Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19740 and DZA65_RS19745 are separated by 10 nucleotides DZA65_RS19745 and DZA65_RS19750 overlap by 4 nucleotides DZA65_RS19750 and DZA65_RS19755 are separated by 50 nucleotides
DZA65_RS19740: DZA65_RS19740 - ABC transporter ATP-binding protein, at 4,275,356 to 4,276,087
_RS19740
DZA65_RS19745: DZA65_RS19745 - GDP-L-fucose synthase, at 4,276,098 to 4,277,036
_RS19745
DZA65_RS19750: DZA65_RS19750 - hypothetical protein, at 4,277,033 to 4,278,232
_RS19750
DZA65_RS19755: DZA65_RS19755 - glycosyltransferase, at 4,278,283 to 4,279,410
_RS19755
Position (kb) 4277
4278
4279 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4276.071 kb on + strand at 4276.075 kb on + strand at 4276.075 kb on + strand at 4276.121 kb on - strand at 4276.187 kb on + strand at 4276.192 kb on + strand, within DZA65_RS19745 at 4276.205 kb on + strand, within DZA65_RS19745 at 4276.272 kb on + strand, within DZA65_RS19745 at 4276.297 kb on + strand, within DZA65_RS19745 at 4276.350 kb on - strand, within DZA65_RS19745 at 4276.355 kb on + strand, within DZA65_RS19745 at 4276.371 kb on - strand, within DZA65_RS19745 at 4276.371 kb on - strand, within DZA65_RS19745 at 4276.371 kb on - strand, within DZA65_RS19745 at 4276.392 kb on - strand, within DZA65_RS19745 at 4276.444 kb on - strand, within DZA65_RS19745 at 4276.453 kb on + strand, within DZA65_RS19745 at 4276.503 kb on + strand, within DZA65_RS19745 at 4276.510 kb on - strand, within DZA65_RS19745 at 4276.544 kb on + strand, within DZA65_RS19745 at 4276.549 kb on + strand, within DZA65_RS19745 at 4276.560 kb on + strand, within DZA65_RS19745 at 4276.565 kb on + strand, within DZA65_RS19745 at 4276.565 kb on + strand, within DZA65_RS19745 at 4276.581 kb on + strand, within DZA65_RS19745 at 4276.668 kb on + strand, within DZA65_RS19745 at 4276.669 kb on - strand, within DZA65_RS19745 at 4276.741 kb on - strand, within DZA65_RS19745 at 4276.741 kb on - strand, within DZA65_RS19745 at 4276.745 kb on + strand, within DZA65_RS19745 at 4276.745 kb on + strand, within DZA65_RS19745 at 4276.746 kb on - strand, within DZA65_RS19745 at 4276.769 kb on - strand, within DZA65_RS19745 at 4276.782 kb on - strand, within DZA65_RS19745 at 4276.816 kb on + strand, within DZA65_RS19745 at 4276.835 kb on + strand, within DZA65_RS19745 at 4276.857 kb on + strand, within DZA65_RS19745 at 4276.857 kb on + strand, within DZA65_RS19745 at 4276.860 kb on + strand, within DZA65_RS19745 at 4276.860 kb on + strand, within DZA65_RS19745 at 4276.861 kb on - strand, within DZA65_RS19745 at 4276.861 kb on - strand, within DZA65_RS19745 at 4276.861 kb on - strand, within DZA65_RS19745 at 4276.924 kb on + strand, within DZA65_RS19745 at 4276.924 kb on + strand, within