Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19755

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19750 and DZA65_RS19755 are separated by 50 nucleotidesDZA65_RS19755 and DZA65_RS19760 are separated by 46 nucleotides DZA65_RS19750: DZA65_RS19750 - hypothetical protein, at 4,277,033 to 4,278,232 _RS19750 DZA65_RS19755: DZA65_RS19755 - glycosyltransferase, at 4,278,283 to 4,279,410 _RS19755 DZA65_RS19760: DZA65_RS19760 - D-2-hydroxyacid dehydrogenase, at 4,279,457 to 4,280,383 _RS19760 Position (kb) 4278 4279 4280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4277.338 kb on + strand, within DZA65_RS19750at 4277.338 kb on + strand, within DZA65_RS19750at 4277.338 kb on + strand, within DZA65_RS19750at 4277.339 kb on - strand, within DZA65_RS19750at 4277.339 kb on - strand, within DZA65_RS19750at 4277.339 kb on - strand, within DZA65_RS19750at 4277.441 kb on + strand, within DZA65_RS19750at 4277.441 kb on + strand, within DZA65_RS19750at 4277.441 kb on + strand, within DZA65_RS19750at 4277.442 kb on - strand, within DZA65_RS19750at 4277.488 kb on + strand, within DZA65_RS19750at 4277.488 kb on + strand, within DZA65_RS19750at 4277.489 kb on - strand, within DZA65_RS19750at 4277.489 kb on - strandat 4277.522 kb on - strand, within DZA65_RS19750at 4277.522 kb on - strand, within DZA65_RS19750at 4277.574 kb on - strand, within DZA65_RS19750at 4277.589 kb on + strand, within DZA65_RS19750at 4277.589 kb on + strand, within DZA65_RS19750at 4277.693 kb on - strand, within DZA65_RS19750at 4277.715 kb on - strand, within DZA65_RS19750at 4277.767 kb on + strand, within DZA65_RS19750at 4277.866 kb on + strand, within DZA65_RS19750at 4277.866 kb on + strand, within DZA65_RS19750at 4277.867 kb on - strand, within DZA65_RS19750at 4277.958 kb on - strand, within DZA65_RS19750at 4277.958 kb on - strand, within DZA65_RS19750at 4277.958 kb on - strand, within DZA65_RS19750at 4277.958 kb on - strand, within DZA65_RS19750at 4277.958 kb on - strand, within DZA65_RS19750at 4278.009 kb on + strand, within DZA65_RS19750at 4278.010 kb on - strand, within DZA65_RS19750at 4278.083 kb on + strand, within DZA65_RS19750at 4278.083 kb on + strand, within DZA65_RS19750at 4278.103 kb on + strand, within DZA65_RS19750at 4278.182 kb on + strandat 4278.209 kb on + strandat 4278.313 kb on + strandat 4278.324 kb on + strandat 4278.387 kb on + strandat 4278.387 kb on + strandat 4278.387 kb on + strandat 4278.415 kb on - strand, within DZA65_RS19755at 4278.415 kb on - strand, within DZA65_RS19755at 4278.417 kb on + strand, within DZA65_RS19755at 4278.432 kb on - strand, within DZA65_RS19755at 4278.432 kb on - strand, within DZA65_RS19755at 4278.432 kb on - strand, within DZA65_RS19755at 4278.482 kb on + strand, within DZA65_RS19755at 4278.582 kb on + strand, within DZA65_RS19755at 4278.594 kb on + strand, within DZA65_RS19755at 4278.607 kb on - strand, within DZA65_RS19755at 4278.716 kb on + strand, within DZA65_RS19755at 4278.716 kb on + strand, within DZA65_RS19755at 4278.756 kb on - strand, within DZA65_RS19755at 4278.771 kb on + strand, within DZA65_RS19755at 4278.790 kb on - strand, within DZA65_RS19755at 4278.825 kb on + strand, within DZA65_RS19755at 4278.834 kb on + strand, within DZA65_RS19755at 4278.835 kb on - strand, within DZA65_RS19755at 4278.898 kb on + strand, within DZA65_RS19755at 4278.920 kb on + strand, within DZA65_RS19755at 4278.920 kb on + strand, within DZA65_RS19755at 4278.921 kb on - strand, within DZA65_RS19755at 4278.921 kb on - strand, within DZA65_RS19755at 4278.948 kb on - strand, within DZA65_RS19755at 4279.028 kb on - strand, within DZA65_RS19755at 4279.067 kb on + strandat 4279.068 kb on - strand, within DZA65_RS19755at 4279.068 kb on - strand, within DZA65_RS19755at 4279.106 kb on + strand, within DZA65_RS19755at 4279.197 kb on + strand, within DZA65_RS19755at 4279.198 kb on - strand, within DZA65_RS19755at 4279.198 kb on - strand, within DZA65_RS19755at 4279.270 kb on + strand, within DZA65_RS19755at 4279.270 kb on + strand, within DZA65_RS19755at 4279.270 kb on + strand, within DZA65_RS19755at 4279.271 kb on - strand, within DZA65_RS19755at 4279.271 kb on - strand, within DZA65_RS19755at 4279.271 kb on - strand, within DZA65_RS19755at 4279.337 kb on + strandat 4279.338 kb on - strandat 4279.366 kb on + strandat 4279.366 kb on + strandat 4279.367 kb on - strandat 4279.367 kb on - strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.406 kb on + strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.407 kb on - strandat 4279.408 kb on + strandat 4279.408 kb on + strandat 4279.409 kb on - strandat 4279.409 kb on - strandat 4279.452 kb on + strandat 4279.583 kb on - strand, within DZA65_RS19760at 4279.583 kb on - strand, within DZA65_RS19760at 4279.674 kb on + strand, within DZA65_RS19760at 4279.675 kb on - strand, within DZA65_RS19760at 4279.675 kb on - strand, within DZA65_RS19760at 4279.675 kb on - strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.773 kb on + strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.774 kb on - strand, within DZA65_RS19760at 4279.777 kb on + strand, within DZA65_RS19760at 4279.778 kb on - strand, within DZA65_RS19760at 4279.818 kb on + strand, within DZA65_RS19760at 4279.818 kb on + strand, within DZA65_RS19760at 4279.818 kb on + strand, within DZA65_RS19760at 4279.818 kb on + strand, within DZA65_RS19760at 4279.818 kb on + strand, within DZA65_RS19760at 4279.896 kb on + strand, within DZA65_RS19760at 4279.896 kb on + strand, within DZA65_RS19760at 4279.897 kb on - strand, within DZA65_RS19760at 4280.079 kb on + strand, within DZA65_RS19760at 4280.079 kb on + strand, within DZA65_RS19760at 4280.079 kb on + strand, within DZA65_RS19760at 4280.080 kb on - strand, within DZA65_RS19760at 4280.091 kb on + strand, within DZA65_RS19760at 4280.092 kb on - strand, within DZA65_RS19760at 4280.092 kb on - strand, within DZA65_RS19760at 4280.101 kb on + strand, within DZA65_RS19760at 4280.101 kb on + strand, within DZA65_RS19760at 4280.101 kb on + strand, within DZA65_RS19760at 4280.102 kb on - strand, within DZA65_RS19760at 4280.102 kb on - strand, within DZA65_RS19760at 4280.102 kb on - strand, within DZA65_RS19760at 4280.102 kb on - strand, within DZA65_RS19760at 4280.102 kb on - strand, within DZA65_RS19760at 4280.102 kb on - strand, within DZA65_RS19760at 4280.173 kb on + strand, within DZA65_RS19760at 4280.174 kb on - strand, within DZA65_RS19760at 4280.174 kb on - strand, within DZA65_RS19760at 4280.174 kb on - strand, within DZA65_RS19760at 