,711,421	-				-1.5
4,711,425	+				+1.0
4,711,425	+				+0.0
4,711,425	+				-1.0
4,711,426	-				-0.3
4,711,426	-				+0.0
4,711,426	-				+1.3
4,711,465	+				-1.5
4,711,466	-				-0.5
4,711,466	-				+2.2
4,711,469	+				-0.8
4,711,469	+				+0.1
4,711,469	+				-1.1
4,711,470	-				+0.7
4,711,478	+				-1.8
4,711,479	-				+0.4
4,711,479	-				-0.5
4,711,490	+				-1.1
4,711,491	-				+0.9
4,711,524	-				+1.2
4,711,539	+				+0.8
4,711,539	+				+0.5
4,711,557	+				-0.8
4,711,557	+				-1.3
4,711,557	+				-1.1
4,711,557	+				-0.1
4,711,557	+				+0.1
4,711,557	+				+0.0
4,711,557	+				-0.6
4,711,557	+				-0.3
4,711,557	+				+0.2
4,711,557	+				+0.0
4,711,557	+				-0.8
4,711,557	+				-0.7
4,711,557	+				-1.0
4,711,557	+				+0.5
4,711,558	-				-1.3
4,711,558	-				+1.0
4,711,558	-				+0.6
4,711,558	-				+0.5
4,711,558	-				+0.2
4,711,558	-				+1.2
4,711,558	-				-0.2
4,711,558	-				-1.4
4,711,559	+				+1.6
4,711,559	+				-0.7
4,711,559	+				+1.0
4,711,559	+				+0.5
4,711,559	+				-1.3
4,711,559	+				-2.1
4,711,559	+				-0.3
4,711,559	+				-2.7
4,711,559	+				+1.0
4,711,560	-				-0.7
4,711,560	-				+0.6
4,711,560	-				+0.5
4,711,560	-				+0.2
4,711,560	-				-0.5
4,711,568	+				-1.5
4,711,569	-				+1.2
4,711,569	-				+0.0
4,711,615	+				-0.2
4,711,615	+				-0.1
4,711,615	+				-2.1
4,711,615	+				-0.4
4,711,615	+				+0.8
4,711,615	+				+0.6
4,711,615	+				-1.1
4,711,615	+				+0.5
4,711,615	+				-0.3
4,711,615	+				-0.5
4,711,615	+				-0.4
4,711,615	+				-0.8
4,711,615	+				-0.7
4,711,615	+				-0.5
4,711,615	+				-1.8
4,711,615	+				-0.9
4,711,616	-				-0.0
4,711,616	-				+0.3
4,711,616	-				-1.0
4,711,616	-				+1.7
4,711,616	-				+0.6
4,711,616	-				-0.1
4,711,616	-				-0.1
4,711,616	-				+1.0
4,711,616	-				+1.3
4,711,616	-				+0.0
4,711,616	-				+1.0
4,711,616	-				+0.4
4,711,619	+				-0.2
4,711,619	+				-1.0
4,711,619	+				+0.9
4,711,619	+				+0.1
4,711,619	+				-0.4
4,711,619	+				+1.0
4,711,619	+				-2.0
4,711,619	+				-2.1
4,711,619	+				+0.0
4,711,619	+				+0.3
4,711,619	+				-0.9
4,711,620	-				+0.6
4,711,620	-				+0.2
4,711,620	-				-0.4
4,711,620	-				+0.5
4,711,620	-				-1.1
4,711,620	-				-0.7
4,711,620	-				+0.2
4,711,620	-				-1.1
4,711,620	-				+1.6
4,711,620	-				-0.3
4,711,620	-				-0.2
4,711,620	-				-0.0
4,711,620	-				+0.7
4,711,623	+				-2.5
4,711,623	+				-2.4
4,711,623	+				-0.2
4,711,623	+				-2.0
4,711,623	+				+0.0
4,711,623	+				-0.3
