Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21165

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,573,855	+		DZA65_RS21155	0.51	-1.6
4,573,855	+		DZA65_RS21155	0.51	+1.0
4,573,856	-		DZA65_RS21155	0.51	-0.7
4,573,856	-		DZA65_RS21155	0.51	+1.0
4,573,856	-		DZA65_RS21155	0.51	-2.0
4,573,856	-		DZA65_RS21155	0.51	+0.4
4,573,856	-		DZA65_RS21155	0.51	+1.2
4,573,876	+		DZA65_RS21155	0.53	-0.5
4,573,876	+		DZA65_RS21155	0.53	-2.7
4,573,877	-		DZA65_RS21155	0.53	-1.0
4,573,877	-		DZA65_RS21155	0.53	+0.2
4,573,877	-		DZA65_RS21155	0.53	+1.0
4,573,900	-		DZA65_RS21155	0.56	-0.2
4,573,900	-		DZA65_RS21155	0.56	+0.4
4,573,900	-		DZA65_RS21155	0.56	+0.5
4,573,900	-		DZA65_RS21155	0.56	-0.1
4,573,902	+		DZA65_RS21155	0.57	-1.3
4,573,902	+		DZA65_RS21155	0.57	-0.4
4,573,902	+		DZA65_RS21155	0.57	+2.2
4,573,902	+				-0.0
4,573,902	+		DZA65_RS21155	0.57	+0.5
4,573,902	+		DZA65_RS21155	0.57	+0.7
4,573,902	+		DZA65_RS21155	0.57	-0.6
4,573,902	+		DZA65_RS21155	0.57	+0.3
4,573,903	-		DZA65_RS21155	0.57	-1.8
4,573,908	+		DZA65_RS21155	0.57	+0.4
4,573,908	+		DZA65_RS21155	0.57	+1.0
4,573,908	+		DZA65_RS21155	0.57	-0.3
4,573,909	-		DZA65_RS21155	0.58	-0.3
4,573,926	+		DZA65_RS21155	0.60	+0.4
4,573,926	+		DZA65_RS21155	0.60	-1.0
4,573,926	+		DZA65_RS21155	0.60	+0.1
4,573,926	+		DZA65_RS21155	0.60	+0.8
4,574,040	+		DZA65_RS21155	0.75	-0.0
4,574,040	+		DZA65_RS21155	0.75	-1.3
4,574,040	+		DZA65_RS21155	0.75	+0.7
4,574,040	+		DZA65_RS21155	0.75	+0.3
4,574,040	+		DZA65_RS21155	0.75	+1.0
4,574,041	-		DZA65_RS21155	0.75	-1.0
4,574,041	-		DZA65_RS21155	0.75	+0.7
4,574,041	-		DZA65_RS21155	0.75	-0.1
4,574,041	-		DZA65_RS21155	0.75	-0.6
4,574,041	-		DZA65_RS21155	0.75	-0.1
4,574,122	-		DZA65_RS21155	0.85	-1.8
4,574,155	+		DZA65_RS21155	0.89	-1.9
4,574,204	+				-0.2
4,574,210	+				+2.0
4,574,238	+				-0.2
4,574,238	+				+1.3
4,574,238	+				+2.0
4,574,239	-				+0.6
4,574,239	-				+0.3
4,574,239	-				-0.0
4,574,239	-				+0.5
4,574,239	-				-0.8
4,574,241	-				+0.2
4,574,241	-				+0.9
4,574,258	+				-2.3
4,574,277	+				+0.8
4,574,277	+				+0.9
4,574,278	-				-2.6
4,574,368	+		DZA65_RS21160	0.24	+1.6
4,574,370	+		DZA65_RS21160	0.25	+0.4
4,574,371	-		DZA65_RS21160	0.25	+0.7
4,574,509	+		DZA65_RS21160	0.51	+0.8
4,574,613	+		DZA65_RS21160	0.70	+0.4
4,574,613	+		DZA65_RS21160	0.70	+1.7
4,574,613	+		DZA65_RS21160	0.70	+0.4
4,574,613	+		DZA65_RS21160	0.70	+1.1
4,574,613	+				+2.0
4,574,613	+		DZA65_RS21160	0.70	+1.0
4,574,614	-		DZA65_RS21160	0.70	+0.7
4,574,614	-		DZA65_RS21160	0.70	+0.5
4,574,632	+		DZA65_RS21160	0.74	-1.8
4,574,661	+		DZA65_RS21160	0.79	-0.4
4,574,703	+		DZA65_RS21160	0.87	-1.2
4,574,762	+				+0.3
4,574,762	+				-1.8
4,574,762	+				+0.8
4,574,762	+				+0.2
4,574,762	+				+0.3
4,574,762	+				-0.0
