Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19535 and DZA65_RS19540 are separated by 592 nucleotides DZA65_RS19540 and DZA65_RS19545 are separated by 303 nucleotides
DZA65_RS19535: DZA65_RS19535 - HAMP domain-containing protein, at 4,228,729 to 4,230,435
_RS19535
DZA65_RS19540: DZA65_RS19540 - phosphoglycerate dehydrogenase, at 4,231,028 to 4,232,260
_RS19540
DZA65_RS19545: DZA65_RS19545 - ribose-5-phosphate isomerase RpiA, at 4,232,564 to 4,233,226
_RS19545
Position (kb) 4231
4232
4233 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.038 kb on + strand, within DZA65_RS19535 at 4230.039 kb on - strand, within DZA65_RS19535 at 4230.039 kb on - strand, within DZA65_RS19535 at 4230.039 kb on - strand, within DZA65_RS19535 at 4230.039 kb on - strand, within DZA65_RS19535 at 4230.039 kb on - strand, within DZA65_RS19535 at 4230.039 kb on - strand, within DZA65_RS19535 at 4230.039 kb on - strand, within DZA65_RS19535 at 4230.039 kb on - strand, within DZA65_RS19535 at 4230.039 kb on - strand, within DZA65_RS19535 at 4230.099 kb on + strand, within DZA65_RS19535 at 4230.099 kb on + strand, within DZA65_RS19535 at 4230.100 kb on - strand, within DZA65_RS19535 at 4230.100 kb on - strand, within DZA65_RS19535 at 4230.100 kb on - strand, within DZA65_RS19535 at 4230.100 kb on - strand, within DZA65_RS19535 at 4230.100 kb on - strand, within DZA65_RS19535 at 4230.100 kb on - strand, within DZA65_RS19535 at 4230.100 kb on - strand, within DZA65_RS19535 at 4230.100 kb on - strand, within DZA65_RS19535 at 4230.100 kb on - strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.101 kb on + strand, within DZA65_RS19535 at 4230.102 kb on - strand, within DZA65_RS19535 at 4230.102 kb on - strand, within DZA65_RS19535 at 4230.102 kb on - strand, within DZA65_RS19535 at 4230.102 kb on - strand, within DZA65_RS19535 at 4230.102 kb on - strand, within DZA65_RS19535 at 4230.102 kb on - strand, within DZA65_RS19535 at 4230.102 kb on - strand, within DZA65_RS19535 at 4230.102 kb on - strand, within DZA65_RS19535 at 4230.102 kb on - strand, within DZA65_RS19535 at 4230.150 kb on + strand, within DZA65_RS19535 at 4230.150 kb on + strand, within DZA65_RS19535 at 4230.150 kb on + strand, within DZA65_RS19535 at 4230.150 kb on + strand, within DZA65_RS19535 at 4230.150 kb on + strand, within DZA65_RS19535 at 4230.150 kb on + strand, within DZA65_RS19535 at 4230.151 kb on - strand, within DZA65_RS19535 at 4230.151 kb on - strand, within DZA65_RS19535 at 4230.151 kb on - strand, within DZA65_RS19535 at 4230.151 kb on - strand, within DZA65_RS19535 at 4230.164 kb on + strand, within DZA65_RS19535 at 4230.300 kb on + strand at 4230.300 kb on + strand at 4230.300 kb on + strand at 4230.300 kb on + strand at 4230.301 kb on - strand at 