Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20805

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,487,943	-				-1.3
4,488,126	+		DZA65_RS20800	0.34	+0.9
4,488,126	+		DZA65_RS20800	0.34	+2.1
4,488,127	-		DZA65_RS20800	0.34	-0.5
4,488,127	-		DZA65_RS20800	0.34	+0.2
4,488,247	+		DZA65_RS20800	0.55	-0.5
4,488,248	-		DZA65_RS20800	0.56	-2.1
4,488,248	-		DZA65_RS20800	0.56	+0.7
4,488,248	-		DZA65_RS20800	0.56	+1.2
4,488,248	-		DZA65_RS20800	0.56	-0.1
4,488,275	+		DZA65_RS20800	0.61	+0.1
4,488,276	-		DZA65_RS20800	0.61	-3.3
4,488,296	+		DZA65_RS20800	0.64	-0.6
4,488,369	+		DZA65_RS20800	0.78	+1.9
4,488,369	+		DZA65_RS20800	0.78	+0.6
4,488,369	+		DZA65_RS20800	0.78	-1.4
4,488,369	+		DZA65_RS20800	0.78	-0.5
4,488,369	+		DZA65_RS20800	0.78	+0.3
4,488,369	+		DZA65_RS20800	0.78	-1.1
4,488,370	-		DZA65_RS20800	0.78	+0.8
4,488,370	-		DZA65_RS20800	0.78	-1.6
4,488,370	-				+3.5
4,488,370	-		DZA65_RS20800	0.78	+0.6
4,488,370	-		DZA65_RS20800	0.78	-0.6
4,488,370	-		DZA65_RS20800	0.78	-0.2
4,488,370	-		DZA65_RS20800	0.78	-0.4
4,488,370	-		DZA65_RS20800	0.78	+0.4
4,488,377	+		DZA65_RS20800	0.79	+1.2
4,488,378	-		DZA65_RS20800	0.79	+0.9
4,488,399	+		DZA65_RS20800	0.83	-1.4
4,488,400	-		DZA65_RS20800	0.83	+0.4
4,488,400	-		DZA65_RS20800	0.83	+0.5
4,488,400	-		DZA65_RS20800	0.83	+0.5
4,488,400	-		DZA65_RS20800	0.83	-0.8
4,488,483	+				+0.1
4,488,483	+				+0.4
4,488,484	-				-0.8
4,488,486	+				-0.5
4,488,486	+				+1.1
4,488,486	+				-0.3
4,488,487	-				+0.4
4,488,487	-				+2.4
4,488,487	-				-0.5
4,488,487	-				+0.7
4,488,487	-				+0.2
4,488,487	-				-0.6
4,488,502	+				+0.7
4,488,502	+				-1.2
4,488,502	+				+0.1
4,488,503	-				+1.3
4,488,503	-				+0.5
4,488,503	-				+0.3
4,488,503	-				-1.4
4,488,503	-				-1.5
4,488,504	+				-0.6
4,488,524	+				-0.8
4,488,525	-				-0.9
4,488,525	-				-0.1
4,488,525	-				+0.8
4,488,525	-				-0.8
4,488,582	-				-0.2
4,488,588	+				+0.1
4,488,589	-				-2.1
4,488,589	-				-2.1
4,488,589	-				-2.2
4,488,589	-				+0.9
4,488,613	-				-0.8
4,488,618	+				-0.6
4,488,618	+				-0.1
4,488,619	-				-0.4
4,488,636	+				+1.8
4,488,636	+				-0.1
4,488,637	-				+0.6
4,488,651	-				+3.3
4,488,670	+				-0.4
4,488,670	+				+0.3
4,488,672	-				+0.5
4,488,697	+				-0.1
4,488,698	-				+1.1
4,488,704	+				+0.9
4,488,705	-				-1.2
4,488,705	-				-1.9
4,488,705	-				+0.6
4,488,705	-				+1.1
4,488,730	-				-0.4
4,488,781	+				-0.1
4,488,781	+				+0.1
4,488,781	+				-2.2
4,488,782	-				-1.6
4,488,782	-				+0.7
4,488,783	+				+0.9
4,488,783	+				-0.4
4,488,784	-				+0.9
4,488,791	+				-1.0
4,488,791	+				+0.5
4,488,800	-				+0.0
4,488,800	-				-0.6
4,488,800	-				-2.9
4,488,800	-				-1.9
4,488,802	+				-0.9
4,488,831	+				-1.6
4,488,854	+				+0.4
4,488,863	+				-0.4
4,488,866	+				+0.3
4,488,909	+				-1.8
