Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21040

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,549,041	+		DZA65_RS21030	0.88	-0.0
4,549,041	+		DZA65_RS21030	0.88	+1.0
4,549,041	+		DZA65_RS21030	0.88	+0.0
4,549,041	+		DZA65_RS21030	0.88	-1.1
4,549,042	-		DZA65_RS21030	0.88	-2.2
4,549,042	-		DZA65_RS21030	0.88	+0.3
4,549,042	-		DZA65_RS21030	0.88	-1.1
4,549,179	+				+1.4
4,549,180	-				-2.2
4,549,212	+				+1.1
4,549,233	+				-1.7
4,549,233	+				-0.0
4,549,233	+				-3.0
4,549,233	+				-0.4
4,549,234	-				-0.0
4,549,234	-				+1.0
4,549,234	-				-0.0
4,549,234	-				-1.2
4,549,234	-				+1.2
4,549,234	-				-0.5
4,549,234	-				-0.2
4,549,234	-				-1.7
4,549,234	-				+0.6
4,549,235	+				+0.6
4,549,235	+				-1.6
4,549,269	-				-0.3
4,549,323	-				+0.3
4,549,323	-				-1.8
4,549,323	-				+1.5
4,549,323	-				-0.0
4,549,338	+				+0.7
4,549,338	+				-0.3
4,549,338	+				-1.6
4,549,338	+				-1.3
4,549,338	+				-0.5
4,549,338	+				+1.3
4,549,339	-				+1.3
4,549,339	-				-0.7
4,549,339	-				+1.0
4,549,516	+		DZA65_RS21035	0.35	+1.3
4,549,516	+		DZA65_RS21035	0.35	+2.6
4,549,541	+		DZA65_RS21035	0.39	+0.7
4,549,541	+		DZA65_RS21035	0.39	-0.5
4,549,542	-		DZA65_RS21035	0.39	-0.2
4,549,612	+		DZA65_RS21035	0.51	-0.3
4,549,705	+		DZA65_RS21035	0.66	-0.3
4,549,705	+		DZA65_RS21035	0.66	-0.7
4,549,705	+		DZA65_RS21035	0.66	-0.6
4,549,706	-		DZA65_RS21035	0.66	+1.0
4,549,708	+		DZA65_RS21035	0.66	-0.3
4,549,736	+		DZA65_RS21035	0.71	+0.2
4,549,736	+		DZA65_RS21035	0.71	+1.0
4,549,736	+		DZA65_RS21035	0.71	-1.0
4,549,737	-		DZA65_RS21035	0.71	+0.6
4,549,737	-		DZA65_RS21035	0.71	-1.3
4,549,737	-		DZA65_RS21035	0.71	-0.1
4,549,737	-		DZA65_RS21035	0.71	-1.2
4,549,737	-		DZA65_RS21035	0.71	-2.0
4,549,791	-		DZA65_RS21035	0.79	+1.2
4,549,791	-		DZA65_RS21035	0.79	+0.1
4,549,851	+		DZA65_RS21035	0.89	+2.1
4,549,851	+		DZA65_RS21035	0.89	-0.3
4,549,851	+		DZA65_RS21035	0.89	+2.0
4,549,851	+		DZA65_RS21035	0.89	-0.0
4,549,852	-		DZA65_RS21035	0.89	-0.7
4,549,938	+				+1.6
4,549,938	+				+0.3
4,549,938	+				+0.7
4,549,938	+				+0.7
4,549,938	+				-0.3
4,549,938	+				-0.4
4,549,938	+				-1.1
4,549,938	+				+0.6
4,549,938	+				+0.3
4,549,938	+				+1.4
4,549,939	-				+2.2
4,549,939	-				+4.0
4,549,948	+				+1.1
4,549,948	+				+0.2
4,549,948	+				+0.2
4,549,948	+				-0.5
4,549,948	+				-0.1
4,549,948	+				-1.8
4,549,948	+				+1.5
4,549,948	+				+1.0
4,549,949	-				-0.0
4,549,950	+				-2.0
4,549,950	+				-0.0
4,549,950	+				+2.0
4,549,950	+				-1.0
4,549,950	+				-1.5
4,549,950	+				+0.6
4,549,950	+				-1.5
4,549,950	+				+1.2
4,549,950	+				+2.0
4,549,950	+				-0.0
4,549,950	+				-2.0
4,549,951	-				+0.1
4,549,951	-				-0.0
4,549,951	-				+1.0
4,549,951	-				+1.5
4,549,951	-				-0.0
4,549,951	-				+0.6
4,549,951	-				+2.0
4,549,951	-				-1.3
4,549,951	-				+1.3
4,550,008	+				+0.9
4,550,008	+				+0.1
4,550,009	-				-0.3
4,550,009	-				+1.9
4,550,014	-				-0.2
4,550,014	-				+0.4
4,550,025	+				+0.8
4,550,270	+		DZA65_RS21040	0.37	-0.0
4,550,270	+		DZA65_RS21040	0.37	-0.2
4,550,270	+		DZA65_RS21040	0.37	-0.0
4,550,270	+		DZA65_RS21040	0.37	-0.2
4,550,270	+		DZA65_RS21040	0.37	+0.6
4,550,270	+		DZA65_RS21040	0.37	-0.2
4,550,271	-		DZA65_RS21040	0.37	-0.7
4,550,271	-		DZA65_RS21040	0.37	-0.3