4230.301 kb on - strand at 4230.301 kb on - strand at 4230.301 kb on - strand at 4230.301 kb on - strand at 4230.301 kb on - strand at 4230.317 kb on + strand at 4230.317 kb on + strand at 4230.317 kb on + strand at 4230.318 kb on - strand at 4230.318 kb on - strand at 4230.328 kb on - strand at 4230.358 kb on - strand at 4230.376 kb on - strand at 4230.396 kb on + strand at 4230.399 kb on + strand at 4230.399 kb on + strand at 4230.399 kb on + strand at 4230.399 kb on + strand at 4230.399 kb on + strand at 4230.400 kb on - strand at 4230.400 kb on - strand at 4230.400 kb on - strand at 4230.400 kb on - strand at 4230.400 kb on - strand at 4230.400 kb on - strand at 4230.403 kb on + strand at 4230.404 kb on - strand at 4230.404 kb on - strand at 4230.414 kb on + strand at 4230.415 kb on - strand at 4230.415 kb on - strand at 4230.455 kb on + strand at 4230.456 kb on - strand at 4230.456 kb on - strand at 4230.499 kb on + strand at 4230.499 kb on + strand at 4230.499 kb on + strand at 4230.499 kb on + strand at 4230.499 kb on + strand at 4230.499 kb on + strand at 4230.500 kb on - strand at 4230.500 kb on - strand at 4230.500 kb on - strand at 4230.500 kb on - strand at 4230.500 kb on - strand at 4230.500 kb on - strand at 4230.501 kb on + strand at 4230.501 kb on + strand at 4230.502 kb on - strand at 4230.502 kb on - strand at 4230.502 kb on - strand at 4230.657 kb on + strand at 4230.657 kb on + strand at 4230.657 kb on + strand at 4230.673 kb on + strand at 4230.673 kb on + strand at 4230.673 kb on + strand at 4230.673 kb on + strand at 4230.673 kb on + strand at 4230.674 kb on - strand at 4230.684 kb on + strand at 4230.684 kb on + strand at 4230.684 kb on + strand at 4230.684 kb on + strand at 4230.685 kb on - strand at 4230.685 kb on - strand at 4230.727 kb on + strand at 4230.727 kb on + strand at 4230.727 kb on + strand at 4230.727 kb on + strand at 4230.727 kb on + strand at 4230.727 kb on + strand at 4230.727 kb on + strand at 4230.727 kb on + strand at 4230.728 kb on - strand at 4230.728 kb on - strand at 4230.738 kb on + strand at 4230.739 kb on - strand at 4230.739 kb on - strand at 4230.800 kb on + strand at 4230.860 kb on - strand at 4230.902 kb on + strand at 4230.957 kb on + strand at 4230.957 kb on + strand at 4230.957 kb on + strand at 4230.958 kb on - strand at 4230.958 kb on - strand at 4230.991 kb on + strand at 4230.991 kb on + strand at 4231.123 kb on - strand at 4231.149 kb on + strand at 4231.149 kb on + strand at 4231.150 kb on - strand at 4231.150 kb on - strand at 4231.207 kb on + strand, within DZA65_RS19540 at 4231.400 kb on + strand, within DZA65_RS19540 at 4231.400 kb on + strand, within DZA65_RS19540 at 4231.400 kb on + strand at 4231.401 kb on - strand at 4231.401 kb on - strand, within