Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19635

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19630 and DZA65_RS19635 are separated by 104 nucleotidesDZA65_RS19635 and DZA65_RS19640 overlap by 1 nucleotidesDZA65_RS19640 and DZA65_RS19645 are separated by 78 nucleotides DZA65_RS19630: DZA65_RS19630 - glutathione synthase, at 4,251,062 to 4,252,015 _RS19630 DZA65_RS19635: DZA65_RS19635 - YqgE/AlgH family protein, at 4,252,120 to 4,252,683 _RS19635 DZA65_RS19640: DZA65_RS19640 - Holliday junction resolvase RuvX, at 4,252,683 to 4,253,114 _RS19640 DZA65_RS19645: DZA65_RS19645 - class 1 fructose-bisphosphatase, at 4,253,193 to 4,254,197 _RS19645 Position (kb) 4252 4253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4251.170 kb on + strand, within DZA65_RS19630at 4251.170 kb on + strand, within DZA65_RS19630at 4251.170 kb on + strand, within DZA65_RS19630at 4251.170 kb on + strand, within DZA65_RS19630at 4251.170 kb on + strand, within DZA65_RS19630at 4251.170 kb on + strand, within DZA65_RS19630at 4251.170 kb on + strand, within DZA65_RS19630at 4251.170 kb on + strand, within DZA65_RS19630at 4251.170 kb on + strand, within DZA65_RS19630at 4251.170 kb on + strand, within DZA65_RS19630at 4251.171 kb on - strand, within DZA65_RS19630at 4251.171 kb on - strand, within DZA65_RS19630at 4251.171 kb on - strand, within DZA65_RS19630at 4251.171 kb on - strand, within DZA65_RS19630at 4251.171 kb on - strand, within DZA65_RS19630at 4251.171 kb on - strand, within DZA65_RS19630at 4251.171 kb on - strand, within DZA65_RS19630at 4251.171 kb on - strand, within DZA65_RS19630at 4251.192 kb on - strand, within DZA65_RS19630at 4251.226 kb on + strand, within DZA65_RS19630at 4251.248 kb on + strand, within DZA65_RS19630at 4251.249 kb on - strand, within DZA65_RS19630at 4251.306 kb on + strand, within DZA65_RS19630at 4251.307 kb on - strand, within DZA65_RS19630at 4251.307 kb on - strand, within DZA65_RS19630at 4251.307 kb on - strand, within DZA65_RS19630at 4251.307 kb on - strand, within DZA65_RS19630at 4251.350 kb on + strand, within DZA65_RS19630at 4251.350 kb on + strand, within DZA65_RS19630at 4251.350 kb on + strand, within DZA65_RS19630at 4251.350 kb on + strand, within DZA65_RS19630at 4251.351 kb on - strand, within DZA65_RS19630at 4251.351 kb on - strand, within DZA65_RS19630at 4251.359 kb on + strand, within DZA65_RS19630at 4251.359 kb on + strand, within DZA65_RS19630at 4251.359 kb on + strand, within DZA65_RS19630at 4251.359 kb on + strand, within DZA65_RS19630at 4251.360 kb on - strand, within DZA65_RS19630at 4251.360 kb on - strand, within DZA65_RS19630at 4251.360 kb on - strand, within DZA65_RS19630at 4251.360 