4,574,762	+				-1.8
4,574,762	+				-2.2
4,574,762	+				-0.3
4,574,763	-				-1.8
4,574,763	-				-1.3
4,574,763	-				+0.1
4,574,763	-				-0.4
4,574,763	-				+0.3
4,574,763	-				+1.4
4,574,858	+				-0.0
4,574,858	+				-1.0
4,574,858	+				-0.7
4,574,858	+				-1.2
4,574,858	+				+0.3
4,574,858	+				-0.9
4,574,858	+				-1.0
4,574,858	+				-0.6
4,574,858	+				+1.0
4,574,858	+				-1.7
4,574,858	+				+0.1
4,574,858	+				-0.0
4,574,859	-				-1.0
4,574,859	-				-0.0
4,574,859	-				-2.8
4,574,859	-				+0.7
4,574,859	-				-0.0
4,574,859	-				-1.8
4,574,859	-				-1.2
4,574,859	-				+0.6
4,574,859	-				-0.6
4,574,859	-				+0.3
4,574,859	-				-0.0
4,574,932	+		DZA65_RS21165	0.11	+1.5
4,574,981	+		DZA65_RS21165	0.14	-0.3
4,574,981	+		DZA65_RS21165	0.14	-0.0
4,574,981	+		DZA65_RS21165	0.14	-0.0
4,574,982	-		DZA65_RS21165	0.14	-0.2
4,574,982	-		DZA65_RS21165	0.14	+1.3
4,575,105	+		DZA65_RS21165	0.23	-1.0
4,575,106	-		DZA65_RS21165	0.24	-2.0
4,575,149	+		DZA65_RS21165	0.27	+2.6
4,575,149	+		DZA65_RS21165	0.27	-0.2
4,575,149	+		DZA65_RS21165	0.27	-0.6
4,575,149	+		DZA65_RS21165	0.27	+1.7
4,575,149	+		DZA65_RS21165	0.27	-0.6
4,575,149	+		DZA65_RS21165	0.27	-0.2
4,575,149	+		DZA65_RS21165	0.27	-0.0
4,575,149	+		DZA65_RS21165	0.27	-0.3
4,575,149	+		DZA65_RS21165	0.27	+0.2
4,575,149	+		DZA65_RS21165	0.27	-0.3
4,575,149	+		DZA65_RS21165	0.27	-0.0
4,575,149	+		DZA65_RS21165	0.27	-0.8
4,575,149	+		DZA65_RS21165	0.27	-0.0
4,575,149	+		DZA65_RS21165	0.27	-0.1
4,575,149	+		DZA65_RS21165	0.27	+0.4
4,575,150	-		DZA65_RS21165	0.27	+0.3
4,575,150	-		DZA65_RS21165	0.27	+0.1
4,575,150	-		DZA65_RS21165	0.27	+1.0
4,575,150	-		DZA65_RS21165	0.27	-1.6
4,575,150	-				+0.7
4,575,150	-		DZA65_RS21165	0.27	-2.1
4,575,150	-		DZA65_RS21165	0.27	+1.3
4,575,153	+		DZA65_RS21165	0.27	+0.8
4,575,153	+		DZA65_RS21165	0.27	+0.8
4,575,153	+		DZA65_RS21165	0.27	+0.1
4,575,154	-		DZA65_RS21165	0.27	+1.7
4,575,154	-		DZA65_RS21165	0.27	-0.1
4,575,154	-		DZA65_RS21165	0.27	-1.3
4,575,154	-		DZA65_RS21165	0.27	+0.7
4,575,154	-		DZA65_RS21165	0.27	+0.4
4,575,383	+		DZA65_RS21165	0.44	-0.1
4,575,383	+		DZA65_RS21165	0.44	+1.2
4,575,383	+		DZA65_RS21165	0.44	-0.7
4,575,383	+		DZA65_RS21165	0.44	+2.2
4,575,383	+		DZA65_RS21165	0.44	+0.2
4,575,383	+		DZA65_RS21165	0.44	-1.6
4,575,383	+		DZA65_RS21165	0.44	+0.4
4,575,384	-		DZA65_RS21165	0.44	+0.9
4,575,384	-		DZA65_RS21165	0.44	+0.8
4,575,384	-		DZA65_RS21165	0.44	-0.6
4,575,402	+		DZA65_RS21165	0.45	+1.0
4,575,403	-		DZA65_RS21165	0.45	-0.2
4,575,403	-		DZA65_RS21165	0.45	+0.5
4,575,403	-		DZA65_RS21165	0.45	-1.0
4,575,403	-		DZA65_RS21165	0.45	+0.5
4,575,440	+		DZA65_RS21165	0.48	-0.8
4,575,440	+		DZA65_RS21165	0.48	+0.5
4,575,551	+		DZA65_RS21165	0.56	-2.2
4,575,551	+		DZA65_RS21165	0.56	-0.0
4,575,551	+		DZA65_RS21165	0.56	+0.6
