Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19195

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,150,567	+		DZA65_RS19190	0.58	+0.2
4,150,568	-		DZA65_RS19190	0.58	-0.2
4,150,595	+		DZA65_RS19190	0.60	-2.0
4,150,596	-		DZA65_RS19190	0.60	-0.2
4,150,596	-				+1.6
4,150,650	+		DZA65_RS19190	0.63	-0.5
4,150,650	+		DZA65_RS19190	0.63	-0.6
4,150,650	+		DZA65_RS19190	0.63	+1.2
4,150,650	+		DZA65_RS19190	0.63	-1.8
4,150,650	+		DZA65_RS19190	0.63	+0.5
4,150,650	+		DZA65_RS19190	0.63	-0.4
4,150,650	+		DZA65_RS19190	0.63	-0.2
4,150,651	-		DZA65_RS19190	0.63	-0.2
4,150,651	-		DZA65_RS19190	0.63	-0.2
4,150,651	-		DZA65_RS19190	0.63	-1.6
4,150,651	-		DZA65_RS19190	0.63	-0.9
4,150,651	-		DZA65_RS19190	0.63	+1.0
4,150,714	+		DZA65_RS19190	0.66	-0.5
4,150,715	-		DZA65_RS19190	0.66	-0.2
4,150,757	+		DZA65_RS19190	0.69	-0.2
4,150,757	+		DZA65_RS19190	0.69	-0.8
4,150,757	+		DZA65_RS19190	0.69	+0.4
4,150,757	+		DZA65_RS19190	0.69	+0.7
4,150,758	-		DZA65_RS19190	0.69	-1.3
4,150,759	+		DZA65_RS19190	0.69	+0.9
4,150,759	+		DZA65_RS19190	0.69	-0.4
4,150,759	+		DZA65_RS19190	0.69	-0.1
4,150,759	+		DZA65_RS19190	0.69	-0.2
4,150,759	+		DZA65_RS19190	0.69	-2.0
4,150,759	+		DZA65_RS19190	0.69	-0.5
4,150,759	+		DZA65_RS19190	0.69	+0.0
4,150,759	+		DZA65_RS19190	0.69	-1.2
4,150,759	+		DZA65_RS19190	0.69	-2.3
4,150,760	-		DZA65_RS19190	0.69	-0.4
4,150,760	-		DZA65_RS19190	0.69	+2.0
4,150,760	-		DZA65_RS19190	0.69	-1.8
4,150,760	-		DZA65_RS19190	0.69	-0.0
4,150,760	-		DZA65_RS19190	0.69	+0.4
4,150,760	-		DZA65_RS19190	0.69	-1.4
4,150,760	-		DZA65_RS19190	0.69	+0.2
4,150,760	-		DZA65_RS19190	0.69	-1.4
4,150,760	-		DZA65_RS19190	0.69	-0.8
4,151,012	+		DZA65_RS19190	0.83	-1.0
4,151,012	+		DZA65_RS19190	0.83	-1.0
4,151,044	+		DZA65_RS19190	0.84	-1.6
4,151,044	+		DZA65_RS19190	0.84	+0.6
4,151,102	+				+1.8
4,151,102	+		DZA65_RS19190	0.88	+0.8
4,151,103	-		DZA65_RS19190	0.88	+0.8
4,151,299	+				-1.3
4,151,299	+				+1.7
4,151,299	+				-1.2
4,151,299	+				-2.0
4,151,300	-				-0.6
4,151,300	-				-0.3
4,151,353	+				+0.1
4,151,354	-				-2.3
4,151,354	-				-1.2
4,151,355	+				-0.6
4,151,355	+				-1.2
4,151,381	+				+0.3
4,151,443	+				-2.2
4,151,444	-				-0.8
4,151,444	-				-0.3
4,151,468	+				-1.2
4,151,469	-				+0.1
4,151,506	+				-1.0
4,151,506	+				+0.0
4,151,506	+				-0.9
4,151,507	-				-0.8
4,151,512	+				-0.5
4,151,512	+				+0.6
4,151,512	+				-0.6
4,151,513	-				-2.3
4,151,513	-				-0.9
4,151,576	+		DZA65_RS19195	0.23	-1.8
4,151,577	-		DZA65_RS19195	0.24	-1.8
4,151,585	+		DZA65_RS19195	0.33	+0.6
4,151,586	-		DZA65_RS19195	0.35	-2.2
4,151,586	-		DZA65_RS19195	0.35	-2.0
4,151,586	-		DZA65_RS19195	0.35	-1.0
4,151,588	+		DZA65_RS19195	0.37	+0.8
4,151,588	+		DZA65_RS19195	0.37	-2.3
4,151,588	+		DZA65_RS19195	0.37	-0.8
4,151,589	-		DZA65_RS19195	0.38	+0.0
4,151,589	-		DZA65_RS19195	0.38	-2.2
4,151,591	+		DZA65_RS19195	0.40	-0.2
4,151,591	+		DZA65_RS19195	0.40	-0.6