DZA65_RS19745 at 4276.931 kb on - strand, within DZA65_RS19745 at 4276.931 kb on - strand, within DZA65_RS19745 at 4277.049 kb on + strand at 4277.049 kb on + strand at 4277.050 kb on - strand at 4277.160 kb on + strand, within DZA65_RS19750 at 4277.251 kb on + strand, within DZA65_RS19750 at 4277.273 kb on + strand, within DZA65_RS19750 at 4277.274 kb on - strand, within DZA65_RS19750 at 4277.281 kb on + strand, within DZA65_RS19750 at 4277.338 kb on + strand, within DZA65_RS19750 at 4277.338 kb on + strand, within DZA65_RS19750 at 4277.338 kb on + strand, within DZA65_RS19750 at 4277.339 kb on - strand, within DZA65_RS19750 at 4277.339 kb on - strand, within DZA65_RS19750 at 4277.339 kb on - strand, within DZA65_RS19750 at 4277.441 kb on + strand, within DZA65_RS19750 at 4277.441 kb on + strand, within DZA65_RS19750 at 4277.441 kb on + strand, within DZA65_RS19750 at 4277.442 kb on - strand, within DZA65_RS19750 at 4277.488 kb on + strand, within DZA65_RS19750 at 4277.488 kb on + strand, within DZA65_RS19750 at 4277.489 kb on - strand, within DZA65_RS19750 at 4277.489 kb on - strand at 4277.522 kb on - strand, within DZA65_RS19750 at 4277.522 kb on - strand, within DZA65_RS19750 at 4277.574 kb on - strand, within DZA65_RS19750 at 4277.589 kb on + strand, within DZA65_RS19750 at 4277.589 kb on + strand, within DZA65_RS19750 at 4277.693 kb on - strand, within DZA65_RS19750 at 4277.715 kb on - strand, within DZA65_RS19750 at 4277.767 kb on + strand, within DZA65_RS19750 at 4277.866 kb on + strand, within DZA65_RS19750 at 4277.866 kb on + strand, within DZA65_RS19750 at 4277.867 kb on - strand, within DZA65_RS19750 at 4277.958 kb on - strand, within DZA65_RS19750 at 4277.958 kb on - strand, within DZA65_RS19750 at 4277.958 kb on - strand, within DZA65_RS19750 at 4277.958 kb on - strand, within DZA65_RS19750 at 4277.958 kb on - strand, within DZA65_RS19750 at 4278.009 kb on + strand, within DZA65_RS19750 at 4278.010 kb on - strand, within DZA65_RS19750 at 4278.083 kb on + strand, within DZA65_RS19750 at 4278.083 kb on + strand, within DZA65_RS19750 at 4278.103 kb on + strand, within DZA65_RS19750 at 4278.182 kb on + strand at 4278.209 kb on + strand at 4278.313 kb on + strand at 4278.324 kb on + strand at 4278.387 kb on + strand at 4278.387 kb on + strand at 4278.387 kb on + strand at 4278.415 kb on - strand, within DZA65_RS19755 at 4278.415 kb on - strand, within DZA65_RS19755 at 4278.417 kb on + strand, within DZA65_RS19755 at 4278.432 kb on - strand, within DZA65_RS19755 at 4278.432 kb on - strand, within DZA65_RS19755 at 4278.432 kb on - strand, within DZA65_RS19755 at 4278.482 kb on + strand, within DZA65_RS19755 at 4278.582 kb on + strand, within DZA65_RS19755 at 4278.594 kb on + strand, within DZA65_RS19755 