Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19810

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,286,726	+				+0.2
4,286,792	+				-0.8
4,286,792	+				+0.7
4,286,831	+				-0.4
4,286,832	-				+0.4
4,286,832	-				-1.6
4,286,850	+				+0.5
4,286,850	+				+0.2
4,286,850	+				-1.0
4,286,850	+				-1.5
4,286,851	-				-1.6
4,286,851	-				+0.6
4,286,851	-				+0.9
4,286,851	-				-0.4
4,286,856	+				-0.7
4,286,856	+				-0.8
4,286,856	+				+0.4
4,286,856	+				+1.6
4,286,856	+				-0.2
4,286,856	+				+0.0
4,286,856	+				-0.9
4,286,856	+				-0.0
4,286,856	+				+0.4
4,286,856	+				-2.0
4,286,857	-				+3.7
4,286,857	-				-0.2
4,286,857	-				+0.9
4,286,857	-				-0.8
4,286,857	-				-0.7
4,286,857	-				+1.3
4,286,857	-				-0.4
4,286,857	-				+0.1
4,286,857	-				-1.1
4,286,857	-				-0.3
4,286,857	-				+0.4
4,286,857	-				-1.1
4,286,857	-				+0.3
4,286,857	-				-0.7
4,286,857	-				+2.6
4,286,858	+				-1.7
4,286,858	+				+1.3
4,286,858	+				+1.9
4,286,858	+				+1.3
4,286,858	+				-0.5
4,286,858	+				-2.1
4,286,858	+				+1.9
4,286,858	+				-0.5
4,286,858	+				+0.2
4,286,858	+				+0.6
4,286,858	+				-0.5
4,286,858	+				-0.1
4,286,858	+				+1.3
4,286,858	+				+0.3
4,286,858	+				-0.3
4,286,859	-				-0.7
4,286,859	-				-1.4
4,286,859	-				-0.4
4,286,859	-				+0.9
4,286,859	-				+0.1
4,286,859	-				-0.3
4,286,859	-				+1.7
4,286,859	-				-0.9
4,286,859	-				-2.2
4,286,859	-				+0.7
4,286,871	+				+0.6
4,286,871	+				+0.9
4,286,871	+				+1.2
4,286,871	+				-0.1
4,286,871	+				-2.1
4,286,871	+				-1.9
4,286,871	+				-0.4
4,286,871	+				-0.7
4,286,871	+				-0.4
4,286,872	-				-1.1
4,286,872	-				+0.3
4,286,872	-				-0.3
4,286,872	-				-0.8
4,286,872	-				+0.3
4,286,872	-				+0.3
4,286,872	-				+0.2
4,286,872	-				-0.5
4,286,872	-				-0.2
4,286,872	-				-0.0
4,286,872	-				-1.9
4,286,873	+				-1.1
4,286,873	+				-0.2
4,286,873	+				+1.6
4,286,874	-				+0.1
4,286,874	-				+0.7
4,286,886	+				-0.5
4,286,886	+				-1.7
4,286,887	-				+0.7
4,286,887	-				+0.7
4,286,888	+				-0.3
4,286,888	+				+0.8
4,286,888	+				+1.5
4,286,888	+				-1.1
4,286,888	+				-0.9
4,286,889	-				-1.6
4,286,889	-				+0.9
4,286,889	-				-0.4
4,286,901	+				+1.1
4,286,901	+				+1.2
4,286,901	+				-0.9
4,286,901	+				+0.0
4,286,901	+				+0.8
4,286,901	+				-0.5
4,286,902	-				-1.7
4,286,902	-				-0.7
4,286,902	-				-0.7
4,286,902	-				+0.1
4,286,902	-				-0.2
4,286,961	+				+1.5
4,286,961	+				-1.9
4,286,962	-				-0.4
4,286,962	-				-0.7
4,287,029	+		DZA65_RS19805	0.13	-2.4
4,287,030	-		DZA65_RS19805	0.13	-0.6
4,287,030	-		DZA65_RS19805	0.13	-1.4
4,287,030	-		DZA65_RS19805	0.13	-1.2
4,287,030	-		DZA65_RS19805	0.13	-0.2
4,287,141	+		DZA65_RS19805	0.28	+0.3
