Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21065 and DZA65_RS21075 are separated by 173 nucleotides DZA65_RS21075 and DZA65_RS21080 are separated by 369 nucleotides
DZA65_RS21065: DZA65_RS21065 - AbrB family transcriptional regulator, at 4,554,432 to 4,555,490
_RS21065
DZA65_RS21075: DZA65_RS21075 - magnesium/cobalt transporter CorA, at 4,555,664 to 4,556,614
_RS21075
DZA65_RS21080: DZA65_RS21080 - DNA helicase II, at 4,556,984 to 4,559,146
_RS21080
Position (kb) 4555
4556
4557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4554.680 kb on + strand, within DZA65_RS21065 at 4554.681 kb on - strand, within DZA65_RS21065 at 4554.772 kb on + strand, within DZA65_RS21065 at 4554.772 kb on + strand, within DZA65_RS21065 at 4554.787 kb on - strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.832 kb on - strand at 4554.832 kb on - strand, within DZA65_RS21065 at 4554.832 kb on - strand, within DZA65_RS21065 at 4554.875 kb on + strand, within DZA65_RS21065 at 4554.875 kb on + strand, within DZA65_RS21065 at 4554.875 kb on + strand, within DZA65_RS21065 at 4554.875 kb on + strand, within DZA65_RS21065 at 4554.905 kb on + strand, within DZA65_RS21065 at 4554.905 kb on + strand, within DZA65_RS21065 at 4554.905 kb on + strand, within DZA65_RS21065 at 4554.905 kb on + strand, within DZA65_RS21065 at 4554.906 kb on - strand, within DZA65_RS21065 at 4554.971 kb on + strand, within DZA65_RS21065 at 4555.039 kb on - strand, within DZA65_RS21065 at 4555.049 kb on - strand, within DZA65_RS21065 at 4555.049 kb on - strand, within DZA65_RS21065 at 4555.049 kb on - strand, within DZA65_RS21065 at 4555.164 kb on - strand, within DZA65_RS21065 at 4555.164 kb on - strand, within DZA65_RS21065 at 4555.165 kb on + strand, within DZA65_RS21065 at 4555.165 kb on + strand, within DZA65_RS21065 at 4555.165 kb on + strand, within DZA65_RS21065 at 4555.165 kb on + strand, within DZA65_RS21065 at 4555.166 kb on - strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.224 kb on + strand, within DZA65_RS21065 at 4555.224 kb on + strand, within DZA65_RS21065 at 4555.224 kb on + strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.308 kb on - strand, within DZA65_RS21065 at 4555.308 kb on - strand, within DZA65_RS21065 at 4555.334 kb on + strand, within DZA65_RS21065 at 4555.411 kb on + strand at 4555.411 kb on + strand at 4555.411 kb on + strand at 4555.411 kb on + strand at 4555.412 kb on - strand at 4555.412 kb on - strand at 4555.412 kb on - strand at 4555.412 kb on - strand at 4555.504 kb on + strand at 4555.504 kb on + strand at 4555.504 kb on + strand at 4555.504 kb on + strand at 4555.504 kb on + strand at 4555.505 kb on - strand at 4555.505 