DZA65_RS19540 at 4231.401 kb on - strand, within DZA65_RS19540 at 4231.401 kb on - strand, within DZA65_RS19540 at 4231.401 kb on - strand, within DZA65_RS19540 at 4231.401 kb on - strand, within DZA65_RS19540 at 4231.401 kb on - strand, within DZA65_RS19540 at 4231.401 kb on - strand, within DZA65_RS19540 at 4231.401 kb on - strand, within DZA65_RS19540 at 4231.401 kb on - strand, within DZA65_RS19540 at 4231.561 kb on + strand, within DZA65_RS19540 at 4231.661 kb on + strand, within DZA65_RS19540 at 4231.661 kb on + strand, within DZA65_RS19540 at 4231.661 kb on + strand, within DZA65_RS19540 at 4231.662 kb on - strand, within DZA65_RS19540 at 4231.662 kb on - strand, within DZA65_RS19540 at 4231.718 kb on - strand, within DZA65_RS19540 at 4231.722 kb on + strand, within DZA65_RS19540 at 4231.723 kb on - strand, within DZA65_RS19540 at 4231.728 kb on + strand, within DZA65_RS19540 at 4231.728 kb on + strand, within DZA65_RS19540 at 4231.729 kb on - strand, within DZA65_RS19540 at 4231.729 kb on - strand at 4231.729 kb on - strand, within DZA65_RS19540 at 4231.793 kb on - strand, within DZA65_RS19540 at 4231.849 kb on + strand, within DZA65_RS19540 at 4231.849 kb on + strand, within DZA65_RS19540 at 4231.849 kb on + strand, within DZA65_RS19540 at 4232.006 kb on - strand, within DZA65_RS19540 at 4232.146 kb on + strand at 4232.147 kb on - strand at 4232.151 kb on + strand at 4232.151 kb on + strand at 4232.151 kb on + strand at 4232.151 kb on + strand at 4232.152 kb on - strand at 4232.166 kb on + strand at 4232.204 kb on + strand at 4232.228 kb on - strand at 4232.228 kb on - strand at 4232.228 kb on - strand at 4232.250 kb on - strand at 4232.250 kb on - strand at 4232.271 kb on + strand at 4232.272 kb on - strand at 4232.288 kb on + strand at 4232.288 kb on + strand at 4232.288 kb on + strand at 4232.289 kb on - strand at 4232.289 kb on - strand at 4232.290 kb on + strand at 4232.290 kb on + strand at 4232.290 kb on + strand at 4232.291 kb on - strand at 4232.291 kb on - strand at 4232.320 kb on + strand at 4232.345 kb on - strand at 4232.407 kb on - strand at 4232.416 kb on + strand at 4232.417 kb on - strand at 4232.461 kb on + strand at 4232.461 kb on + strand at 4232.464 kb on + strand at 4232.464 kb on + strand at 4232.464 kb on + strand at 4232.465 kb on - strand at 4232.465 kb on - strand at 4232.465 kb on - strand at 4232.465 kb on - strand at 4233.243 kb on + strand at 4233.244 kb on - strand at 4233.244 kb on - strand at 4233.