4,550,271	-		DZA65_RS21040	0.37	+0.8
4,550,379	+		DZA65_RS21040	0.54	-0.3
4,550,380	-				+2.6
4,550,380	-		DZA65_RS21040	0.54	-2.2
4,550,423	+		DZA65_RS21040	0.61	-0.4
4,550,423	+		DZA65_RS21040	0.61	+0.4
4,550,423	+		DZA65_RS21040	0.61	-1.5
4,550,424	-		DZA65_RS21040	0.61	-0.5
4,550,424	-		DZA65_RS21040	0.61	-0.8
4,550,424	-		DZA65_RS21040	0.61	-0.6
4,550,424	-		DZA65_RS21040	0.61	-0.0
4,550,424	-		DZA65_RS21040	0.61	-0.0
4,550,476	+		DZA65_RS21040	0.70	-1.2
4,550,485	+		DZA65_RS21040	0.71	-0.1
4,550,485	+		DZA65_RS21040	0.71	-0.6
4,550,529	+		DZA65_RS21040	0.78	-0.7
4,550,530	-		DZA65_RS21040	0.78	-0.7
4,550,530	-		DZA65_RS21040	0.78	-1.6
4,550,711	+				+0.1
4,550,711	+				-1.6
4,550,712	-				+1.5
4,550,712	-				-1.8
4,550,712	-				+0.5
4,550,740	+				-0.6
4,550,740	+				+0.4
4,550,740	+				-2.5
4,550,741	-				+0.1
4,550,741	-				-1.0
4,550,741	-				+1.4
4,550,741	-				-0.4
4,550,741	-				-0.0
4,550,741	-				+0.7
4,550,741	-				+1.0
4,550,741	-				-0.3
4,550,783	+				+0.4
4,550,783	+				+0.6
4,550,784	-				-0.4
4,550,895	-				-0.5
4,550,905	+				-1.4
4,550,905	+				+0.4
4,550,905	+				+0.4
4,550,940	-		DZA65_RS21045	0.11	+0.3
4,550,940	-		DZA65_RS21045	0.11	-0.5
4,550,970	-		DZA65_RS21045	0.12	-1.3
4,550,970	-		DZA65_RS21045	0.12	-1.2
4,550,970	-		DZA65_RS21045	0.12	+0.8
4,550,977	+		DZA65_RS21045	0.13	-0.2
4,550,977	+		DZA65_RS21045	0.13	+0.5
4,550,981	+		DZA65_RS21045	0.13	+0.4
4,550,989	+		DZA65_RS21045	0.13	+1.2
4,551,182	+		DZA65_RS21045	0.24	-2.2
4,551,182	+		DZA65_RS21045	0.24	-0.4
4,551,182	+		DZA65_RS21045	0.24	-0.6
4,551,183	-		DZA65_RS21045	0.24	+0.4
4,551,183	-		DZA65_RS21045	0.24	+0.8
4,551,183	-		DZA65_RS21045	0.24	-0.2
4,551,200	-		DZA65_RS21045	0.25	-0.9
4,551,200	-		DZA65_RS21045	0.25	-1.0
4,551,271	+		DZA65_RS21045	0.29	+0.6
4,551,271	+		DZA65_RS21045	0.29	+0.5
4,551,271	+		DZA65_RS21045	0.29	-1.3
4,551,272	-		DZA65_RS21045	0.29	+0.7
4,551,272	-		DZA65_RS21045	0.29	-0.7
4,551,344	-		DZA65_RS21045	0.33	-1.7
4,551,409	+		DZA65_RS21045	0.36	-1.0
4,551,409	+		DZA65_RS21045	0.36	-0.4
4,551,410	-		DZA65_RS21045	0.37	-0.4
4,551,410	-		DZA65_RS21045	0.37	-0.6
4,551,410	-		DZA65_RS21045	0.37	-2.2
4,551,410	-		DZA65_RS21045	0.37	-0.4
4,551,410	-		DZA65_RS21045	0.37	-0.3
4,551,410	-		DZA65_RS21045	0.37	+0.4
4,551,553	+		DZA65_RS21045	0.44	-2.5
4,551,553	+		DZA65_RS21045	0.44	-1.3
4,551,553	+		DZA65_RS21045	0.44	-1.2
4,551,610	+		DZA65_RS21045	0.47	+0.4
4,551,610	+		DZA65_RS21045	0.47	-0.3
4,551,610	+		DZA65_RS21045	0.47	-0.1
4,551,611	-		DZA65_RS21045	0.47	-2.0
4,551,613	+		DZA65_RS21045	0.48	+1.5
4,551,613	+		DZA65_RS21045	0.48	+2.1
4,551,614	-		DZA65_RS21045	0.48	+1.4
4,551,614	-		DZA65_RS21045	0.48	+0.6
4,551,614	-		DZA65_RS21045	0.48	-1.6
4,551,614	-		DZA65_RS21045	0.48	-0.2
4,551,614	-		DZA65_RS21045	0.48	-0.3
4,551,614	-		DZA65_RS21045	0.48	+0.8
4,551,614	-		DZA65_RS21045	0.48	+1.0
4,551,614	-		DZA65_RS21045	0.48	+0.8
4,551,614	-		DZA65_RS21045	0.48	-2.0
4,551,623	+		DZA65_RS21045	0.48	+0.2
4,551,663	-		DZA65_RS21045	0.50	-1.2
4,551,663	-		DZA65_RS21045	0.50	-0.9
4,551,663	-		DZA65_RS21045	0.50	-0.4
4,551,663	-		DZA65_RS21045	0.50	-0.6
4,551,663	-		DZA65_RS21045	0.50	-1.6
4,551,663	-		DZA65_RS21045	0.50	-0.2
4,551,663	-		DZA65_RS21045	0.50	+0.6