kb on - strand at 4555.505 kb on - strand at 4555.505 kb on - strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.690 kb on - strand at 4555.695 kb on + strand at 4555.725 kb on - strand at 4555.783 kb on + strand, within DZA65_RS21075 at 4555.784 kb on - strand, within DZA65_RS21075 at 4555.784 kb on - strand, within DZA65_RS21075 at 4555.788 kb on + strand, within DZA65_RS21075 at 4555.789 kb on - strand, within DZA65_RS21075 at 4556.103 kb on + strand, within DZA65_RS21075 at 4556.272 kb on - strand, within DZA65_RS21075 at 4556.310 kb on + strand, within DZA65_RS21075 at 4556.310 kb on + strand, within DZA65_RS21075 at 4556.376 kb on + strand, within DZA65_RS21075 at 4556.776 kb on - strand at 4556.776 kb on - strand at 4556.795 kb on - strand at 4556.795 kb on - strand at 4556.795 kb on - strand at 4556.795 kb on - strand at 4556.802 kb on - strand at 4556.807 kb on - strand at 4556.874 kb on - strand at 4556.915 kb on + strand at 4556.915 kb on + strand at 4556.915 kb on + strand at 4556.915 kb on + strand at 4556.915 kb on + strand at 4556.916 kb on - strand at 4556.916 kb on - strand at 4556.916 kb on - strand at 4556.932 kb on + strand at 4556.933 kb on - strand at 4556.933 kb on - strand at 4556.985 kb on + strand at 4556.985 kb on + strand at 4556.986 kb on - strand at 4556.987 kb on + strand at 4556.987 kb on + strand at 4556.987 kb on + strand at 4556.988 kb on - strand at 4556.988 kb on - strand at 4556.988 kb on - strand at 4556.988 kb on - strand at 4556.988 kb on - strand at 4557.007 kb on - strand at 4557.085 kb on + strand at 4557.085 kb on + strand at 4557.086 kb on - strand at 4557.086 kb on - strand at 4557.086 kb on - strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.138 kb on + strand at 4557.139 kb on - strand at 4557.139 kb on - strand at 4557.139 kb on - strand at 4557.215 kb on + strand, within DZA65_RS21080 at 4557.215 kb on + strand, within DZA65_RS21080 at 4557.216 kb on - strand at 4557.270 kb on + strand, within DZA65_RS21080 at 4557.270 kb on + strand, within DZA65_RS21080 at 4557.271 kb on - strand, within DZA65_RS21080 at 4557.307 kb on - strand, within DZA65_RS21080 at 4557.586 kb on - strand, within DZA65_RS21080 at 4557.586 kb on - strand, within DZA65_RS21080
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,554,680 + DZA65_RS21065 0.23 +2.3 4,554,681 - DZA65_RS21065 0.24 -0.9 4,554,772 + DZA65_RS21065 0.32 -3.7 4,554,772 + DZA65_RS21065 0.32 +1.0 4,554,787 - DZA65_RS21065 0.34 -0.3 4,554,804 + DZA65_RS21065 0.35 +0.8 4,554,804 + DZA65_RS21065 0.35 +1.0 4,554,804 + DZA65_RS21065 0.35 +1.0 4,554,804 + DZA65_RS21065 0.35 -2.5 4,554,804 + DZA65_RS21065 0.35 +1.6 4,554,804 + DZA65_RS21065 