at 4278.607 kb on - strand, within DZA65_RS19755 at 4278.716 kb on + strand, within DZA65_RS19755 at 4278.716 kb on + strand, within DZA65_RS19755 at 4278.756 kb on - strand, within DZA65_RS19755 at 4278.771 kb on + strand, within DZA65_RS19755 at 4278.790 kb on - strand, within DZA65_RS19755 at 4278.825 kb on + strand, within DZA65_RS19755 at 4278.834 kb on + strand, within DZA65_RS19755 at 4278.835 kb on - strand, within DZA65_RS19755 at 4278.898 kb on + strand, within DZA65_RS19755 at 4278.920 kb on + strand, within DZA65_RS19755 at 4278.920 kb on + strand, within DZA65_RS19755 at 4278.921 kb on - strand, within DZA65_RS19755 at 4278.921 kb on - strand, within DZA65_RS19755 at 4278.948 kb on - strand, within DZA65_RS19755 at 4279.028 kb on - strand, within DZA65_RS19755 at 4279.067 kb on + strand at 4279.068 kb on - strand, within DZA65_RS19755 at 4279.068 kb on - strand, within DZA65_RS19755 at 4279.106 kb on + strand, within DZA65_RS19755 at 4279.197 kb on + strand, within DZA65_RS19755 at 4279.198 kb on - strand, within DZA65_RS19755 at 4279.198 kb on - strand, within DZA65_RS19755
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,276,071 + +0.6 4,276,075 + +0.3 4,276,075 + +1.3 4,276,121 - -0.4 4,276,187 + -2.6 4,276,192 + DZA65_RS19745 0.10 -4.1 4,276,205 + DZA65_RS19745 0.11 -1.8 4,276,272 + DZA65_RS19745 0.19 -1.3 4,276,297 + DZA65_RS19745 0.21 -3.2 4,276,350 - DZA65_RS19745 0.27 -2.4 4,276,355 + DZA65_RS19745 0.27 -1.1 4,276,371 - DZA65_RS19745 0.29 -2.3 4,276,371 - DZA65_RS19745 0.29 -0.1 4,276,371 - DZA65_RS19745 0.29 -2.6 4,276,392 - DZA65_RS19745 0.31 -1.9 4,276,444 - DZA65_RS19745 0.37 -2.1 4,276,453 + DZA65_RS19745 0.38 -2.9 4,276,503 + DZA65_RS19745 0.43 -1.6 4,276,510 - DZA65_RS19745 0.44 -0.8 4,276,544 + DZA65_RS19745 0.47 -0.7 4,276,549 + DZA65_RS19745 0.48 -0.8 4,276,560 + DZA65_RS19745 0.49 -1.8 4,276,565 + DZA65_RS19745 0.50 -1.9 4,276,565 + DZA65_RS19745 0.50 -1.1 4,276,581 + DZA65_RS19745 0.51 -0.7 4,276,668 + DZA65_RS19745 0.61 -1.4 4,276,669 - DZA65_RS19745 0.61 +0.0 4,276,741 - DZA65_RS19745 0.68 -0.7 4,276,741 - DZA65_RS19745 0.68 -0.4 4,276,745 + DZA65_RS19745 0.69 +0.6 4,276,745 + DZA65_RS19745 0.69 -1.4 4,276,746 - DZA65_RS19745 0.69 -2.1 4,276,769 - DZA65_RS19745 0.71 -0.1 4,276,782 - DZA65_RS19745 0.73 -1.2 4,276,816 + DZA65_RS19745 0.76 -0.5 4,276,835 + DZA65_RS19745 0.78 -2.4 4,276,857 + DZA65_RS19745 0.81 -0.7 4,276,857 + DZA65_RS19745 0.81 -1.0 4,276,860 + DZA65_RS19745 0.81 -1.3 4,276,860 + DZA65_RS19745 0.81 -0.3 4,276,861 - DZA65_RS19745 0.81 +0.9 4,276,861 - DZA65_RS19745 0.81 -2.9 4,276,861 - DZA65_RS19745 0.81 -1.0 4,276,924 + DZA65_RS19745 0.88 -1.1 4,276,924 + DZA65_RS19745 0.88 -1.9 4,276,931 - DZA65_RS19745 0.89 -1.4 4,276,931 - DZA65_RS19745 0.89 -0.8 