4,287,141	+		DZA65_RS19805	0.28	-2.1
4,287,141	+		DZA65_RS19805	0.28	-1.1
4,287,190	+		DZA65_RS19805	0.34	-0.1
4,287,190	+		DZA65_RS19805	0.34	-1.0
4,287,190	+		DZA65_RS19805	0.34	+1.2
4,287,190	+		DZA65_RS19805	0.34	-0.4
4,287,190	+		DZA65_RS19805	0.34	+1.6
4,287,190	+		DZA65_RS19805	0.34	-0.5
4,287,191	-		DZA65_RS19805	0.34	-0.1
4,287,191	-		DZA65_RS19805	0.34	+0.5
4,287,191	-		DZA65_RS19805	0.34	-1.3
4,287,191	-		DZA65_RS19805	0.34	+0.3
4,287,210	+		DZA65_RS19805	0.37	-0.9
4,287,210	+		DZA65_RS19805	0.37	-0.5
4,287,210	+		DZA65_RS19805	0.37	-0.5
4,287,210	+		DZA65_RS19805	0.37	+0.9
4,287,211	-		DZA65_RS19805	0.37	-0.7
4,287,254	+		DZA65_RS19805	0.42	-1.7
4,287,344	+		DZA65_RS19805	0.54	-0.7
4,287,350	+		DZA65_RS19805	0.55	-0.4
4,287,350	+		DZA65_RS19805	0.55	+2.0
4,287,351	-		DZA65_RS19805	0.55	-1.4
4,287,374	+		DZA65_RS19805	0.58	+0.1
4,287,374	+		DZA65_RS19805	0.58	+0.1
4,287,374	+		DZA65_RS19805	0.58	-1.8
4,287,374	+		DZA65_RS19805	0.58	-0.3
4,287,374	+		DZA65_RS19805	0.58	+0.3
4,287,374	+				+3.7
4,287,375	-		DZA65_RS19805	0.58	+0.5
4,287,375	-		DZA65_RS19805	0.58	+0.9
4,287,375	-		DZA65_RS19805	0.58	+1.9
4,287,410	+		DZA65_RS19805	0.63	-0.1
4,287,410	+		DZA65_RS19805	0.63	-1.4
4,287,410	+				+4.4
4,287,411	-		DZA65_RS19805	0.63	-0.3
4,287,411	-		DZA65_RS19805	0.63	-1.4
4,287,411	-		DZA65_RS19805	0.63	+0.1
4,287,411	-		DZA65_RS19805	0.63	+0.5
4,287,567	-		DZA65_RS19805	0.83	+0.3
4,287,620	+		DZA65_RS19805	0.90	+1.3
4,287,620	+		DZA65_RS19805	0.90	+0.7
4,287,620	+		DZA65_RS19805	0.90	-0.8
4,287,621	-		DZA65_RS19805	0.90	-2.3
4,287,626	+				-0.9
4,287,626	+				+0.0
4,287,626	+				-0.9
4,287,627	-				-1.2
4,287,646	-				-0.3
4,287,646	-				+0.7
4,287,705	+				-0.0
4,287,706	-				+0.7
4,287,711	+				-0.1
4,287,711	+				-0.4
4,287,712	-				+0.9
4,287,712	-				-0.3
4,287,714	-				-0.8
4,287,714	-				-2.6
4,287,827	-		DZA65_RS19810	0.12	+0.3
4,287,908	-		DZA65_RS19810	0.20	-2.3
4,287,951	-		DZA65_RS19810	0.24	-1.1
4,287,961	+		DZA65_RS19810	0.25	+1.5
4,287,962	-		DZA65_RS19810	0.26	+1.3
4,287,962	-		DZA65_RS19810	0.26	-0.9
4,287,962	-		DZA65_RS19810	0.26	+0.7
4,287,979	-		DZA65_RS19810	0.27	-1.1
4,288,008	-		DZA65_RS19810	0.30	+0.5
4,288,045	+		DZA65_RS19810	0.34	-0.3
4,288,055	-		DZA65_RS19810	0.35	-0.3
4,288,111	-		DZA65_RS19810	0.41	+0.1
4,288,127	-		DZA65_RS19810	0.42	+0.7
4,288,143	+		DZA65_RS19810	0.44	-3.3
4,288,143	+		DZA65_RS19810	0.44	+0.2
4,288,143	+		DZA65_RS19810	0.44	-0.3
4,288,143	+		DZA65_RS19810	0.44	-1.4
4,288,144	-		DZA65_RS19810	0.44	-0.5
4,288,144	-		DZA65_RS19810	0.44	-0.0
4,288,144	-		DZA65_RS19810	0.44	+0.5
4,288,144	-		DZA65_RS19810	0.44	-1.9
