Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20665

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,455,744	+				-0.1
4,455,745	-				-0.2
4,455,745	-				+0.3
4,455,758	+				-1.1
4,455,758	+				+1.0
4,455,758	+				+0.8
4,455,758	+				+1.0
4,455,759	-				-0.4
4,455,759	-				+0.9
4,455,759	-				+0.9
4,455,768	+				-1.1
4,455,768	+				-0.4
4,455,768	+				-0.9
4,455,768	+				-1.2
4,455,768	+				-1.7
4,455,768	+				-0.2
4,455,768	+				+1.8
4,455,768	+				-0.1
4,455,769	-				+0.2
4,455,769	-				-0.4
4,455,769	-				-0.8
4,455,769	-				+1.4
4,455,769	-				-0.9
4,455,772	+				-0.4
4,455,772	+				-0.2
4,455,772	+				+0.1
4,455,772	+				-0.0
4,455,772	+				-0.8
4,455,773	-				+0.3
4,455,782	+				-0.8
4,455,782	+				-1.8
4,455,782	+				-0.6
4,455,783	-				-0.8
4,455,846	+				+1.5
4,455,847	-				-1.5
4,455,859	+				-0.1
4,455,860	-				+0.5
4,455,928	-				+0.8
4,455,929	+				+1.2
4,456,279	+		DZA65_RS20660	0.61	+0.1
4,456,339	+		DZA65_RS20660	0.72	-0.8
4,456,376	+		DZA65_RS20660	0.78	+0.8
4,456,411	+		DZA65_RS20660	0.84	+0.9
4,456,412	-		DZA65_RS20660	0.84	-0.4
4,456,449	+				-0.8
4,456,450	-				+0.1
4,456,455	+				-1.1
4,456,455	+				-0.4
4,456,455	+				+1.2
4,456,456	-				+0.2
4,456,464	+				-0.1
4,456,464	+				+1.2
4,456,464	+				+0.1
4,456,464	+				+0.3
4,456,465	-				-1.6
4,456,465	-				-1.5
4,456,465	-				-2.1
4,456,465	-				+1.1
4,456,465	-				-0.3
4,456,465	-				+0.7
4,456,465	-				+0.2
4,456,465	-				+0.6
4,456,465	-				-0.9
4,456,468	+				-1.3
4,456,468	+				-0.1
4,456,469	-				+2.1
4,456,469	-				+0.9
4,456,469	-				+0.2
4,456,469	-				-1.7
4,456,479	+				-0.2
4,456,479	+				-0.7
4,456,479	+				+1.9
4,456,479	+				-0.3
4,456,479	+				-1.0
4,456,479	+				-1.4
4,456,479	+				+0.4
4,456,479	+				+0.1
4,456,480	-				+0.4
4,456,480	-				+1.2
4,456,480	-				+1.2
4,456,480	-				+1.2
4,456,480	-				-1.1
4,456,480	-				+0.1
4,456,480	-				-0.9
4,456,480	-				+0.5
4,456,480	-				-1.1
4,456,490	-				-0.8
4,456,493	+				-1.7
4,456,493	+				+0.9
4,456,493	+				+0.7
4,456,493	+				+0.1
4,456,494	-				-0.2
4,456,494	-				-1.1
4,456,494	-				-1.1
4,456,501	+				-0.2
4,456,501	+				-3.2
4,456,501	+				-1.4
4,456,501	+				-1.7
4,456,501	+				+0.8
4,456,501	+				+0.1
4,456,501	+				+1.1
4,456,501	+				-0.2
4,456,501	+				+0.3
4,456,501	+				+0.1
4,456,502	-				-1.4
4,456,502	-				+0.0
4,456,502	-				+0.3