4,575,551	+		DZA65_RS21165	0.56	+1.5
4,575,552	-		DZA65_RS21165	0.56	-1.2
4,575,552	-		DZA65_RS21165	0.56	-1.0
4,575,552	-		DZA65_RS21165	0.56	+0.6
4,575,552	-		DZA65_RS21165	0.56	-1.3
4,575,552	-		DZA65_RS21165	0.56	-2.3
4,575,573	+		DZA65_RS21165	0.58	+0.7
4,575,573	+		DZA65_RS21165	0.58	-1.9
4,575,573	+		DZA65_RS21165	0.58	-1.0
4,575,573	+		DZA65_RS21165	0.58	+0.1
4,575,573	+		DZA65_RS21165	0.58	+0.6
4,575,574	-		DZA65_RS21165	0.58	-1.5
4,575,574	-		DZA65_RS21165	0.58	-0.1
4,575,694	-		DZA65_RS21165	0.67	-1.1
4,575,842	+		DZA65_RS21165	0.77	-0.6
4,575,851	+		DZA65_RS21165	0.78	-0.8
4,575,851	+		DZA65_RS21165	0.78	-1.1
4,575,851	+		DZA65_RS21165	0.78	-1.6
4,575,851	+		DZA65_RS21165	0.78	+1.7
4,575,852	-		DZA65_RS21165	0.78	+1.0
4,575,852	-		DZA65_RS21165	0.78	+2.0
4,575,852	-		DZA65_RS21165	0.78	-0.1
4,575,852	-		DZA65_RS21165	0.78	-0.5
4,575,934	+		DZA65_RS21165	0.84	+0.7
4,575,934	+		DZA65_RS21165	0.84	+1.0
4,575,934	+		DZA65_RS21165	0.84	-2.0
4,575,935	-		DZA65_RS21165	0.84	+1.0
4,575,945	+				-1.0
4,575,946	-		DZA65_RS21165	0.85	-0.0
4,575,981	+		DZA65_RS21165	0.88	+2.3
4,575,981	+		DZA65_RS21165	0.88	+0.4
4,575,981	+				-0.0
4,576,149	+				-1.6
4,576,149	+				+1.2
4,576,150	-				+0.1
4,576,169	+				+1.0
4,576,169	+				+1.6
4,576,169	+				+0.8
4,576,169	+				+0.0
4,576,169	+				-0.2
4,576,169	+				+1.9
4,576,169	+				+1.1
4,576,169	+				+1.3
4,576,169	+				+0.7
4,576,170	-				+2.0
4,576,170	-				-1.2
4,576,170	-				-0.8
4,576,170	-				-0.2
4,576,170	-				-0.2
4,576,170	-				-1.3
4,576,170	-				+0.3
4,576,223	+				+1.7
4,576,223	+				+0.3
4,576,224	-				+0.7
4,576,224	-				+0.1
4,576,224	-				-0.4
4,576,225	+				-0.7
4,576,225	+				+0.1
4,576,226	-				-0.5
4,576,226	-				+0.3
4,576,226	-				-0.3
4,576,247	+				-2.9
4,576,247	+				+1.0
4,576,247	+				+0.4
4,576,247	+				+0.3
4,576,247	+				+1.0
4,576,247	+				-0.1
4,576,247	+				+0.2
4,576,247	+				+1.3
4,576,247	+				+1.6
4,576,247	+				+0.5
4,576,247	+				-0.4
4,576,247	+				+1.0
4,576,247	+				+1.5
4,576,247	+				-0.5
4,576,247	+				+0.2
4,576,247	+				-0.1
4,576,248	-				+1.0
4,576,248	-				-0.1
4,576,248	-				-2.1
4,576,248	-				-0.7
4,576,248	-				+0.7
4,576,248	-				-1.6
4,576,248	-				-0.8
4,576,248	-				-0.1
4,576,248	-				-1.3
4,576,248	-				-0.1
4,576,248	-				-0.1
4,576,248	-				-0.5
4,576,248	-				+0.2
4,576,249	+				-1.2
4,576,249	+				+1.8
4,576,249	+				-0.3
4,576,250	-				-0.7
4,576,252	-				+0.4
4,576,252	-				-0.1
4,576,252	-				-0.4
4,576,264	+				+0.0
4,576,265	-				+2.1
4,576,269	+				-0.3
4,576,269	+				+0.2
4,576,269	+				-0.3
4,576,269	+				-0.3
4,576,269	+				+0.2
4,576,269	+				+0.6
4,576,269	+				+0.6
4,576,269	+				-0.4
4,576,269	+				-0.8
4,576,270	-				-1.3
4,576,270	-				+0.4
4,576,270	-				+1.7