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,230,038 + DZA65_RS19535 0.77 -1.5 4,230,038 + DZA65_RS19535 0.77 +2.4 4,230,038 + DZA65_RS19535 0.77 -1.1 4,230,038 + DZA65_RS19535 0.77 -0.1 4,230,038 + DZA65_RS19535 0.77 +0.9 4,230,038 + DZA65_RS19535 0.77 -1.7 4,230,038 + DZA65_RS19535 0.77 -0.5 4,230,038 + DZA65_RS19535 0.77 +0.5 4,230,038 + DZA65_RS19535 0.77 +1.0 4,230,038 + DZA65_RS19535 0.77 -0.7 4,230,039 - DZA65_RS19535 0.77 -0.4 4,230,039 - DZA65_RS19535 0.77 -0.7 4,230,039 - DZA65_RS19535 0.77 -2.5 4,230,039 - DZA65_RS19535 0.77 -0.4 4,230,039 - DZA65_RS19535 0.77 -0.7 4,230,039 - DZA65_RS19535 0.77 +0.4 4,230,039 - DZA65_RS19535 0.77 -0.1 4,230,039 - DZA65_RS19535 0.77 -0.5 4,230,039 - DZA65_RS19535 0.77 +0.8 4,230,099 + DZA65_RS19535 0.80 -1.3 4,230,099 + DZA65_RS19535 0.80 +0.3 4,230,100 - DZA65_RS19535 0.80 +0.9 4,230,100 - DZA65_RS19535 0.80 +0.4 4,230,100 - DZA65_RS19535 0.80 +0.5 4,230,100 - DZA65_RS19535 0.80 -0.7 4,230,100 - DZA65_RS19535 0.80 -1.1 4,230,100 - DZA65_RS19535 0.80 -1.3 4,230,100 - DZA65_RS19535 0.80 -1.7 4,230,100 - DZA65_RS19535 0.80 +0.6 4,230,100 - DZA65_RS19535 0.80 -1.4 4,230,101 + DZA65_RS19535 0.80 +0.1 4,230,101 + DZA65_RS19535 0.80 -0.1 4,230,101 + DZA65_RS19535 0.80 +1.4 4,230,101 + DZA65_RS19535 0.80 -0.4 4,230,101 + DZA65_RS19535 0.80 -1.7 4,230,101 + DZA65_RS19535 0.80 -0.8 4,230,101 + DZA65_RS19535 0.80 -1.1 4,230,101 + DZA65_RS19535 0.80 +1.0 4,230,101 + DZA65_RS19535 0.80 +0.2 4,230,101 + DZA65_RS19535 0.80 -0.5 4,230,102 - DZA65_RS19535 0.80 -0.1 4,230,102 - DZA65_RS19535 0.80 -1.8 4,230,102 - DZA65_RS19535 0.80 -0.9 4,230,102 - DZA65_RS19535 0.80 +0.0 4,230,102 - DZA65_RS19535 0.80 +0.6 4,230,102 - DZA65_RS19535 0.80 -0.7 4,230,102 - DZA65_RS19535 0.80 +0.5 4,230,102 - DZA65_RS19535 0.80 -0.3 4,230,102 - DZA65_RS19535 0.80 +0.2 4,230,150 + DZA65_RS19535 0.83 -0.2 4,230,150 + DZA65_RS19535 0.83 +0.1 4,230,150 + DZA65_RS19535 0.83 -2.0 4,230,150 + DZA65_RS19535 0.83 -0.4 4,230,150 + DZA65_RS19535 0.83 -0.0 4,230,150 + DZA65_RS19535 0.83 -1.7 4,230,151 - DZA65_RS19535 0.83 +1.6 4,230,151 - DZA65_RS19535 0.83 -1.3 4,230,151 - DZA65_RS19535 0.83 +0.3 4,230,151 - DZA65_RS19535 0.83 +0.7 4,230,164 + DZA65_RS19535 0.84 +0.1 4,230,300 + -2.6 4,230,300 + -2.3 4,230,300 + -0.7 4,230,300 + +1.0 4,230,301 - -0.3 4,230,301 - +0.5 4,230,301 - -0.6 4,230,301 - -2.0 4,230,301 - +0.2 4,230,301 - -0.7 4,230,317 + -1.5 4,230,317 + +0.5 4,230,317 + +0.3 4,230,318 - -0.7 4,230,318 - +1.4 4,230,328 - +1.9 4,230,358 - -2.8 4,230,376 - -2.7 4,230,396 + -0.2 4,230,399 + +0.2 4,230,399 + -0.5 4,230,399 + +1.6 4,230,399 + -2.5 4,230,399 + +1.9 4,230,400 - +1.4 4,230,400 - -1.5 4,230,400 - +1.5 4,230,400 - +0.7 4,230,400 - -0.8 4,230,400 - -1.7 4,230,403 + +0.6 4,230,404 - -1.7 4,230,404 - -0.3 4,230,414 + +0.3 4,230,415 - +0.3 4,230,415 - -0.5 4,230,455 + +0.4 4,230,456 - -0.1 4,230,456 - -0.5 4,230,499 + +0.0 4,230,499 + +0.1 4,230,499 + -0.5 4,230,499 + -0.3 4,230,499 + +1.4 4,230,499 + +0.2 4,230,500 - +1.1 4,230,500 - +1.1 4,230,500 - +0.3 4,230,500 - +0.9 