4,288,252	+		DZA65_RS19810	0.55	-1.1
4,288,252	+		DZA65_RS19810	0.55	+1.5
4,288,252	+		DZA65_RS19810	0.55	+0.4
4,288,253	-		DZA65_RS19810	0.55	-1.2
4,288,253	-		DZA65_RS19810	0.55	+1.5
4,288,253	-		DZA65_RS19810	0.55	-0.8
4,288,253	-		DZA65_RS19810	0.55	-2.4
4,288,294	+		DZA65_RS19810	0.59	-0.8
4,288,295	-		DZA65_RS19810	0.59	-0.1
4,288,326	-		DZA65_RS19810	0.62	+0.4
4,288,334	+		DZA65_RS19810	0.63	+1.3
4,288,334	+		DZA65_RS19810	0.63	-0.7
4,288,334	+		DZA65_RS19810	0.63	-2.3
4,288,335	-		DZA65_RS19810	0.63	+0.6
4,288,335	-		DZA65_RS19810	0.63	+1.8
4,288,335	-		DZA65_RS19810	0.63	+0.1
4,288,335	-		DZA65_RS19810	0.63	+1.2
4,288,335	-		DZA65_RS19810	0.63	-0.3
4,288,379	-		DZA65_RS19810	0.68	+0.9
4,288,379	-		DZA65_RS19810	0.68	-1.9
4,288,400	+		DZA65_RS19810	0.70	-0.5
4,288,400	+		DZA65_RS19810	0.70	+1.2
4,288,400	+		DZA65_RS19810	0.70	-0.1
4,288,400	+		DZA65_RS19810	0.70	-2.1
4,288,400	+		DZA65_RS19810	0.70	+1.1
4,288,400	+		DZA65_RS19810	0.70	-0.4
4,288,401	-		DZA65_RS19810	0.70	+0.9
4,288,401	-		DZA65_RS19810	0.70	+1.2
4,288,401	-		DZA65_RS19810	0.70	-2.4
4,288,411	+		DZA65_RS19810	0.71	+0.6
4,288,411	+		DZA65_RS19810	0.71	+0.7
4,288,411	+		DZA65_RS19810	0.71	+1.3
4,288,411	+		DZA65_RS19810	0.71	-2.6
4,288,411	+		DZA65_RS19810	0.71	+0.3
4,288,411	+		DZA65_RS19810	0.71	+1.3
4,288,411	+		DZA65_RS19810	0.71	-0.8
4,288,411	+		DZA65_RS19810	0.71	-0.3
4,288,411	+		DZA65_RS19810	0.71	+0.4
4,288,411	+		DZA65_RS19810	0.71	-1.9
4,288,411	+		DZA65_RS19810	0.71	-1.4
4,288,412	-		DZA65_RS19810	0.71	+1.2
4,288,412	-		DZA65_RS19810	0.71	-0.4
4,288,412	-		DZA65_RS19810	0.71	+0.5
4,288,412	-		DZA65_RS19810	0.71	-0.7
4,288,412	-		DZA65_RS19810	0.71	+1.3
4,288,412	-		DZA65_RS19810	0.71	-2.1
4,288,415	+		DZA65_RS19810	0.71	+0.2
4,288,415	+		DZA65_RS19810	0.71	-0.3
4,288,415	+		DZA65_RS19810	0.71	-1.0
4,288,415	+		DZA65_RS19810	0.71	-1.8
4,288,415	+		DZA65_RS19810	0.71	+0.7
4,288,416	-		DZA65_RS19810	0.72	-0.7
4,288,416	-		DZA65_RS19810	0.72	+0.9
4,288,416	-		DZA65_RS19810	0.72	+0.9
4,288,416	-		DZA65_RS19810	0.72	+0.7
4,288,416	-				+1.9
4,288,416	-		DZA65_RS19810	0.72	+2.2
4,288,416	-		DZA65_RS19810	0.72	+1.6
4,288,495	+		DZA65_RS19810	0.80	+0.0
4,288,496	-		DZA65_RS19810	0.80	+0.8
4,288,496	-		DZA65_RS19810	0.80	-1.4
4,288,573	+		DZA65_RS19810	0.87	+2.5
4,288,573	+		DZA65_RS19810	0.87	-2.3
4,288,573	+		DZA65_RS19810	0.87	+0.2
4,288,663	+				+0.5
4,288,663	+				-1.3
4,288,663	+				+1.2
4,288,664	-				+0.6
4,288,774	+		DZA65_RS19815	0.12	+0.2
4,288,774	+		DZA65_RS19815	0.12	+0.7
4,288,774	+		DZA65_RS19815	0.12	+0.4
4,288,774	+		DZA65_RS19815	0.12	+0.2
4,288,774	+				+0.9
4,288,775	-		DZA65_RS19815	0.12	+1.3