4,488,909	+				-1.4
4,488,912	+				-1.9
4,488,912	+				-1.4
4,488,923	+				-1.9
4,488,923	+				-1.3
4,488,923	+				-0.1
4,488,927	+				-0.1
4,488,927	+				-0.4
4,488,941	+				-2.4
4,488,941	+				-0.4
4,489,884	-		DZA65_RS20805	0.46	-3.0
4,490,585	-		DZA65_RS20805	0.78	-0.8
4,490,987	-				-1.4
4,491,034	+				-0.6
4,491,034	+				-0.5
4,491,035	-				+0.6
4,491,035	-				-0.2
4,491,035	-				-0.2
4,491,035	-				+0.6
4,491,043	+				+1.1
4,491,043	+				+1.5
4,491,044	-				-1.6
4,491,044	-				+0.7
4,491,044	-				+0.4
4,491,044	-				+0.4
4,491,044	-				+0.0
4,491,044	-				+0.5
4,491,044	-				+0.4
4,491,044	-				-0.5
4,491,044	-				-0.5
4,491,045	+				-1.1
4,491,045	+				+0.4
4,491,045	+				+0.2
4,491,045	+				+1.1
4,491,045	+				-0.4
4,491,045	+				-2.8
4,491,045	+				-0.7
4,491,045	+				+0.9
4,491,045	+				+0.5
4,491,046	-				+0.5
4,491,046	-				-0.8
4,491,046	-				-1.0
4,491,046	-				-0.6
4,491,046	-				-0.3
4,491,046	-				-1.9
4,491,046	-				+0.9
4,491,046	-				-0.1
4,491,046	-				-1.1
4,491,046	-				-0.1
4,491,046	-				-1.2
4,491,046	-				-0.3
4,491,046	-				-0.9
4,491,084	-				-1.4
4,491,098	+				-2.1
4,491,099	-				+0.3
4,491,167	-				-0.4
4,491,171	+				-1.3
4,491,171	+				-1.6
4,491,171	+				-0.6
4,491,171	+				+0.8
4,491,171	+				+1.3
4,491,172	-				+0.9
4,491,172	-				-0.6
4,491,172	-				-0.7
4,491,172	-				+0.5
4,491,172	-				-0.1
4,491,172	-				-1.3
4,491,179	+				+0.0
4,491,180	-				-0.1
4,491,180	-				+0.9
4,491,222	+				+0.5
4,491,222	+				+0.6
4,491,222	+				+0.1
4,491,222	+				-1.4
4,491,222	+				-1.5
4,491,222	+				+1.5
4,491,223	-				+1.3
4,491,223	-				-0.5
4,491,223	-				+1.7
4,491,223	-				-1.4
4,491,223	-				-1.3
4,491,223	-				+0.8
4,491,223	-				+0.1
4,491,223	-				+0.5
4,491,223	-				-0.5
4,491,223	-				-2.2
4,491,271	+				+0.6
4,491,323	+		DZA65_RS20810	0.12	+0.1
4,491,323	+		DZA65_RS20810	0.12	-0.3
4,491,323	+		DZA65_RS20810	0.12	-0.9
4,491,323	+		DZA65_RS20810	0.12	+0.4
4,491,323	+		DZA65_RS20810	0.12	-0.3
4,491,324	-		DZA65_RS20810	0.12	+0.1
4,491,324	-		DZA65_RS20810	0.12	-0.1
4,491,324	-		DZA65_RS20810	0.12	+0.2
4,491,324	-		DZA65_RS20810	0.12	+0.9
4,491,367	+		DZA65_RS20810	0.18	+0.2
4,491,367	+		DZA65_RS20810	0.18	-1.9
4,491,367	+		DZA65_RS20810	0.18	-0.5
4,491,368	-		DZA65_RS20810	0.18	+1.1
4,491,368	-		DZA65_RS20810	0.18	-1.4
4,491,368	-		DZA65_RS20810	0.18	+0.1
4,491,410	+		DZA65_RS20810	0.24	-1.2
4,491,427	+		DZA65_RS20810	0.27	-0.0
4,491,441	-		DZA65_RS20810	0.29	+1.3
4,491,441	-		DZA65_RS20810	0.29	-0.7
4,491,453	-		DZA65_RS20810	0.30	-0.9
4,491,478	+		DZA65_RS20810	0.34	-1.1
4,491,478	+		DZA65_RS20810	0.34	+0.7
4,491,479	-		DZA65_RS20810	0.34	+0.6
4,491,482	+		DZA65_RS20810	0.34	+0.4
4,491,482	+				+1.8
4,491,483	-		DZA65_RS20810	0.35	+2.8
4,491,483	-		DZA65_RS20810	0.35	-2.2