4280.175 kb on + strand, within DZA65_RS19760at 4280.260 kb on + strand, within DZA65_RS19760at 4280.260 kb on + strand, within DZA65_RS19760at 4280.260 kb on + strand, within DZA65_RS19760at 4280.261 kb on - strand, within DZA65_RS19760at 4280.261 kb on - strand, within DZA65_RS19760at 4280.261 kb on - strand, within DZA65_RS19760at 4280.261 kb on - strand, within DZA65_RS19760at 4280.261 kb on - strand, within DZA65_RS19760at 4280.297 kb on + strandat 4280.297 kb on + strandat 4280.298 kb on - strandat 4280.298 kb on - strandat 4280.310 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,277,338 + DZA65_RS19750 0.25 -0.3
4,277,338 + DZA65_RS19750 0.25 -0.7
4,277,338 + DZA65_RS19750 0.25 -1.8
4,277,339 - DZA65_RS19750 0.26 -0.2
4,277,339 - DZA65_RS19750 0.26 +0.4
4,277,339 - DZA65_RS19750 0.26 -0.9
4,277,441 + DZA65_RS19750 0.34 -1.5
4,277,441 + DZA65_RS19750 0.34 -1.7
4,277,441 + DZA65_RS19750 0.34 +1.5
4,277,442 - DZA65_RS19750 0.34 -1.4
4,277,488 + DZA65_RS19750 0.38 -1.0
4,277,488 + DZA65_RS19750 0.38 -1.7
4,277,489 - DZA65_RS19750 0.38 -0.9
4,277,489 - -0.7
4,277,522 - DZA65_RS19750 0.41 +0.3
4,277,522 - DZA65_RS19750 0.41 -2.4
4,277,574 - DZA65_RS19750 0.45 -0.8
4,277,589 + DZA65_RS19750 0.46 -0.7
4,277,589 + DZA65_RS19750 0.46 +0.9
4,277,693 - DZA65_RS19750 0.55 -0.2
4,277,715 - DZA65_RS19750 0.57 -1.3
4,277,767 + DZA65_RS19750 0.61 -2.8
4,277,866 + DZA65_RS19750 0.69 -1.9
4,277,866 + DZA65_RS19750 0.69 -1.1
4,277,867 - DZA65_RS19750 0.69 -1.8
4,277,958 - DZA65_RS19750 0.77 +0.3
4,277,958 - DZA65_RS19750 0.77 -1.4
4,277,958 - DZA65_RS19750 0.77 +0.2
4,277,958 - DZA65_RS19750 0.77 +0.0
4,277,958 - DZA65_RS19750 0.77 -0.1
4,278,009 + DZA65_RS19750 0.81 +1.6
4,278,010 - DZA65_RS19750 0.81 -1.7
4,278,083 + DZA65_RS19750 0.88 -1.9
4,278,083 + DZA65_RS19750 0.88 -1.1
4,278,103 + DZA65_RS19750 0.89 +0.9
4,278,182 + -0.7
4,278,209 + -2.1
4,278,313 + -1.8
4,278,324 + -2.3
4,278,387 + -1.6
4,278,387 + +2.9
4,278,387 + -2.2
4,278,415 - DZA65_RS19755 0.12 -0.8
4,278,415 - DZA65_RS19755 0.12 -0.9
4,278,417 + DZA65_RS19755 0.12 -0.7
4,278,432 - DZA65_RS19755 0.13 +0.2
4,278,432 - DZA65_RS19755 0.13 +0.3
4,278,432 - DZA65_RS19755 0.13 -0.4
4,278,482 + DZA65_RS19755 0.18 -2.1
4,278,582 + DZA65_RS19755 0.27 -1.7
4,278,594 + DZA65_RS19755 0.28 -2.6
4,278,607 - DZA65_RS19755 0.29 -1.6
4,278,716 + DZA65_RS19755 0.38 -0.7
4,278,716 + DZA65_RS19755 0.38 -0.2
4,278,756 - DZA65_RS19755 0.42 -1.4
4,278,771 + DZA65_RS19755 0.43 -1.7
4,278,790 - DZA65_RS19755 0.45 -0.3
4,278,825 + DZA65_RS19755 0.48 -1.4
4,278,834 + DZA65_RS19755 0.49 -0.3
4,278,835 - DZA65_RS19755 0.49 -1.5
4,278,898 + DZA65_RS19755 0.55 -0.2
4,278,920 + DZA65_RS19755 0.56 +1.2
4,278,920 + DZA65_RS19755 0.56 -0.1
4,278,921 - DZA65_RS19755 0.57 -1.1
4,278,921 - DZA65_RS19755 0.57 +1.0
4,278,948 - DZA65_RS19755 0.59 +0.9
4,279,028 - DZA65_RS19755 0.66 -0.5
4,279,067 + -0.1
4,279,068 - DZA65_RS19755 0.70 +1.0
4,279,068 - DZA65_RS19755 0.70 -2.6
4,279,106 + DZA65_RS19755 0.73 -0.9
4,279,197 + DZA65_RS19755 0.81 -0.8
4,279,198 - DZA65_RS19755 0.81 -0.4
4,279,198 - DZA65_RS19755 0.81 +0.1
4,279,270 + DZA65_RS19755 0.88 -2.1
4,279,270 + DZA65_RS19755 0.88 -1.9
4,279,270 + DZA65_RS19755 0.88 -0.9
4,279,271 - DZA65_RS19755 0.88 -2.3
4,279,271 - DZA65_RS19755 0.88 -0.4