4,288,790	+		DZA65_RS19815	0.14	+0.9
4,288,875	+		DZA65_RS19815	0.26	+0.2
4,288,875	+		DZA65_RS19815	0.26	-1.7
4,288,875	+		DZA65_RS19815	0.26	-2.1
4,288,876	-		DZA65_RS19815	0.26	+0.2
4,288,966	+				+0.2
4,288,966	+		DZA65_RS19815	0.39	+0.2
4,288,973	+		DZA65_RS19815	0.40	-0.1
4,288,973	+		DZA65_RS19815	0.40	-2.3
4,288,974	-				+0.9
4,288,974	-		DZA65_RS19815	0.40	+0.2
4,288,974	-		DZA65_RS19815	0.40	-0.7
4,288,974	-		DZA65_RS19815	0.40	+0.3
4,288,974	-		DZA65_RS19815	0.40	-2.8
4,288,974	-		DZA65_RS19815	0.40	+2.4
4,288,974	-		DZA65_RS19815	0.40	+0.7
4,288,974	-		DZA65_RS19815	0.40	+0.8
4,288,974	-		DZA65_RS19815	0.40	-1.9
4,288,974	-		DZA65_RS19815	0.40	+0.6
4,289,032	+		DZA65_RS19815	0.49	-0.6
4,289,033	-		DZA65_RS19815	0.49	+2.5
4,289,067	-		DZA65_RS19815	0.54	-0.9
4,289,210	-		DZA65_RS19815	0.74	+0.9
4,289,245	+		DZA65_RS19815	0.79	+0.6
4,289,245	+		DZA65_RS19815	0.79	+0.6
4,289,246	-		DZA65_RS19815	0.79	-0.3
4,289,246	-		DZA65_RS19815	0.79	-0.1
4,289,246	-		DZA65_RS19815	0.79	-1.7
4,289,246	-		DZA65_RS19815	0.79	-0.1
4,289,322	+				-1.7
4,289,322	+				+0.2
4,289,322	+				-0.7
4,289,322	+				+0.9
4,289,325	+				-1.3
4,289,325	+				+0.5
4,289,325	+				-0.8
4,289,325	+				-0.0
4,289,325	+				+1.0
4,289,326	-				+0.6
4,289,326	-				-0.3
4,289,332	-				+2.1
4,289,332	-				+0.1
4,289,388	+				+0.6
4,289,388	+				-0.2
4,289,388	+				+1.9
4,289,388	+				+0.4
4,289,388	+				+0.0
4,289,388	+				+0.5
4,289,388	+				-1.4
4,289,388	+				-0.8
4,289,388	+				-0.1
4,289,388	+				-0.8
4,289,388	+				-0.9
4,289,388	+				-0.3
4,289,389	-				-0.3
4,289,389	-				+1.4
4,289,389	-				-0.8
4,289,389	-				-0.4
4,289,389	-				-1.7
4,289,389	-				+1.1
4,289,389	-				-0.5
4,289,389	-				-0.1
4,289,392	+				-0.9
4,289,392	+				-0.9
4,289,392	+				+0.4
4,289,392	+				+0.8
4,289,392	+				-0.1
4,289,392	+				-1.1
4,289,393	-				+0.1
4,289,393	-				-0.9
4,289,393	-				-0.0
4,289,411	+				-2.0
4,289,450	+				-1.1
4,289,450	+				+1.4
4,289,450	+				+1.8
4,289,450	+				-0.5
4,289,450	+				+0.5
4,289,450	+				-1.4
4,289,451	-				+0.1
4,289,451	-				+0.1
4,289,451	-				-0.5
4,289,451	-				-1.1
4,289,451	-				-1.5
4,289,455	+				-1.0
4,289,455	+				-0.8
4,289,456	-				-0.6
4,289,456	-				-0.5
4,289,456	-				+0.5
4,289,456	-				-0.6
4,289,456	-				+0.6
4,289,456	-				-1.3
4,289,654	+		DZA65_RS19820	0.31	-0.8
4,289,654	+		DZA65_RS19820	0.31	-0.3
4,289,655	-		DZA65_RS19820	0.31	-1.9
4,289,670	-				-1.1
4,289,670	-		DZA65_RS19820	0.33	+0.3
4,289,676	+		DZA65_RS19820	0.34	+0.9
4,289,676	+				+3.2
4,289,676	+		DZA65_RS19820	0.34	+0.1
4,289,677	-		DZA65_RS19820	0.34	+1.3
4,289,694	-		DZA65_RS19820	0.36	+0.1
4,289,694	-		DZA65_RS19820	0.36	+0.2