4,151,658	+				-0.1
4,151,659	-				-2.0
4,151,659	-				-2.3
4,151,659	-				-2.4
4,151,660	+				+1.0
4,151,660	+				+0.2
4,151,660	+				-2.9
4,151,660	+				-0.2
4,151,661	-				-1.6
4,151,661	-				-0.8
4,151,749	+				-2.5
4,151,750	-				-0.2
4,151,750	-				-0.5
4,151,750	-				-1.2
4,151,752	+				-1.1
4,151,752	+				-2.0
4,151,752	+				-1.0
4,151,752	+				-1.8
4,151,753	-				-0.2
4,151,753	-				-1.9
4,151,753	-				-0.2
4,151,907	+		DZA65_RS19200	0.11	-0.6
4,151,907	+		DZA65_RS19200	0.11	-3.0
4,151,907	+		DZA65_RS19200	0.11	-1.6
4,151,907	+		DZA65_RS19200	0.11	-0.2
4,151,927	-		DZA65_RS19200	0.12	-2.5
4,151,935	+		DZA65_RS19200	0.13	-1.0
4,151,936	-		DZA65_RS19200	0.13	-2.4
4,151,975	-		DZA65_RS19200	0.15	-0.8
4,152,104	+		DZA65_RS19200	0.23	+0.2
4,152,104	+		DZA65_RS19200	0.23	-0.3
4,152,104	+		DZA65_RS19200	0.23	-2.9
4,152,104	+		DZA65_RS19200	0.23	-1.8
4,152,104	+		DZA65_RS19200	0.23	-0.4
4,152,104	+		DZA65_RS19200	0.23	-1.3
4,152,104	+		DZA65_RS19200	0.23	-1.2
4,152,104	+		DZA65_RS19200	0.23	-1.6
4,152,104	+		DZA65_RS19200	0.23	-0.5
4,152,104	+		DZA65_RS19200	0.23	-2.3
4,152,104	+		DZA65_RS19200	0.23	-0.2
4,152,104	+		DZA65_RS19200	0.23	-1.6
4,152,105	-		DZA65_RS19200	0.23	+0.2
4,152,105	-		DZA65_RS19200	0.23	-0.9
4,152,105	-		DZA65_RS19200	0.23	+0.1
4,152,105	-		DZA65_RS19200	0.23	-2.2
4,152,105	-		DZA65_RS19200	0.23	-2.4
4,152,105	-		DZA65_RS19200	0.23	-1.8
4,152,105	-		DZA65_RS19200	0.23	-2.0
4,152,105	-		DZA65_RS19200	0.23	-0.8
4,152,105	-		DZA65_RS19200	0.23	-1.2
4,152,105	-		DZA65_RS19200	0.23	-1.2
4,152,105	-		DZA65_RS19200	0.23	-1.4
4,152,125	-		DZA65_RS19200	0.25	-0.2
4,152,128	+		DZA65_RS19200	0.25	-0.5
4,152,128	+		DZA65_RS19200	0.25	-0.2
4,152,129	-		DZA65_RS19200	0.25	-0.8
4,152,198	+		DZA65_RS19200	0.29	-0.8
4,152,198	+		DZA65_RS19200	0.29	-0.7
4,152,198	+		DZA65_RS19200	0.29	+1.2
4,152,198	+		DZA65_RS19200	0.29	+0.5
4,152,199	-		DZA65_RS19200	0.29	-2.3
4,152,199	-		DZA65_RS19200	0.29	-1.8
4,152,199	-		DZA65_RS19200	0.29	-1.0
4,152,199	-		DZA65_RS19200	0.29	-2.3
4,152,199	-		DZA65_RS19200	0.29	-1.8
4,152,199	-		DZA65_RS19200	0.29	-2.1
4,152,199	-		DZA65_RS19200	0.29	-1.0
4,152,254	+		DZA65_RS19200	0.33	-1.6
4,152,255	-		DZA65_RS19200	0.33	-0.7
4,152,255	-		DZA65_RS19200	0.33	-2.2
4,152,296	+		DZA65_RS19200	0.36	-2.0
4,152,296	+		DZA65_RS19200	0.36	-0.2
4,152,296	+		DZA65_RS19200	0.36	-0.3
4,152,297	-		DZA65_RS19200	0.36	-1.2
4,152,297	-		DZA65_RS19200	0.36	-1.9
4,152,297	-		DZA65_RS19200	0.36	-2.2
4,152,319	+		DZA65_RS19200	0.37	-0.9
4,152,328	+		DZA65_RS19200	0.38	-2.1
4,152,329	-		DZA65_RS19200	0.38	-0.2
4,152,329	-		DZA65_RS19200	0.38	-0.5
4,152,388	-		DZA65_RS19200	0.41	-1.3
4,152,388	-		DZA65_RS19200	0.41	-2.4
4,152,476	-		DZA65_RS19200	0.47	-1.0
4,152,534	-		DZA65_RS19200	0.51	-0.2
4,152,604	+		DZA65_RS19200	0.55	-0.4
4,152,605	-		DZA65_RS19200	0.55	-1.2
4,152,605	-		DZA65_RS19200	0.55	-2.2