4,230,500 - +0.9 4,230,500 - -1.7 4,230,501 + -1.1 4,230,501 + -2.0 4,230,502 - +0.1 4,230,502 - +0.1 4,230,502 - +0.7 4,230,657 + +1.4 4,230,657 + -0.7 4,230,657 + -0.1 4,230,673 + +0.9 4,230,673 + +1.1 4,230,673 + -1.5 4,230,673 + +1.4 4,230,673 + -1.1 4,230,674 - +0.9 4,230,684 + -1.0 4,230,684 + -0.2 4,230,684 + -2.0 4,230,684 + -0.8 4,230,685 - -0.1 4,230,685 - +0.1 4,230,727 + -0.1 4,230,727 + -0.6 4,230,727 + -0.5 4,230,727 + -0.6 4,230,727 + +0.6 4,230,727 + -1.5 4,230,727 + +0.5 4,230,727 + +0.3 4,230,728 - -0.6 4,230,728 - +0.1 4,230,738 + +1.0 4,230,739 - +0.0 4,230,739 - +1.1 4,230,800 + +0.5 4,230,860 - +0.6 4,230,902 + +0.1 4,230,957 + -0.5 4,230,957 + -0.3 4,230,957 + -0.3 4,230,958 - +0.3 4,230,958 - +2.1 4,230,991 + +0.3 4,230,991 + -0.6 4,231,123 - -1.1 4,231,149 + -1.5 4,231,149 + -2.5 4,231,150 - -2.1 4,231,150 - -4.2 4,231,207 + DZA65_RS19540 0.15 -2.7 4,231,400 + DZA65_RS19540 0.30 -3.0 4,231,400 + DZA65_RS19540 0.30 +0.7 4,231,400 + -0.1 4,231,401 - +0.9 4,231,401 - DZA65_RS19540 0.30 -1.5 4,231,401 - DZA65_RS19540 0.30 -1.6 4,231,401 - DZA65_RS19540 0.30 -1.3 4,231,401 - DZA65_RS19540 0.30 -0.7 4,231,401 - DZA65_RS19540 0.30 -0.7 4,231,401 - DZA65_RS19540 0.30 -0.1 4,231,401 - DZA65_RS19540 0.30 -2.1 4,231,401 - DZA65_RS19540 0.30 -0.4 4,231,401 - DZA65_RS19540 0.30 -2.6 4,231,561 + DZA65_RS19540 0.43 -0.5 4,231,661 + DZA65_RS19540 0.51 -2.3 4,231,661 + DZA65_RS19540 0.51 -0.5 4,231,661 + DZA65_RS19540 0.51 -2.1 4,231,662 - DZA65_RS19540 0.51 -3.2 4,231,662 - DZA65_RS19540 0.51 -1.5 4,231,718 - DZA65_RS19540 0.56 -0.1 4,231,722 + DZA65_RS19540 0.56 -0.1 4,231,723 - DZA65_RS19540 0.56 -0.1 4,231,728 + DZA65_RS19540 0.57 -1.1 4,231,728 + DZA65_RS19540 0.57 -0.1 4,231,729 - DZA65_RS19540 0.57 -1.1 4,231,729 - +0.9 4,231,729 - DZA65_RS19540 0.57 +0.5 4,231,793 - DZA65_RS19540 0.62 -0.7 4,231,849 + DZA65_RS19540 0.67 -4.0 4,231,849 + DZA65_RS19540 0.67 -2.0 4,231,849 + DZA65_RS19540 0.67 -2.3 4,232,006 - DZA65_RS19540 0.79 -1.5 4,232,146 + -1.8 4,232,147 - -3.3 4,232,151 + -0.7 4,232,151 + -1.1 4,232,151 + -2.7 4,232,151 + -3.3 4,232,152 - -1.8 4,232,166 + -2.5 4,232,204 + -2.7 4,232,228 - -3.0 4,232,228 - -0.1 4,232,228 - -2.6 4,232,250 - -2.8 4,232,250 - -1.6 4,232,271 + -2.9 4,232,272 - +0.0 4,232,288 + -3.4 4,232,288 + -0.4 4,232,288 + -2.0 4,232,289 - +1.1 4,232,289 - +1.9 4,232,290 + -1.6 4,232,290 + -2.7 4,232,290 + -3.5 4,232,291 - -0.8 4,232,291 - +2.2 4,232,320 + -0.7 4,232,345 - +1.0 4,232,407 - +0.3 4,232,416 + -1.1 4,232,417 - +1.7 4,232,461 + +1.2 4,232,461 + +0.9 4,232,464 + -0.7 4,232,464 + -0.1 4,232,464 + -0.1 4,232,465 - +0.3 4,232,465 - -1.7 4,232,465 - -0.6 4,232,465 - -0.7 4,233,243 + -1.7 4,233,244 - +0.4 4,233,244 - -1.5 4,233,248 - +0.5
Or see this region's nucleotide sequence