Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17575

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,787,869	+		DZA65_RS17570	0.40	-0.9
3,787,870	-		DZA65_RS17570	0.40	-1.7
3,787,870	-		DZA65_RS17570	0.40	-0.1
3,787,901	+		DZA65_RS17570	0.42	+1.8
3,787,901	+		DZA65_RS17570	0.42	-3.0
3,787,901	+		DZA65_RS17570	0.42	-1.3
3,787,902	-		DZA65_RS17570	0.42	+0.1
3,787,908	+		DZA65_RS17570	0.42	-0.8
3,787,909	-		DZA65_RS17570	0.42	+1.9
3,787,911	+		DZA65_RS17570	0.43	-0.3
3,787,911	+		DZA65_RS17570	0.43	+1.0
3,787,911	+		DZA65_RS17570	0.43	+0.9
3,787,911	+		DZA65_RS17570	0.43	+1.0
3,787,911	+		DZA65_RS17570	0.43	-3.0
3,787,911	+		DZA65_RS17570	0.43	-1.4
3,787,912	-		DZA65_RS17570	0.43	+0.1
3,787,912	-		DZA65_RS17570	0.43	-0.3
3,787,912	-		DZA65_RS17570	0.43	+0.4
3,787,912	-		DZA65_RS17570	0.43	+0.2
3,787,912	-		DZA65_RS17570	0.43	-0.9
3,787,912	-		DZA65_RS17570	0.43	-2.5
3,787,912	-		DZA65_RS17570	0.43	+0.7
3,787,915	-		DZA65_RS17570	0.43	-1.7
3,787,915	-		DZA65_RS17570	0.43	-0.1
3,787,915	-		DZA65_RS17570	0.43	+0.3
3,787,932	+		DZA65_RS17570	0.44	+0.8
3,787,959	+		DZA65_RS17570	0.46	-1.5
3,787,959	+		DZA65_RS17570	0.46	-0.9
3,787,960	-		DZA65_RS17570	0.46	+0.7
3,788,102	+		DZA65_RS17570	0.55	-0.1
3,788,102	+		DZA65_RS17570	0.55	-1.1
3,788,103	-		DZA65_RS17570	0.55	-0.0
3,788,103	-		DZA65_RS17570	0.55	+0.3
3,788,103	-		DZA65_RS17570	0.55	-0.9
3,788,103	-		DZA65_RS17570	0.55	-1.0
3,788,132	+		DZA65_RS17570	0.56	-2.8
3,788,140	+		DZA65_RS17570	0.57	-0.1
3,788,140	+		DZA65_RS17570	0.57	+1.0
3,788,141	-		DZA65_RS17570	0.57	-0.1
3,788,141	-		DZA65_RS17570	0.57	-0.8
3,788,141	-		DZA65_RS17570	0.57	-1.9
3,788,208	+		DZA65_RS17570	0.61	-0.1
3,788,228	+		DZA65_RS17570	0.62	-1.5
3,788,228	+		DZA65_RS17570	0.62	+0.7
3,788,229	-		DZA65_RS17570	0.62	-1.1
3,788,264	+		DZA65_RS17570	0.65	+1.0
3,788,264	+		DZA65_RS17570	0.65	-0.8
3,788,264	+		DZA65_RS17570	0.65	-3.3
3,788,265	-		DZA65_RS17570	0.65	+1.1
3,788,335	+		DZA65_RS17570	0.69	+0.7
3,788,335	+				+0.7
3,788,360	+		DZA65_RS17570	0.71	-0.1
3,788,360	+		DZA65_RS17570	0.71	+0.4
3,788,360	+		DZA65_RS17570	0.71	+0.2
3,788,361	-		DZA65_RS17570	0.71	-0.7
3,788,426	+		DZA65_RS17570	0.75	-0.3
3,788,427	-		DZA65_RS17570	0.75	+0.1
3,788,434	+		DZA65_RS17570	0.75	-0.7
3,788,434	+		DZA65_RS17570	0.75	+2.0
3,788,434	+		DZA65_RS17570	0.75	-0.1
3,788,435	-		DZA65_RS17570	0.75	-0.2
3,788,435	-		DZA65_RS17570	0.75	+0.2
3,788,435	-		DZA65_RS17570	0.75	-0.3
3,788,435	-		DZA65_RS17570	0.75	+2.2
3,788,435	-		DZA65_RS17570	0.75	-1.6
3,788,453	+		DZA65_RS17570	0.76	-0.4
3,788,453	+		DZA65_RS17570	0.76	+0.2
3,788,453	+		DZA65_RS17570	0.76	-0.9
3,788,453	+				+0.7
3,788,453	+		DZA65_RS17570	0.76	-0.2
3,788,453	+		DZA65_RS17570	0.76	-0.7
3,788,453	+		DZA65_RS17570	0.76	-0.1
3,788,453	+		DZA65_RS17570	0.76	-0.8
3,788,453	+		DZA65_RS17570	0.76	-0.3
3,788,453	+		DZA65_RS17570	0.76	+0.7
3,788,453	+		DZA65_RS17570	0.76	-0.1
3,788,453	+		DZA65_RS17570	0.76	-0.0
3,788,453	+		DZA65_RS17570	0.76	-1.7
3,788,454	-		DZA65_RS17570	0.77	-0.3
3,788,454	-		DZA65_RS17570	0.77	-0.3