4,491,530	-		DZA65_RS20810	0.41	-0.5
4,491,574	+		DZA65_RS20810	0.48	-1.1
4,491,574	+		DZA65_RS20810	0.48	+0.4
4,491,575	-		DZA65_RS20810	0.48	+1.2
4,491,575	-		DZA65_RS20810	0.48	-2.9
4,491,575	-		DZA65_RS20810	0.48	+2.2
4,491,580	-		DZA65_RS20810	0.48	-0.6
4,491,580	-		DZA65_RS20810	0.48	-2.4
4,491,618	+		DZA65_RS20810	0.54	+0.6
4,491,618	+		DZA65_RS20810	0.54	-1.9
4,491,618	+		DZA65_RS20810	0.54	-0.4
4,491,619	-		DZA65_RS20810	0.54	+0.7
4,491,651	+		DZA65_RS20810	0.58	+0.2
4,491,652	-		DZA65_RS20810	0.59	-1.2
4,491,652	-		DZA65_RS20810	0.59	-1.2
4,491,667	+		DZA65_RS20810	0.61	+0.4
4,491,667	+		DZA65_RS20810	0.61	-0.8
4,491,667	+		DZA65_RS20810	0.61	+0.5
4,491,667	+		DZA65_RS20810	0.61	+0.6
4,491,667	+		DZA65_RS20810	0.61	-1.6
4,491,667	+		DZA65_RS20810	0.61	-1.1
4,491,667	+		DZA65_RS20810	0.61	-0.1
4,491,667	+		DZA65_RS20810	0.61	+0.1
4,491,667	+		DZA65_RS20810	0.61	-0.1
4,491,667	+		DZA65_RS20810	0.61	-0.8
4,491,667	+		DZA65_RS20810	0.61	+0.1
4,491,668	-		DZA65_RS20810	0.61	-0.5
4,491,668	-		DZA65_RS20810	0.61	-1.0
4,491,668	-		DZA65_RS20810	0.61	+1.3
4,491,668	-		DZA65_RS20810	0.61	-2.2
4,491,668	-		DZA65_RS20810	0.61	-0.1
4,491,668	-		DZA65_RS20810	0.61	+0.6
4,491,668	-		DZA65_RS20810	0.61	-0.6
4,491,668	-		DZA65_RS20810	0.61	-1.0
4,491,668	-		DZA65_RS20810	0.61	+0.9
4,491,668	-		DZA65_RS20810	0.61	-1.9
4,491,671	+		DZA65_RS20810	0.61	+1.7
4,491,671	+		DZA65_RS20810	0.61	+0.4
4,491,671	+		DZA65_RS20810	0.61	+0.9
4,491,671	+		DZA65_RS20810	0.61	-0.7
4,491,671	+		DZA65_RS20810	0.61	-2.4
4,491,671	+		DZA65_RS20810	0.61	+1.6
4,491,671	+		DZA65_RS20810	0.61	+1.3
4,491,671	+		DZA65_RS20810	0.61	+1.5
4,491,671	+		DZA65_RS20810	0.61	-1.1
4,491,671	+		DZA65_RS20810	0.61	+0.9
4,491,671	+		DZA65_RS20810	0.61	-0.6
4,491,672	-		DZA65_RS20810	0.61	-1.2
4,491,672	-		DZA65_RS20810	0.61	+2.2
4,491,672	-		DZA65_RS20810	0.61	-0.5
4,491,672	-		DZA65_RS20810	0.61	-0.8
4,491,672	-		DZA65_RS20810	0.61	+1.5
4,491,672	-		DZA65_RS20810	0.61	-1.2
4,491,672	-		DZA65_RS20810	0.61	+1.5
4,491,672	-		DZA65_RS20810	0.61	+1.7
4,491,672	-		DZA65_RS20810	0.61	+1.5
4,491,672	-		DZA65_RS20810	0.61	-1.1
4,491,672	-		DZA65_RS20810	0.61	+0.9
4,491,672	-		DZA65_RS20810	0.61	+0.4
4,491,672	-		DZA65_RS20810	0.61	-0.1
4,491,731	-		DZA65_RS20810	0.70	+1.4
4,491,742	+		DZA65_RS20810	0.71	-1.0
4,491,771	+		DZA65_RS20810	0.75	-0.4
4,491,803	+		DZA65_RS20810	0.80	+0.3
4,491,881	+				-0.2
4,491,935	+				-1.6
4,491,935	+				-2.0
4,491,935	+				+0.7
4,491,935	+				+0.0
4,491,935	+				-0.6
4,491,935	+				-1.9
4,491,935	+				-0.6
4,491,936	-				+0.3
4,491,936	-				-2.5
4,491,936	-				+1.2
4,491,936	-				-0.8
4,491,936	-				-0.8
4,491,936	-				-0.4
4,491,936	-				-0.9
4,491,936	-				-0.3
4,491,936	-				-1.6
4,491,936	-				+0.7
4,492,012	+		DZA65_RS20815	0.17	+1.4