4,576,270	-				-0.3
4,576,277	-				-0.3
4,576,320	-				+1.5
4,576,359	+				+1.4
4,576,359	+				+0.7
4,576,359	+				+2.3
4,576,359	+				+0.0
4,576,360	-				+0.5
4,576,367	+				+0.4
4,576,367	+				+1.0
4,576,367	+				-0.6
4,576,367	+				+0.8
4,576,367	+				+1.1
4,576,368	-				+0.4
4,576,368	-				-2.9
4,576,384	+				+0.7
4,576,385	-				-0.3
4,576,385	-				-0.9
4,576,392	+				+0.3
4,576,392	+				+0.8
4,576,392	+				-1.4
4,576,392	+				+0.9
4,576,393	-				-1.7
4,576,393	-				-0.2
4,576,393	-				-0.6
4,576,393	-				+2.8
4,576,425	+				+1.1
4,576,425	+				+1.0
4,576,425	+				-0.6
4,576,425	+				+0.5
4,576,425	+				-0.6
4,576,425	+				-2.5
4,576,425	+				+0.0
4,576,425	+				-1.0
4,576,425	+				-0.2
4,576,425	+				+2.6
4,576,426	-				+0.2
4,576,436	+				-0.2
4,576,436	+				+0.3
4,576,436	+				-0.2
4,576,436	+				+0.8
4,576,436	+				+0.1
4,576,437	-				-1.4
4,576,437	-				+0.3
4,576,437	-				-2.2
4,576,440	+				+1.8
4,576,475	-				-0.2
4,576,477	+				+0.3
4,576,478	-				+0.0
4,576,486	+				+0.2
4,576,486	+				-0.5
4,576,486	+				-0.9
4,576,487	-				-0.7
4,576,496	-				+0.6
4,576,504	+				-1.2
4,576,504	+				-0.6
4,576,505	-				+1.3
4,576,520	+				+1.3
4,576,553	+		DZA65_RS21170	0.18	+0.2
4,576,553	+		DZA65_RS21170	0.18	-0.9
4,576,553	+		DZA65_RS21170	0.18	+1.2
4,576,554	-		DZA65_RS21170	0.18	-1.3
4,576,554	-		DZA65_RS21170	0.18	-0.8
4,576,578	-		DZA65_RS21170	0.25	+0.0
4,576,582	+		DZA65_RS21170	0.26	+0.2
4,576,644	+		DZA65_RS21170	0.45	+1.9
4,576,645	-		DZA65_RS21170	0.45	-1.6
4,576,645	-		DZA65_RS21170	0.45	-0.9
4,576,656	-		DZA65_RS21170	0.48	-0.4
4,576,675	+		DZA65_RS21170	0.54	+1.6
4,576,676	-		DZA65_RS21170	0.54	-2.2
4,576,676	-		DZA65_RS21170	0.54	+0.5
4,576,789	+		DZA65_RS21170	0.88	-0.4
4,576,789	+		DZA65_RS21170	0.88	-3.1
4,576,843	+				+1.0
4,576,844	-				-0.4
4,576,844	-				+0.0
4,576,862	-				+1.6
4,576,870	-				-0.4
4,576,881	+				-2.0
4,576,881	+				+0.3
4,576,881	+				+1.0
4,576,881	+				+1.8
4,576,881	+				-1.0
4,576,881	+				-0.3
4,576,882	-				+0.7
4,576,882	-				+0.2
4,576,882	-				-0.3
4,576,882	-				-0.3
4,576,882	-				-1.0
4,576,882	-				+1.0
4,576,882	-				+1.2
4,576,882	-				+2.0
4,576,917	+				-0.7
4,576,917	+				-0.6
4,577,000	-				+1.3
4,577,055	-		DZA65_RS21175	0.14	-1.5
4,577,061	-		DZA65_RS21175	0.14	+1.2
4,577,081	+		DZA65_RS21175	0.16	+1.2
4,577,081	+		DZA65_RS21175	0.16	-0.8
4,577,081	+		DZA65_RS21175	0.16	+1.4
4,577,082	-		DZA65_RS21175	0.16	-0.5
4,577,082	-		DZA65_RS21175	0.16	+0.0
4,577,082	-		DZA65_RS21175	0.16	-0.5
4,577,082	-		DZA65_RS21175	0.16	-1.8
4,577,082	-		DZA65_RS21175	0.16	+0.3
4,577,082	-		DZA65_RS21175	0.16	-1.2
4,577,082	-		DZA65_RS21175	0.16	-0.6
4,577,093	+		DZA65_RS21175	0.17	+0.2
4,577,093	+		DZA65_RS21175	0.17	+1.0
4,577,144	+		DZA65_RS21175	0.22	+1.0