0.35 +0.3 4,554,804 + DZA65_RS21065 0.35 -0.4 4,554,804 + DZA65_RS21065 0.35 -0.2 4,554,805 - DZA65_RS21065 0.35 -0.9 4,554,805 - DZA65_RS21065 0.35 +0.7 4,554,805 - DZA65_RS21065 0.35 +0.6 4,554,805 - DZA65_RS21065 0.35 +0.3 4,554,805 - DZA65_RS21065 0.35 +0.5 4,554,805 - DZA65_RS21065 0.35 -0.2 4,554,805 - DZA65_RS21065 0.35 -2.2 4,554,805 - DZA65_RS21065 0.35 +1.8 4,554,805 - DZA65_RS21065 0.35 +0.2 4,554,828 + DZA65_RS21065 0.37 +0.4 4,554,828 + DZA65_RS21065 0.37 -1.6 4,554,828 + DZA65_RS21065 0.37 +0.7 4,554,828 + DZA65_RS21065 0.37 +0.3 4,554,828 + DZA65_RS21065 0.37 -2.0 4,554,828 + DZA65_RS21065 0.37 -0.6 4,554,828 + DZA65_RS21065 0.37 -0.9 4,554,828 + DZA65_RS21065 0.37 +1.0 4,554,828 + DZA65_RS21065 0.37 -0.7 4,554,828 + DZA65_RS21065 0.37 +1.6 4,554,828 + DZA65_RS21065 0.37 +0.4 4,554,829 - DZA65_RS21065 0.37 +0.2 4,554,829 - DZA65_RS21065 0.37 +0.3 4,554,829 - DZA65_RS21065 0.37 +2.2 4,554,829 - DZA65_RS21065 0.37 -0.6 4,554,829 - DZA65_RS21065 0.37 +0.1 4,554,829 - DZA65_RS21065 0.37 +0.5 4,554,829 - DZA65_RS21065 0.37 +1.3 4,554,829 - DZA65_RS21065 0.37 -0.0 4,554,829 - DZA65_RS21065 0.37 -0.9 4,554,832 - -0.0 4,554,832 - DZA65_RS21065 0.38 +1.0 4,554,832 - DZA65_RS21065 0.38 +0.5 4,554,875 + DZA65_RS21065 0.42 -0.8 4,554,875 + DZA65_RS21065 0.42 -1.6 4,554,875 + DZA65_RS21065 0.42 -0.7 4,554,875 + DZA65_RS21065 0.42 -0.2 4,554,905 + DZA65_RS21065 0.45 +1.2 4,554,905 + DZA65_RS21065 0.45 +0.4 4,554,905 + DZA65_RS21065 0.45 -0.8 4,554,905 + DZA65_RS21065 0.45 -1.1 4,554,906 - DZA65_RS21065 0.45 -0.5 4,554,971 + DZA65_RS21065 0.51 -0.0 4,555,039 - DZA65_RS21065 0.57 +1.1 4,555,049 - DZA65_RS21065 0.58 -0.4 4,555,049 - DZA65_RS21065 0.58 +0.4 4,555,049 - DZA65_RS21065 0.58 -0.4 4,555,164 - DZA65_RS21065 0.69 +0.4 4,555,164 - DZA65_RS21065 0.69 -2.0 4,555,165 + DZA65_RS21065 0.69 -2.2 4,555,165 + DZA65_RS21065 0.69 -2.5 4,555,165 + DZA65_RS21065 0.69 +0.9 4,555,165 + DZA65_RS21065 0.69 +1.6 4,555,166 - DZA65_RS21065 0.69 +2.1 4,555,220 + DZA65_RS21065 0.74 -0.9 4,555,220 + DZA65_RS21065 0.74 -0.0 4,555,220 + DZA65_RS21065 0.74 +0.3 4,555,220 + DZA65_RS21065 0.74 +0.6 4,555,220 + DZA65_RS21065 0.74 +1.3 4,555,221 - DZA65_RS21065 0.75 -0.0 4,555,221 - DZA65_RS21065 0.75 -1.0 4,555,221 - DZA65_RS21065 0.75 -0.5 4,555,221 - DZA65_RS21065 0.75 +1.4 4,555,221 - DZA65_RS21065 0.75 -0.6 4,555,221 - DZA65_RS21065 0.75 -2.0 4,555,224 + DZA65_RS21065 0.75 -0.1 4,555,224 + DZA65_RS21065 0.75 -0.8 4,555,224 + DZA65_RS21065 0.75 +0.8 4,555,225 - DZA65_RS21065 0.75 -1.8 4,555,225 - DZA65_RS21065 0.75 -1.3 4,555,225 - DZA65_RS21065 0.75 +0.2 4,555,225 - DZA65_RS21065 0.75 +1.0 4,555,225 - DZA65_RS21065 0.75 -0.6 4,555,225 - DZA65_RS21065 