kb on - strand, within DZA65_RS19630at 4251.360 kb on - strand, within DZA65_RS19630at 4251.360 kb on - strand, within DZA65_RS19630at 4251.360 kb on - strand, within DZA65_RS19630at 4251.360 kb on - strand, within DZA65_RS19630at 4251.361 kb on + strand, within DZA65_RS19630at 4251.362 kb on - strand, within DZA65_RS19630at 4251.362 kb on - strand, within DZA65_RS19630at 4251.659 kb on + strand, within DZA65_RS19630at 4251.659 kb on + strand, within DZA65_RS19630at 4251.660 kb on - strand, within DZA65_RS19630at 4251.693 kb on + strand, within DZA65_RS19630at 4251.722 kb on + strand, within DZA65_RS19630at 4251.722 kb on + strand, within DZA65_RS19630at 4251.722 kb on + strand, within DZA65_RS19630at 4251.950 kb on + strandat 4251.950 kb on + strandat 4252.019 kb on + strandat 4252.047 kb on + strandat 4252.047 kb on + strandat 4252.047 kb on + strandat 4252.047 kb on + strandat 4252.047 kb on + strandat 4252.047 kb on + strandat 4252.047 kb on + strandat 4252.048 kb on - strandat 4252.048 kb on - strandat 4252.048 kb on - strandat 4252.048 kb on - strandat 4252.048 kb on - strandat 4252.048 kb on - strandat 4252.048 kb on - strandat 4252.048 kb on - strandat 4252.109 kb on + strandat 4252.113 kb on - strandat 4252.113 kb on - strandat 4252.113 kb on - strandat 4252.127 kb on + strandat 4252.127 kb on + strandat 4252.158 kb on + strandat 4252.158 kb on + strandat 4252.158 kb on + strandat 4252.158 kb on + strandat 4252.158 kb on + strandat 4252.192 kb on + strand, within DZA65_RS19635at 4252.192 kb on + strand, within DZA65_RS19635at 4252.192 kb on + strand, within DZA65_RS19635at 4252.192 kb on + strand, within DZA65_RS19635at 4252.192 kb on + strand, within DZA65_RS19635at 4252.192 kb on + strand, within DZA65_RS19635at 4252.192 kb on + strand, within DZA65_RS19635at 4252.192 kb on + strand, within DZA65_RS19635at 4252.230 kb on + strand, within DZA65_RS19635at 4252.230 kb on + strand, within DZA65_RS19635at 4252.230 kb on + strand, within DZA65_RS19635at 4252.231 kb on - strand, within DZA65_RS19635at 4252.231 kb on - strand, within DZA65_RS19635at 4252.231 kb on - strand, within DZA65_RS19635at 4252.326 kb on + strand, within DZA65_RS19635at 4252.326 kb on + strand, within DZA65_RS19635at 4252.326 kb on + strand, within DZA65_RS19635at 4252.380 kb on + strand, within DZA65_RS19635at 4252.488 kb on + strand, within DZA65_RS19635at 4252.488 kb on + strand, within DZA65_RS19635at 4252.488 kb on + strand, within DZA65_RS19635at 4252.488 kb on + strand, within DZA65_RS19635at 4252.488 kb on + strand, within DZA65_RS19635at 4252.653 kb on + strandat 4252.653 kb on + strandat 4252.656 kb on + strandat 4252.656 kb on + strandat 4252.656 kb on + strandat 4252.656 kb on + strandat 4252.694 kb on + strandat 4253.112 kb on + strandat 4253.113 kb on - strandat 4253.123 kb on + strandat 4253.123 kb on + strandat 4253.123 kb on + strandat 4253.124 kb on - strandat 4253.124 kb on - strandat 4253.124 kb on - strandat 4253.124 kb on - strandat 4253.124 kb on - strandat 4253.124 kb on - strandat 4253.127 kb on + strandat 4253.127 kb on + strandat 4253.127 kb on + strandat 4253.127 kb on + strandat 4253.127 kb on + strandat 4253.127 kb on + strandat 4253.127 kb on + strandat 4253.128 kb on - strandat 4253.128 kb on - strandat 4253.128 kb on - strandat 4253.141 kb on + strandat 4253.236 kb on - strandat 4253.236 kb on - strandat 4253.304 kb on - strand, within DZA65_RS19645at 4253.372 kb on - strand, within DZA65_RS19645at 4253.422 kb on + strand, within DZA65_RS19645at 4253.422 kb on + strand, within DZA65_RS19645at 4253.422 kb on + strand, within DZA65_RS19645at 4253.422 kb on + strand, within DZA65_RS19645at 4253.423 kb on - strand, within DZA65_RS19645at 4253.423 kb on - strand, within DZA65_RS19645at 4253.426 kb on + strand, within DZA65_RS19645at 4253.427 kb on - strand, within DZA65_RS19645at 4253.445 kb on - strand, within DZA65_RS19645at 4253.474 kb on + strand, within DZA65_RS19645at 4253.476 kb on + strand, within DZA65_RS19645at 4253.476 kb on + strand, within DZA65_RS19645at 4253.477 kb on - strand, within DZA65_RS19645at 4253.524 kb on + strand, within DZA65_RS19645at 4253.524 kb on + strand, within DZA65_RS19645at 4253.524 kb on + strand, within DZA65_RS19645at 4253.524 kb on + strand, within DZA65_RS19645at 4253.525 kb on - strand, within DZA65_RS19645at 4253.525 kb on - strand, within DZA65_RS19645at 4253.525 kb on - strand, within DZA65_RS19645at 4253.525 kb on - strand, within DZA65_RS19645at 4253.525 kb on - strand, within DZA65_RS19645at 4253.533 kb on + strand, within DZA65_RS19645at 4253.534 kb on - strand, within DZA65_RS19645at 4253.534 kb on - strand, within DZA65_RS19645at 4253.534 kb on - strand, within DZA65_RS19645at 4253.534 kb on - strand, within DZA65_RS19645at 4253.534 kb on - strand, within DZA65_RS19645at 4253.534 kb on - strand, within DZA65_RS19645at 4253.559 kb on - strand, within DZA65_RS19645at 4253.559 kb on - strand, within DZA65_RS19645at 4253.559 kb on - strand, within DZA65_RS19645at 4253.559 kb on - strand, within DZA65_RS19645at 4253.563 kb on + strand, within DZA65_RS19645at 4253.563 kb on + strandat 4253.563 kb on + strand, within DZA65_RS19645at 4253.563 kb on + strand, within DZA65_RS19645at 4253.563 kb on + strand, within DZA65_RS19645at 4253.564 kb on - strand, within DZA65_RS19645at 4253.564 kb on - strand, within DZA65_RS19645at 4253.564 kb on - strand, within DZA65_RS19645at 4253.564 kb on - strand, within DZA65_RS19645at 4253.564 kb on - strand, within DZA65_RS19645at 4253.584 kb on + strand, within DZA65_RS19645at 4253.584 kb on + strand, within DZA65_RS19645at 4253.584 kb on + strand, within DZA65_RS19645at 4253.584 kb on + strand, within DZA65_RS19645at 4253.584 kb on + strand, within DZA65_RS19645at 4253.584 kb on + strand, within DZA65_RS19645at 4253.585 kb on - strand, within DZA65_RS19645at 4253.585 kb on - strand, within DZA65_RS19645at 4253.585 kb on - strand, within DZA65_RS19645at 4253.585 kb on - strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.653 kb on + strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.654 kb on - strand, within DZA65_RS19645at 4253.657 kb on + strand, within DZA65_RS19645at 4253.657 kb on + strand, within DZA65_RS19645at 4253.657 kb on + strand, within DZA65_RS19645at 4253.657 kb on + strand, within DZA65_RS19645at 4253.658 kb on - strand, within DZA65_RS19645at 4253.658 kb on - strand, within DZA65_RS19645

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,251,170 + DZA65_RS19630 0.11 +0.3
4,251,170 + DZA65_RS19630 0.11 +0.4
4,251,170 + DZA65_RS19630 0.11 +0.1
4,251,170 + DZA65_RS19630 0.11 -0.5
4,251,170 + DZA65_RS19630 0.11 +1.0
4,251,170 + DZA65_RS19630 0.11 -0.7
4,251,170 + DZA65_RS19630 0.11 -0.3
4,251,170 + DZA65_RS19630 0.11 +0.9
4,251,170 + DZA65_RS19630 0.11 -0.5
4,251,170 + DZA65_RS19630 0.11 -0.0
4,251,171 - DZA65_RS19630 0.11 -1.4
4,251,171 - DZA65_RS19630 0.11 -0.8
4,251,171 - DZA65_RS19630 0.11 -0.7
4,251,171 - DZA65_RS19630 0.11 +1.2
4,251,171 - DZA65_RS19630 0.11 +0.9
4,251,171 - DZA65_RS19630 0.11 +0.3
4,251,171 - DZA65_RS19630 0.11 -0.3
4,251,171 - DZA65_RS19630 0.11 -0.7
4,251,192 - DZA65_RS19630 0.14 -1.9
4,251,226 + DZA65_RS19630 0.17 +0.3
4,251,248 + DZA65_RS19630 0.19 +1.1
4,251,249 - DZA65_RS19630 0.20 +0.1
4,251,306 + DZA65_RS19630 0.26 -0.7
4,251,307 - DZA65_RS19630 0.26 +0.9
4,251,307 - DZA65_RS19630 0.26 +0.0
4,251,307 - DZA65_RS19630 0.26 +1.3
4,251,307 - DZA65_RS19630 0.26 +0.2
4,251,350 + DZA65_RS19630 0.30 +1.2
4,251,350 + DZA65_RS19630 0.30 -0.4
4,251,350 + DZA65_RS19630 0.30 +2.3
4,251,350 + DZA65_RS19630 0.30 +0.7
4,251,351 - DZA65_RS19630 0.30 +1.5
4,251,351 - DZA65_RS19630 0.30 -0.1
4,251,359 + DZA65_RS19630 0.31 -0.7
4,251,359 + DZA65_RS19630 0.31 -0.1
4,251,359 + DZA65_RS19630 0.31 -0.8
4,251,359 + DZA65_RS19630 0.31 -0.4
4,251,360 - DZA65_RS19630 0.31 -0.3
4,251,360 - DZA65_RS19630 0.31 +0.7
4,251,360 - DZA65_RS19630 0.31 -0.3
4,251,360 - DZA65_RS19630 0.31 -0.1
4,251,360 - DZA65_RS19630 0.31 -0.2
4,251,360 - DZA65_RS19630 0.31 -2.1