4,279,271 - DZA65_RS19755 0.88 -1.5
4,279,337 + +0.5
4,279,338 - -2.6
4,279,366 + -1.1
4,279,366 + +0.3
4,279,367 - -2.3
4,279,367 - -0.7
4,279,406 + -0.1
4,279,406 + -0.8
4,279,406 + +0.1
4,279,406 + +0.3
4,279,406 + +0.1
4,279,406 + -1.1
4,279,406 + -0.8
4,279,406 + -0.3
4,279,406 + +1.4
4,279,406 + +0.6
4,279,406 + +0.3
4,279,406 + -0.1
4,279,406 + +0.9
4,279,407 - -0.4
4,279,407 - -1.4
4,279,407 - +1.8
4,279,407 - +0.3
4,279,407 - -0.2
4,279,407 - -0.7
4,279,407 - -2.4
4,279,407 - -0.1
4,279,407 - -1.4
4,279,407 - +2.2
4,279,407 - -2.3
4,279,407 - +0.3
4,279,407 - -2.2
4,279,408 + +1.5
4,279,408 + +0.0
4,279,409 - +0.3
4,279,409 - +0.6
4,279,452 + -0.8
4,279,583 - DZA65_RS19760 0.14 +1.5
4,279,583 - DZA65_RS19760 0.14 +0.5
4,279,674 + DZA65_RS19760 0.23 -2.3
4,279,675 - DZA65_RS19760 0.24 +0.3
4,279,675 - DZA65_RS19760 0.24 -0.7
4,279,675 - DZA65_RS19760 0.24 -0.4
4,279,773 + DZA65_RS19760 0.34 -0.3
4,279,773 + DZA65_RS19760 0.34 -1.7
4,279,773 + DZA65_RS19760 0.34 -0.1
4,279,773 + DZA65_RS19760 0.34 +1.1
4,279,773 + DZA65_RS19760 0.34 +2.2
4,279,773 + DZA65_RS19760 0.34 +0.3
4,279,773 + DZA65_RS19760 0.34 -0.9
4,279,773 + DZA65_RS19760 0.34 -0.1
4,279,773 + DZA65_RS19760 0.34 -1.6
4,279,773 + DZA65_RS19760 0.34 +0.5
4,279,773 + DZA65_RS19760 0.34 +1.4
4,279,774 - DZA65_RS19760 0.34 +0.9
4,279,774 - DZA65_RS19760 0.34 -0.1
4,279,774 - DZA65_RS19760 0.34 +0.5
4,279,774 - DZA65_RS19760 0.34 +1.0
4,279,774 - DZA65_RS19760 0.34 -2.8
4,279,774 - DZA65_RS19760 0.34 -1.7
4,279,774 - DZA65_RS19760 0.34 -0.2
4,279,774 - DZA65_RS19760 0.34 -2.6
4,279,774 - DZA65_RS19760 0.34 +0.6
4,279,774 - DZA65_RS19760 0.34 +1.1
4,279,774 - DZA65_RS19760 0.34 -0.4
4,279,774 - DZA65_RS19760 0.34 -2.3
4,279,777 + DZA65_RS19760 0.35 +0.8
4,279,778 - DZA65_RS19760 0.35 -0.2
4,279,818 + DZA65_RS19760 0.39 -0.3
4,279,818 + DZA65_RS19760 0.39 +1.2
4,279,818 + DZA65_RS19760 0.39 -1.9
4,279,818 + DZA65_RS19760 0.39 +1.2
4,279,818 + DZA65_RS19760 0.39 +1.2
4,279,896 + DZA65_RS19760 0.47 +2.3
4,279,896 + DZA65_RS19760 0.47 -0.8
4,279,897 - DZA65_RS19760 0.47 -1.9
4,280,079 + DZA65_RS19760 0.67 +2.5
4,280,079 + DZA65_RS19760 0.67 +0.5
4,280,079 + DZA65_RS19760 0.67 -0.5
4,280,080 - DZA65_RS19760 0.67 +0.8
4,280,091 + DZA65_RS19760 0.68 -1.1
4,280,092 - DZA65_RS19760 0.69 +2.6
4,280,092 - DZA65_RS19760 0.69 -0.5
4,280,101 + DZA65_RS19760 0.69 -0.1
4,280,101 + DZA65_RS19760 0.69 -0.6
4,280,101 + DZA65_RS19760 0.69 +0.0
4,280,102 - DZA65_RS19760 0.70 -1.1
4,280,102 - DZA65_RS19760 0.70 -2.3
4,280,102 - DZA65_RS19760 0.70 +0.9
4,280,102 - DZA65_RS19760 0.70 +0.9
4,280,102 - DZA65_RS19760 0.70 -0.7
4,280,102 - DZA65_RS19760 0.70 +0.9
4,280,173 + DZA65_RS19760 0.77 +2.2
4,280,174 - DZA65_RS19760 0.77 +0.3
4,280,174 - DZA65_RS19760 0.77 +0.2
4,280,174 - DZA65_RS19760 0.77 -0.0
4,280,175 + DZA65_RS19760 0.77 +2.1
4,280,260 + DZA65_RS19760 0.87 +0.5
4,280,260 + DZA65_RS19760 0.87 +0.2
4,280,260 + DZA65_RS19760 0.87 +0.1
4,280,261 - DZA65_RS19760 0.87 -1.7
4,280,261 - DZA65_RS19760 0.87 -1.6
4,280,261 - DZA65_RS19760 0.87 +0.9
4,280,261 - DZA65_RS19760 0.87 -1.0
4,280,261 - DZA65_RS19760 0.87 -0.1
4,280,297 + -2.4
4,280,297 + -0.1
4,280,298 - -1.2
4,280,298 - -0.5
4,280,310 - +1.1

Or see this region's nucleotide sequence