0.75 -0.4 4,555,225 - DZA65_RS21065 0.75 -1.8 4,555,225 - DZA65_RS21065 0.75 -0.4 4,555,225 - DZA65_RS21065 0.75 +0.5 4,555,308 - DZA65_RS21065 0.83 -0.7 4,555,308 - DZA65_RS21065 0.83 -1.0 4,555,334 + DZA65_RS21065 0.85 +0.1 4,555,411 + +1.0 4,555,411 + -1.3 4,555,411 + +1.0 4,555,411 + -3.0 4,555,412 - -0.7 4,555,412 - -0.9 4,555,412 - -0.0 4,555,412 - +1.2 4,555,504 + +0.4 4,555,504 + +0.9 4,555,504 + +0.8 4,555,504 + +0.3 4,555,504 + +1.8 4,555,505 - +0.8 4,555,505 - +0.3 4,555,505 - -0.0 4,555,505 - +0.6 4,555,572 + -2.6 4,555,572 + +1.0 4,555,572 + +1.0 4,555,572 + +0.4 4,555,572 + +1.0 4,555,572 + +1.4 4,555,572 + +0.7 4,555,572 + -1.0 4,555,572 + -0.0 4,555,572 + +0.5 4,555,572 + +1.7 4,555,572 + +1.5 4,555,573 - -1.3 4,555,573 - -1.1 4,555,573 - +0.4 4,555,573 - +2.7 4,555,573 - -2.0 4,555,573 - -1.4 4,555,573 - +0.6 4,555,573 - -0.3 4,555,573 - -0.7 4,555,573 - -0.7 4,555,573 - -0.1 4,555,573 - -0.6 4,555,573 - -0.8 4,555,573 - -0.3 4,555,690 - +0.6 4,555,695 + -0.6 4,555,725 - +0.3 4,555,783 + DZA65_RS21075 0.13 +0.4 4,555,784 - DZA65_RS21075 0.13 -1.7 4,555,784 - DZA65_RS21075 0.13 -1.3 4,555,788 + DZA65_RS21075 0.13 +0.1 4,555,789 - DZA65_RS21075 0.13 -1.3 4,556,103 + DZA65_RS21075 0.46 -2.5 4,556,272 - DZA65_RS21075 0.64 -0.3 4,556,310 + DZA65_RS21075 0.68 -0.5 4,556,310 + DZA65_RS21075 0.68 -0.0 4,556,376 + DZA65_RS21075 0.75 -2.5 4,556,776 - -0.6 4,556,776 - -0.4 4,556,795 - -0.8 4,556,795 - -0.6 4,556,795 - -0.3 4,556,795 - -0.3 4,556,802 - +0.3 4,556,807 - -2.3 4,556,874 - +1.0 4,556,915 + +0.5 4,556,915 + -0.2 4,556,915 + +1.0 4,556,915 + -0.1 4,556,915 + +1.6 4,556,916 - -0.9 4,556,916 - +2.3 4,556,916 - -1.3 4,556,932 + +0.0 4,556,933 - +0.5 4,556,933 - -0.6 4,556,985 + -0.9 4,556,985 + -1.6 4,556,986 - +0.7 4,556,987 + -0.8 4,556,987 + -0.4 4,556,987 + -0.7 4,556,988 - +0.3 4,556,988 - -0.1 4,556,988 - +0.8 4,556,988 - -0.0 4,556,988 - -1.0 4,557,007 - +1.0 4,557,085 + +0.2 4,557,085 + +0.1 4,557,086 - -0.4 4,557,086 - +0.4 4,557,086 - -0.6 4,557,136 + +0.4 4,557,136 + +1.0 4,557,136 + -1.0 4,557,136 + -0.5 4,557,136 + +0.1 4,557,136 + -1.6 4,557,136 + +2.0 4,557,136 + -1.1 4,557,136 + +1.4 4,557,136 + -1.0 4,557,137 - +0.5 4,557,137 - -1.0 4,557,137 - +0.1 4,557,137 - -0.3 4,557,137 - -0.8 4,557,137 - -1.3 4,557,138 + +1.0 4,557,139 - -0.5 4,557,139 - +0.4 4,557,139 - +1.6 4,557,215 + DZA65_RS21080 0.11 -0.0 4,557,215 + DZA65_RS21080 0.11 -1.3 4,557,216 - +2.3 4,557,270 + DZA65_RS21080 0.13 -2.2 4,557,270 + DZA65_RS21080 0.13 -2.3 4,557,271 - DZA65_RS21080 0.13 +0.5 4,557,307 - DZA65_RS21080 0.15 -1.5 4,557,586 - DZA65_RS21080 0.28 +0.7 4,557,586 - DZA65_RS21080 0.28 -0.6
Or see this region's nucleotide sequence