4,456,502	-				-0.4
4,456,502	-				+0.5
4,456,502	-				-0.4
4,456,502	-				+0.4
4,456,507	+				+0.1
4,456,507	+				-0.7
4,456,508	-				-0.8
4,456,508	-				-1.9
4,456,508	-				+0.1
4,456,508	-				+1.9
4,456,511	+				-1.1
4,456,511	+				-0.1
4,456,511	+				+0.5
4,456,511	+				-0.1
4,456,512	-				-0.5
4,456,512	-				-0.9
4,456,512	-				+0.3
4,456,512	-				+0.9
4,456,551	+				+1.1
4,456,551	+				-0.7
4,456,551	+				-1.7
4,456,551	+				-0.7
4,456,551	+				+0.8
4,456,551	+				-0.7
4,456,552	-				+1.6
4,456,552	-				-1.3
4,456,552	-				-0.4
4,456,555	+				-1.9
4,456,555	+				-0.3
4,456,555	+				-1.7
4,456,555	+				-0.5
4,456,555	+				+0.3
4,456,555	+				-3.3
4,456,555	+				+0.3
4,456,555	+				+0.2
4,456,555	+				+0.4
4,456,556	-				+0.9
4,456,556	-				-0.3
4,456,647	+				-0.9
4,456,647	+				+0.1
4,456,647	+				+0.9
4,456,647	+				+1.2
4,456,648	-				+0.3
4,456,716	+				+0.2
4,456,794	+				+0.2
4,456,795	-				+0.6
4,456,803	+				-0.2
4,456,804	-				+0.1
4,456,804	-				-1.8
4,456,805	+				-0.7
4,456,805	+				+1.8
4,456,806	-				-0.7
4,456,806	-				+0.7
4,456,806	-				-1.5
4,456,806	-				-0.9
4,456,859	+		DZA65_RS20665	0.10	-2.8
4,456,859	+		DZA65_RS20665	0.10	-1.4
4,456,859	+		DZA65_RS20665	0.10	-0.4
4,456,859	+		DZA65_RS20665	0.10	+0.9
4,456,860	-		DZA65_RS20665	0.10	+1.3
4,456,869	+		DZA65_RS20665	0.11	+2.1
4,456,870	-		DZA65_RS20665	0.11	-0.9
4,456,911	-		DZA65_RS20665	0.15	-1.4
4,456,911	-		DZA65_RS20665	0.15	+0.1
4,456,911	-		DZA65_RS20665	0.15	-1.9
4,456,911	-		DZA65_RS20665	0.15	-1.4
4,456,941	+		DZA65_RS20665	0.17	+0.3
4,456,941	+		DZA65_RS20665	0.17	-0.1
4,456,941	+		DZA65_RS20665	0.17	-0.4
4,456,942	-		DZA65_RS20665	0.17	-1.1
4,456,973	+		DZA65_RS20665	0.20	+0.1
4,456,973	+		DZA65_RS20665	0.20	+1.3
4,456,973	+		DZA65_RS20665	0.20	+0.9
4,456,973	+		DZA65_RS20665	0.20	-0.0
4,456,973	+		DZA65_RS20665	0.20	-1.4
4,456,973	+		DZA65_RS20665	0.20	-0.9
4,456,974	-		DZA65_RS20665	0.20	+0.6
4,456,974	-		DZA65_RS20665	0.20	+0.3
4,456,974	-		DZA65_RS20665	0.20	+1.5
4,456,974	-				-1.4
4,456,974	-		DZA65_RS20665	0.20	-1.1
4,457,054	+		DZA65_RS20665	0.26	-0.1
4,457,054	+		DZA65_RS20665	0.26	+2.9
4,457,055	-		DZA65_RS20665	0.27	-1.1
4,457,055	-		DZA65_RS20665	0.27	-1.1
4,457,139	+		DZA65_RS20665	0.33	+0.9
4,457,221	+		DZA65_RS20665	0.40	+1.2
4,457,221	+		DZA65_RS20665	0.40	-1.2