4,711,623	+				+0.4
4,711,623	+				-0.5
4,711,623	+				-0.5
4,711,623	+				+0.4
4,711,623	+				-0.0
4,711,624	-				+2.5
4,711,624	-				-0.2
4,711,624	-				-1.0
4,711,624	-				-0.9
4,711,624	-				+0.2
4,711,624	-				-0.3
4,711,624	-				+0.6
4,711,624	-				-0.5
4,711,624	-				-2.7
4,711,624	-				+0.6
4,711,624	-				-1.5
4,711,624	-				+0.2
4,711,624	-				-1.1
4,711,640	+				-1.0
4,711,640	+				+3.0
4,711,667	+				-3.5
4,711,667	+				-0.3
4,711,668	-				+0.6
4,711,671	+				-0.0
4,711,671	+				+1.5
4,711,671	+				+0.2
4,711,671	+				+0.2
4,711,671	+				+1.5
4,711,671	+				-0.5
4,711,671	+				+0.0
4,711,671	+				-0.3
4,711,671	+				-0.3
4,711,672	-				+1.2
4,711,672	-				-1.4
4,711,672	-				+0.9
4,711,672	-				-0.2
4,711,681	-				+0.5
4,711,737	+				+2.9
4,711,737	+				+0.2
4,711,737	+				-0.3
4,711,737	+				+0.2
4,711,737	+				-0.1
4,711,737	+				+0.0
4,711,737	+				-0.1
4,711,737	+				-0.7
4,711,738	-				+1.9
4,711,738	-				-1.4
4,711,738	-				+0.0
4,711,738	-				-0.2
4,711,738	-				+0.0
4,711,738	-				+0.9
4,711,738	-				+1.0
4,711,738	-				-0.1
4,711,738	-				-0.5
4,711,738	-				+0.9
4,711,738	-				+0.2
4,711,738	-				+1.0
4,711,785	-				+0.4
4,711,785	-				+0.2
4,711,809	+		DZA65_RS21795	0.11	+0.6
4,711,810	-		DZA65_RS21795	0.11	+0.0
4,711,810	-		DZA65_RS21795	0.11	+1.8
4,711,810	-		DZA65_RS21795	0.11	+0.5
4,711,810	-		DZA65_RS21795	0.11	+1.8
4,711,810	-		DZA65_RS21795	0.11	+0.2
4,711,822	+		DZA65_RS21795	0.12	+0.6
4,711,822	+		DZA65_RS21795	0.12	+0.4
4,711,822	+		DZA65_RS21795	0.12	+0.6
4,711,822	+		DZA65_RS21795	0.12	-0.1
4,711,823	-		DZA65_RS21795	0.13	+0.6
4,711,823	-		DZA65_RS21795	0.13	+0.3
4,711,823	-		DZA65_RS21795	0.13	-0.2
4,711,823	-		DZA65_RS21795	0.13	+0.5
4,711,823	-		DZA65_RS21795	0.13	+0.9
4,711,823	-		DZA65_RS21795	0.13	+0.8
4,711,823	-		DZA65_RS21795	0.13	+0.2
4,711,878	+		DZA65_RS21795	0.21	-1.5
4,711,878	+		DZA65_RS21795	0.21	-0.5
4,711,878	+		DZA65_RS21795	0.21	+0.3
4,711,878	+		DZA65_RS21795	0.21	-1.8
4,711,878	+		DZA65_RS21795	0.21	+1.0
4,711,878	+		DZA65_RS21795	0.21	-0.5
4,711,879	-		DZA65_RS21795	0.21	+1.0
4,711,879	-		DZA65_RS21795	0.21	-0.4
4,711,950	+		DZA65_RS21795	0.32	-1.0
4,711,951	-		DZA65_RS21795	0.32	+0.0
4,711,951	-		DZA65_RS21795	0.32	-1.3
4,711,951	-		DZA65_RS21795	0.32	+0.2
4,711,987	+		DZA65_RS21795	0.37	+1.3
4,711,987	+		DZA65_RS21795	0.37	-0.4
4,711,987	+		DZA65_RS21795	0.37	-0.0
4,711,987	+		DZA65_RS21795	0.37	+0.3