4,251,360 - DZA65_RS19630 0.31 +0.2
4,251,360 - DZA65_RS19630 0.31 -0.5
4,251,361 + DZA65_RS19630 0.31 +0.7
4,251,362 - DZA65_RS19630 0.31 -0.5
4,251,362 - DZA65_RS19630 0.31 -0.9
4,251,659 + DZA65_RS19630 0.63 +0.6
4,251,659 + DZA65_RS19630 0.63 -0.1
4,251,660 - DZA65_RS19630 0.63 -0.3
4,251,693 + DZA65_RS19630 0.66 -0.1
4,251,722 + DZA65_RS19630 0.69 -0.5
4,251,722 + DZA65_RS19630 0.69 +1.7
4,251,722 + DZA65_RS19630 0.69 -1.3
4,251,950 + +1.3
4,251,950 + -0.1
4,252,019 + +0.6
4,252,047 + -1.1
4,252,047 + +0.7
4,252,047 + -0.9
4,252,047 + +0.6
4,252,047 + +0.2
4,252,047 + +0.6
4,252,047 + +0.8
4,252,048 - -0.0
4,252,048 - +0.1
4,252,048 - -0.9
4,252,048 - -1.4
4,252,048 - -1.2
4,252,048 - +1.3
4,252,048 - +0.1
4,252,048 - -0.7
4,252,109 + +0.3
4,252,113 - +1.7
4,252,113 - +0.4
4,252,113 - +1.4
4,252,127 + +1.0
4,252,127 + -1.9
4,252,158 + -0.3
4,252,158 + -0.8
4,252,158 + +0.3
4,252,158 + -0.9
4,252,158 + +0.1
4,252,192 + DZA65_RS19635 0.13 +0.9
4,252,192 + DZA65_RS19635 0.13 +2.7
4,252,192 + DZA65_RS19635 0.13 +0.0
4,252,192 + DZA65_RS19635 0.13 -0.1
4,252,192 + DZA65_RS19635 0.13 +0.9
4,252,192 + DZA65_RS19635 0.13 +1.7
4,252,192 + DZA65_RS19635 0.13 -0.6
4,252,192 + DZA65_RS19635 0.13 +0.5
4,252,230 + DZA65_RS19635 0.20 -0.0
4,252,230 + DZA65_RS19635 0.20 +0.5
4,252,230 + DZA65_RS19635 0.20 -1.1
4,252,231 - DZA65_RS19635 0.20 +2.5
4,252,231 - DZA65_RS19635 0.20 +0.2
4,252,231 - DZA65_RS19635 0.20 +0.3
4,252,326 + DZA65_RS19635 0.37 -2.3
4,252,326 + DZA65_RS19635 0.37 -0.6
4,252,326 + DZA65_RS19635 0.37 +0.4
4,252,380 + DZA65_RS19635 0.46 -0.7
4,252,488 + DZA65_RS19635 0.65 -0.7
4,252,488 + DZA65_RS19635 0.65 -0.3
4,252,488 + DZA65_RS19635 0.65 -1.8
4,252,488 + DZA65_RS19635 0.65 +1.6
4,252,488 + DZA65_RS19635 0.65 +0.7
4,252,653 + +0.3
4,252,653 + -0.1
4,252,656 + +1.5
4,252,656 + +1.4
4,252,656 + +0.0
4,252,656 + -2.4
4,252,694 + -1.1
4,253,112 + -1.7
4,253,113 - +0.1
4,253,123 + -0.2
4,253,123 + +0.3
4,253,123 + +2.4
4,253,124 - -1.0
4,253,124 - -0.9
4,253,124 - -0.4
4,253,124 - +0.3
4,253,124 - +0.2
4,253,124 - +0.5
4,253,127 + -1.7
4,253,127 + -0.7
4,253,127 + -0.7
4,253,127 + +0.4
4,253,127 + +0.1
4,253,127 + -1.2
4,253,127 + -0.1
4,253,128 - -0.8
4,253,128 - +0.7
4,253,128 - +3.2
4,253,141 + +0.5
4,253,236 - +0.4
4,253,236 - -0.9
4,253,304 - DZA65_RS19645 0.11 -0.2
4,253,372 - DZA65_RS19645 0.18 -0.7
4,253,422 + DZA65_RS19645 0.23 -0.6
4,253,422 + DZA65_RS19645 0.23 +1.6
4,253,422 + DZA65_RS19645 0.23 -0.4
4,253,422 + DZA65_RS19645 0.23 -0.1
4,253,423 - DZA65_RS19645 0.23 +1.3
4,253,423 - DZA65_RS19645 0.23 +0.5
4,253,426 + DZA65_RS19645 0.23 +0.9
4,253,427 - DZA65_RS19645 0.23 +1.7