4,457,222	-		DZA65_RS20665	0.40	-1.8
4,457,222	-		DZA65_RS20665	0.40	+0.2
4,457,297	+		DZA65_RS20665	0.47	-1.6
4,457,298	-		DZA65_RS20665	0.47	-2.7
4,457,354	+		DZA65_RS20665	0.51	+0.2
4,457,354	+		DZA65_RS20665	0.51	-2.8
4,457,354	+		DZA65_RS20665	0.51	+0.5
4,457,355	-		DZA65_RS20665	0.51	-1.1
4,457,592	+				+0.2
4,457,592	+		DZA65_RS20665	0.71	-0.5
4,457,593	-		DZA65_RS20665	0.71	-0.3
4,457,593	-		DZA65_RS20665	0.71	+0.5
4,457,593	-		DZA65_RS20665	0.71	+0.2
4,457,593	-		DZA65_RS20665	0.71	-0.5
4,457,607	+		DZA65_RS20665	0.72	-0.1
4,457,607	+		DZA65_RS20665	0.72	+0.7
4,457,607	+		DZA65_RS20665	0.72	+2.9
4,457,608	-		DZA65_RS20665	0.72	+1.1
4,457,686	+		DZA65_RS20665	0.79	+0.6
4,457,686	+		DZA65_RS20665	0.79	-0.1
4,457,686	+		DZA65_RS20665	0.79	+0.2
4,457,686	+		DZA65_RS20665	0.79	-0.2
4,457,686	+		DZA65_RS20665	0.79	-0.1
4,457,687	-		DZA65_RS20665	0.79	-1.2
4,457,687	-		DZA65_RS20665	0.79	-1.9
4,457,687	-		DZA65_RS20665	0.79	+0.3
4,457,696	+		DZA65_RS20665	0.80	-2.8
4,457,696	+		DZA65_RS20665	0.80	+1.1
4,457,696	+		DZA65_RS20665	0.80	-0.1
4,457,697	-		DZA65_RS20665	0.80	-0.3
4,457,697	-		DZA65_RS20665	0.80	+0.7
4,457,697	-		DZA65_RS20665	0.80	+0.9
4,457,697	-		DZA65_RS20665	0.80	+0.5
4,457,697	-		DZA65_RS20665	0.80	+0.2
4,457,697	-		DZA65_RS20665	0.80	-0.9
4,457,731	-		DZA65_RS20665	0.83	-0.7
4,457,732	+		DZA65_RS20665	0.83	-0.2
4,457,732	+		DZA65_RS20665	0.83	-0.4
4,457,732	+		DZA65_RS20665	0.83	+0.9
4,457,733	-		DZA65_RS20665	0.83	-0.0
4,457,733	-		DZA65_RS20665	0.83	+2.4
4,457,853	+				-0.4
4,457,853	+				+0.7
4,457,901	+				-1.3
4,457,902	-				-0.3
4,457,921	-				-0.5
4,457,921	-				-0.1
4,457,921	-				+0.4
4,457,925	+				+0.9
4,457,970	+				-1.1
4,457,995	+				+0.9
4,458,435	+		DZA65_RS20670	0.12	-0.2
4,458,449	+		DZA65_RS20670	0.17	+1.7
4,458,493	-		DZA65_RS20670	0.31	-0.5
4,458,496	+		DZA65_RS20670	0.31	+1.0
4,458,554	+		DZA65_RS20670	0.50	+0.6
4,458,663	+		DZA65_RS20670	0.84	+0.4
4,458,727	+				-0.7
4,458,727	+				+0.3
4,458,727	+				-0.7
4,458,727	+				+0.9
4,458,728	-				+0.2
4,458,728	-				+0.3
4,458,728	-				-1.2
4,458,777	+				-0.4
4,458,810	-				+1.1
4,458,814	-				-0.7
4,458,852	+				-0.5
4,458,860	-				+1.0
4,458,864	-				+0.4
4,458,864	-				-1.1
4,458,870	+				+1.9
4,458,871	-				+0.7
4,458,888	+				-0.4
4,458,916	+				-0.1
4,458,927	-				-0.1
4,458,938	+				+0.3
4,458,939	-				-0.3