4,711,987	+		DZA65_RS21795	0.37	+0.2
4,711,987	+		DZA65_RS21795	0.37	-1.8
4,711,988	-		DZA65_RS21795	0.37	+1.4
4,711,988	-		DZA65_RS21795	0.37	+0.7
4,712,008	+		DZA65_RS21795	0.40	-0.7
4,712,008	+		DZA65_RS21795	0.40	-1.0
4,712,008	+		DZA65_RS21795	0.40	+0.6
4,712,008	+		DZA65_RS21795	0.40	-1.3
4,712,008	+		DZA65_RS21795	0.40	-1.1
4,712,008	+		DZA65_RS21795	0.40	+0.8
4,712,008	+		DZA65_RS21795	0.40	+0.5
4,712,008	+		DZA65_RS21795	0.40	+1.2
4,712,008	+		DZA65_RS21795	0.40	+0.4
4,712,008	+		DZA65_RS21795	0.40	+2.0
4,712,008	+		DZA65_RS21795	0.40	-0.6
4,712,009	-		DZA65_RS21795	0.40	+0.7
4,712,009	-		DZA65_RS21795	0.40	-1.1
4,712,009	-		DZA65_RS21795	0.40	+0.6
4,712,009	-		DZA65_RS21795	0.40	+0.4
4,712,009	-		DZA65_RS21795	0.40	+0.7
4,712,009	-		DZA65_RS21795	0.40	+1.2
4,712,009	-		DZA65_RS21795	0.40	-1.1
4,712,009	-		DZA65_RS21795	0.40	+1.3
4,712,031	+		DZA65_RS21795	0.44	-0.6
4,712,032	-		DZA65_RS21795	0.44	+1.1
4,712,032	-		DZA65_RS21795	0.44	+0.6
4,712,092	+		DZA65_RS21795	0.53	-0.2
4,712,092	+		DZA65_RS21795	0.53	-2.1
4,712,092	+		DZA65_RS21795	0.53	+0.5
4,712,092	+		DZA65_RS21795	0.53	+0.6
4,712,188	-		DZA65_RS21795	0.67	+0.2
4,712,227	+		DZA65_RS21795	0.73	-1.5
4,712,227	+		DZA65_RS21795	0.73	+0.2
4,712,228	-		DZA65_RS21795	0.73	-1.5
4,712,228	-		DZA65_RS21795	0.73	+0.4
4,712,284	+				+0.5
4,712,285	-		DZA65_RS21795	0.81	-0.1
4,712,285	-		DZA65_RS21795	0.81	+1.6
4,712,285	-		DZA65_RS21795	0.81	+0.0
4,712,285	-		DZA65_RS21795	0.81	-0.5
4,712,285	-		DZA65_RS21795	0.81	-1.0
4,712,297	+		DZA65_RS21795	0.83	-1.4
4,712,297	+		DZA65_RS21795	0.83	-0.1
4,712,298	-		DZA65_RS21795	0.83	+1.7
4,712,298	-		DZA65_RS21795	0.83	+0.7
4,712,298	-		DZA65_RS21795	0.83	+0.4
4,712,315	+		DZA65_RS21795	0.86	+1.0
4,712,316	-		DZA65_RS21795	0.86	+0.0
4,712,329	+		DZA65_RS21795	0.88	+1.5
4,712,329	+		DZA65_RS21795	0.88	-1.4
4,712,330	-		DZA65_RS21795	0.88	-1.6
4,712,336	+		DZA65_RS21795	0.89	-0.7
4,712,336	+		DZA65_RS21795	0.89	-1.3
4,712,337	-		DZA65_RS21795	0.89	-0.4
4,712,337	-		DZA65_RS21795	0.89	-0.5
4,712,343	+				-0.7
4,712,344	-				-1.3
4,712,344	-				+0.7
4,712,344	-				+1.3
4,712,344	-				+1.2
4,712,344	-				+0.3
4,712,344	-				+0.8
4,712,422	-				-0.4
4,712,427	+				-0.8
4,712,427	+				-1.8
4,712,428	-				-1.3
4,712,428	-				+0.5
4,712,428	-				-0.7
4,712,499	-				+2.4
4,712,516	+				+1.5
4,712,517	-				-0.9
4,712,517	-				+0.4
4,712,538	-				+0.6