4,253,445 - DZA65_RS19645 0.25 +0.6
4,253,474 + DZA65_RS19645 0.28 -1.7
4,253,476 + DZA65_RS19645 0.28 -1.9
4,253,476 + DZA65_RS19645 0.28 +1.0
4,253,477 - DZA65_RS19645 0.28 -1.1
4,253,524 + DZA65_RS19645 0.33 -0.7
4,253,524 + DZA65_RS19645 0.33 +1.5
4,253,524 + DZA65_RS19645 0.33 +0.6
4,253,524 + DZA65_RS19645 0.33 -1.4
4,253,525 - DZA65_RS19645 0.33 -1.7
4,253,525 - DZA65_RS19645 0.33 +0.9
4,253,525 - DZA65_RS19645 0.33 -1.1
4,253,525 - DZA65_RS19645 0.33 -1.9
4,253,525 - DZA65_RS19645 0.33 -1.3
4,253,533 + DZA65_RS19645 0.34 -1.1
4,253,534 - DZA65_RS19645 0.34 -1.9
4,253,534 - DZA65_RS19645 0.34 +0.5
4,253,534 - DZA65_RS19645 0.34 -0.4
4,253,534 - DZA65_RS19645 0.34 -1.6
4,253,534 - DZA65_RS19645 0.34 -1.5
4,253,534 - DZA65_RS19645 0.34 -1.5
4,253,559 - DZA65_RS19645 0.36 -0.3
4,253,559 - DZA65_RS19645 0.36 -2.0
4,253,559 - DZA65_RS19645 0.36 +0.3
4,253,559 - DZA65_RS19645 0.36 +0.5
4,253,563 + DZA65_RS19645 0.37 -0.7
4,253,563 + +1.5
4,253,563 + DZA65_RS19645 0.37 -0.4
4,253,563 + DZA65_RS19645 0.37 -1.7
4,253,563 + DZA65_RS19645 0.37 -0.5
4,253,564 - DZA65_RS19645 0.37 -0.7
4,253,564 - DZA65_RS19645 0.37 -1.4
4,253,564 - DZA65_RS19645 0.37 -1.7
4,253,564 - DZA65_RS19645 0.37 -1.0
4,253,564 - DZA65_RS19645 0.37 +1.5
4,253,584 + DZA65_RS19645 0.39 +0.1
4,253,584 + DZA65_RS19645 0.39 +1.0
4,253,584 + DZA65_RS19645 0.39 -0.7
4,253,584 + DZA65_RS19645 0.39 -0.4
4,253,584 + DZA65_RS19645 0.39 +0.3
4,253,584 + DZA65_RS19645 0.39 -0.1
4,253,585 - DZA65_RS19645 0.39 -0.3
4,253,585 - DZA65_RS19645 0.39 -0.6
4,253,585 - DZA65_RS19645 0.39 +1.0
4,253,585 - DZA65_RS19645 0.39 -0.8
4,253,653 + DZA65_RS19645 0.46 -0.9
4,253,653 + DZA65_RS19645 0.46 +0.1
4,253,653 + DZA65_RS19645 0.46 +1.2
4,253,653 + DZA65_RS19645 0.46 -2.2
4,253,653 + DZA65_RS19645 0.46 -1.1
4,253,653 + DZA65_RS19645 0.46 -1.3
4,253,653 + DZA65_RS19645 0.46 +0.3
4,253,653 + DZA65_RS19645 0.46 +0.1
4,253,653 + DZA65_RS19645 0.46 -1.4
4,253,653 + DZA65_RS19645 0.46 -0.1
4,253,654 - DZA65_RS19645 0.46 -0.0
4,253,654 - DZA65_RS19645 0.46 +1.2
4,253,654 - DZA65_RS19645 0.46 +1.5
4,253,654 - DZA65_RS19645 0.46 -1.7
4,253,654 - DZA65_RS19645 0.46 +0.2
4,253,654 - DZA65_RS19645 0.46 -2.4
4,253,654 - DZA65_RS19645 0.46 +1.2
4,253,654 - DZA65_RS19645 0.46 -1.0
4,253,654 - DZA65_RS19645 0.46 +0.1
4,253,654 - DZA65_RS19645 0.46 -0.6
4,253,654 - DZA65_RS19645 0.46 +0.9
4,253,654 - DZA65_RS19645 0.46 -1.4
4,253,654 - DZA65_RS19645 0.46 +0.9
4,253,657 + DZA65_RS19645 0.46 +1.1
4,253,657 + DZA65_RS19645 0.46 -1.9
4,253,657 + DZA65_RS19645 0.46 +0.4
4,253,657 + DZA65_RS19645 0.46 -0.4
4,253,658 - DZA65_RS19645 0.46 -3.3
4,253,658 - DZA65_RS19645 0.46 -0.3

Or see this region's nucleotide sequence