4,277,049 + -1.9 4,277,049 + -0.4 4,277,050 - -2.3 4,277,160 + DZA65_RS19750 0.11 +0.9 4,277,251 + DZA65_RS19750 0.18 -0.1 4,277,273 + DZA65_RS19750 0.20 -3.2 4,277,274 - DZA65_RS19750 0.20 -1.7 4,277,281 + DZA65_RS19750 0.21 -1.3 4,277,338 + DZA65_RS19750 0.25 -0.3 4,277,338 + DZA65_RS19750 0.25 -0.7 4,277,338 + DZA65_RS19750 0.25 -1.8 4,277,339 - DZA65_RS19750 0.26 -0.2 4,277,339 - DZA65_RS19750 0.26 +0.4 4,277,339 - DZA65_RS19750 0.26 -0.9 4,277,441 + DZA65_RS19750 0.34 -1.5 4,277,441 + DZA65_RS19750 0.34 -1.7 4,277,441 + DZA65_RS19750 0.34 +1.5 4,277,442 - DZA65_RS19750 0.34 -1.4 4,277,488 + DZA65_RS19750 0.38 -1.0 4,277,488 + DZA65_RS19750 0.38 -1.7 4,277,489 - DZA65_RS19750 0.38 -0.9 4,277,489 - -0.7 4,277,522 - DZA65_RS19750 0.41 +0.3 4,277,522 - DZA65_RS19750 0.41 -2.4 4,277,574 - DZA65_RS19750 0.45 -0.8 4,277,589 + DZA65_RS19750 0.46 -0.7 4,277,589 + DZA65_RS19750 0.46 +0.9 4,277,693 - DZA65_RS19750 0.55 -0.2 4,277,715 - DZA65_RS19750 0.57 -1.3 4,277,767 + DZA65_RS19750 0.61 -2.8 4,277,866 + DZA65_RS19750 0.69 -1.9 4,277,866 + DZA65_RS19750 0.69 -1.1 4,277,867 - DZA65_RS19750 0.69 -1.8 4,277,958 - DZA65_RS19750 0.77 +0.3 4,277,958 - DZA65_RS19750 0.77 -1.4 4,277,958 - DZA65_RS19750 0.77 +0.2 4,277,958 - DZA65_RS19750 0.77 +0.0 4,277,958 - DZA65_RS19750 0.77 -0.1 4,278,009 + DZA65_RS19750 0.81 +1.6 4,278,010 - DZA65_RS19750 0.81 -1.7 4,278,083 + DZA65_RS19750 0.88 -1.9 4,278,083 + DZA65_RS19750 0.88 -1.1 4,278,103 + DZA65_RS19750 0.89 +0.9 4,278,182 + -0.7 4,278,209 + -2.1 4,278,313 + -1.8 4,278,324 + -2.3 4,278,387 + -1.6 4,278,387 + +2.9 4,278,387 + -2.2 4,278,415 - DZA65_RS19755 0.12 -0.8 4,278,415 - DZA65_RS19755 0.12 -0.9 4,278,417 + DZA65_RS19755 0.12 -0.7 4,278,432 - DZA65_RS19755 0.13 +0.2 4,278,432 - DZA65_RS19755 0.13 +0.3 4,278,432 - DZA65_RS19755 0.13 -0.4 4,278,482 + DZA65_RS19755 0.18 -2.1 4,278,582 + DZA65_RS19755 0.27 -1.7 4,278,594 + DZA65_RS19755 0.28 -2.6 4,278,607 - DZA65_RS19755 0.29 -1.6 4,278,716 + DZA65_RS19755 0.38 -0.7 4,278,716 + DZA65_RS19755 0.38 -0.2 4,278,756 - DZA65_RS19755 0.42 -1.4 4,278,771 + DZA65_RS19755 0.43 -1.7 4,278,790 - DZA65_RS19755 0.45 -0.3 4,278,825 + DZA65_RS19755 0.48 -1.4 4,278,834 + DZA65_RS19755 0.49 -0.3 4,278,835 - DZA65_RS19755 0.49 -1.5 4,278,898 + DZA65_RS19755 0.55 -0.2 4,278,920 + DZA65_RS19755 0.56 +1.2 4,278,920 + DZA65_RS19755 0.56 -0.1 4,278,921 - DZA65_RS19755 0.57 -1.1 4,278,921 - DZA65_RS19755 0.57 +1.0 4,278,948 - DZA65_RS19755 0.59 +0.9 4,279,028 - DZA65_RS19755 0.66 -0.5 4,279,067 + -0.1 4,279,068 - DZA65_RS19755 0.70 +1.0 4,279,068 - DZA65_RS19755 0.70 -2.6 4,279,106 + DZA65_RS19755 0.73 -0.9 4,279,197 + DZA65_RS19755 0.81 -0.8 4,279,198 - DZA65_RS19755 0.81 -0.4 4,279,198 - DZA65_RS19755 0.81 +0.1
Or see this region's nucleotide sequence