4,712,558	+				+2.5
4,712,559	-				+1.7
4,712,628	+				-2.1
4,712,628	+				+0.1
4,712,628	+				+0.2
4,712,628	+				+2.3
4,712,628	+				-1.3
4,712,628	+				-1.8
4,712,628	+				-0.2
4,712,628	+				-0.2
4,712,628	+				+0.0
4,712,628	+				+1.0
4,712,629	-				-0.5
4,712,629	-				-0.8
4,712,629	-				-0.2
4,712,629	-				-0.2
4,712,629	-				+0.2
4,712,631	-				-2.7
4,712,772	-		DZA65_RS21800	0.29	+0.0
4,712,838	+		DZA65_RS21800	0.40	+0.4
4,712,839	-		DZA65_RS21800	0.41	+0.7
4,713,065	+		DZA65_RS21800	0.81	-0.3
4,713,148	+				+2.7
4,713,148	+				-0.4
4,713,148	+				+0.2
4,713,149	-				-1.3
4,713,149	-				+0.7
4,713,149	-				-3.0
4,713,149	-				+0.5
4,713,268	+				+0.0
4,713,268	+				+0.3
4,713,269	-				+0.2
4,713,269	-				+0.3
4,713,322	+				+0.6
4,713,322	+				-0.3
4,713,323	-				+0.8
4,713,323	-				-0.6
4,713,323	-				-0.4
4,713,323	-				-0.1
4,713,323	-				-0.3
4,713,323	-				+0.1
4,713,323	-				+0.9
4,713,323	-				+0.8
4,713,323	-				+1.3
4,713,323	-				+0.0
4,713,323	-				-0.5
4,713,341	+				-0.3
4,713,341	+				+0.2
4,713,342	-				-0.2
4,713,342	-				-1.0
4,713,342	-				-0.9
4,713,343	+				+0.6
4,713,343	+				+1.5
4,713,343	+				+4.6
4,713,343	+				+0.2
4,713,343	+				-0.5
4,713,343	+				-0.1
4,713,343	+				+0.6
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4,713,344	-				-1.4
4,713,344	-				+0.7
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4,713,344	-				-1.3
4,713,344	-				-0.7
4,713,344	-				-0.5
4,713,344	-				-3.4
4,713,344	-				-0.5
4,713,344	-				+0.0
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4,713,344	-				+0.0
4,713,344	-				+0.5
4,713,344	-				-2.7
4,713,375	+		DZA65_RS21805	0.12	+0.8
4,713,375	+		DZA65_RS21805	0.12	+0.7
4,713,376	-		DZA65_RS21805	0.12	-2.5
4,713,406	+		DZA65_RS21805	0.14	+0.3
4,713,406	+		DZA65_RS21805	0.14	+0.8
4,713,406	+		DZA65_RS21805	0.14	-0.3
4,713,406	+		DZA65_RS21805	0.14	-0.8
4,713,406	+		DZA65_RS21805	0.14	+0.2
4,713,406	+		DZA65_RS21805	0.14	+0.4
4,713,406	+		DZA65_RS21805	0.14	-0.7
4,713,406	+		DZA65_RS21805	0.14	-0.3
4,713,406	+		DZA65_RS21805	0.14	+0.2
4,713,406	+		DZA65_RS21805	0.14	+0.8
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4,713,407	-		DZA65_RS21805	0.14	+0.7
4,713,407	-		DZA65_RS21805	0.14	-0.0
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4,713,407	-		DZA65_RS21805	0.14	-0.4
4,713,407	-		DZA65_RS21805	0.14	+0.9
4,713,407	-		DZA65_RS21805	0.14	+2.0