3,788,454	-		DZA65_RS17570	0.77	-0.9
3,788,457	+		DZA65_RS17570	0.77	-0.1
3,788,457	+		DZA65_RS17570	0.77	+0.6
3,788,457	+		DZA65_RS17570	0.77	-2.2
3,788,457	+		DZA65_RS17570	0.77	+0.3
3,788,458	-		DZA65_RS17570	0.77	-0.5
3,788,458	-		DZA65_RS17570	0.77	-0.6
3,788,458	-		DZA65_RS17570	0.77	-1.5
3,788,490	+		DZA65_RS17570	0.79	-1.3
3,788,502	+		DZA65_RS17570	0.80	-1.0
3,788,502	+		DZA65_RS17570	0.80	+0.2
3,788,502	+		DZA65_RS17570	0.80	-0.7
3,788,503	-		DZA65_RS17570	0.80	+1.3
3,788,503	-		DZA65_RS17570	0.80	-2.0
3,788,507	+		DZA65_RS17570	0.80	+3.6
3,788,507	+		DZA65_RS17570	0.80	-0.2
3,788,507	+		DZA65_RS17570	0.80	-0.0
3,788,507	+		DZA65_RS17570	0.80	-1.7
3,788,508	-		DZA65_RS17570	0.80	-0.2
3,788,508	-		DZA65_RS17570	0.80	-1.7
3,788,544	+		DZA65_RS17570	0.82	-0.3
3,788,544	+		DZA65_RS17570	0.82	+1.7
3,788,544	+		DZA65_RS17570	0.82	-1.1
3,788,544	+		DZA65_RS17570	0.82	-0.9
3,788,545	-		DZA65_RS17570	0.82	-0.0
3,788,545	-		DZA65_RS17570	0.82	-1.5
3,788,652	+		DZA65_RS17570	0.89	+2.7
3,788,652	+		DZA65_RS17570	0.89	+0.7
3,788,652	+		DZA65_RS17570	0.89	-0.6
3,788,831	+				-2.7
3,788,831	+				+1.8
3,788,831	+				-0.7
3,788,831	+				-1.1
3,788,832	-				-0.7
3,788,855	+				+1.0
3,788,855	+				-0.9
3,788,855	+				-0.9
3,788,855	+				+2.8
3,788,855	+				-1.7
3,788,855	+				-0.8
3,788,855	+				+0.1
3,788,855	+				-0.9
3,788,856	-				+1.0
3,788,856	-				-0.8
3,788,856	-				+0.8
3,788,856	-				-1.3
3,788,856	-				-1.3
3,788,856	-				+0.8
3,788,856	-				-1.9
3,788,856	-				-1.9
3,788,856	-				+0.4
3,788,863	-				-1.3
3,788,885	+				+0.5
3,788,885	+				-0.3
3,788,885	+				+1.8
3,788,885	+				-0.7
3,788,885	+				+1.0
3,788,885	+				+0.2
3,788,885	+				-1.0
3,788,885	+				-0.2
3,788,885	+				-1.5
3,788,885	+				-1.7
3,788,886	-				+0.7
3,788,886	-				+1.7
3,788,886	-				+0.4
3,788,886	-				+0.4
3,788,886	-				-1.7
3,788,886	-				+1.0
3,788,907	+				+0.6
3,788,908	-				-0.2
3,788,914	-				-1.0
3,789,038	+		DZA65_RS17575	0.21	-0.6
3,789,039	-		DZA65_RS17575	0.21	+0.0
3,789,254	+		DZA65_RS17575	0.43	+0.9
3,789,254	+		DZA65_RS17575	0.43	-0.7
3,789,254	+		DZA65_RS17575	0.43	-0.9
3,789,254	+		DZA65_RS17575	0.43	+0.0
3,789,255	-		DZA65_RS17575	0.43	+0.1
3,789,255	-		DZA65_RS17575	0.43	-1.1
3,789,255	-		DZA65_RS17575	0.43	-0.9
3,789,255	-		DZA65_RS17575	0.43	-0.5
3,789,262	+		DZA65_RS17575	0.44	-1.7
3,789,263	-		DZA65_RS17575	0.44	+0.8
3,789,263	-		DZA65_RS17575	0.44	-0.7
3,789,327	+		DZA65_RS17575	0.51	+0.4
3,789,439	+		DZA65_RS17575	0.63	-1.3
3,789,439	+		DZA65_RS17575	0.63	-0.6
3,789,439	+		DZA65_RS17575	0.63	+1.1
3,789,439	+		DZA65_RS17575	0.63	-0.1
3,789,439	+		DZA65_RS17575	0.63	+0.3
3,789,440	-		DZA65_RS17575	0.63	+0.1
3,789,440	-		DZA65_RS17575	0.63	+0.9
3,789,440	-		DZA65_RS17575	0.63	-0.4
3,789,440	-		DZA65_RS17575	0.63	+0.4
3,789,440	-		DZA65_RS17575	0.63	+1.0
3,789,440	-		DZA65_RS17575	0.63	-1.0
3,789,479	+		DZA65_RS17575	0.67	-0.9
3,789,479	+		DZA65_RS17575	0.67	-0.2
3,789,479	+		DZA65_RS17575	0.67	+0.4
3,789,479	+		DZA65_RS17575	0.67	-0.3
3,789,479	+		DZA65_RS17575	0.67	+1.4
3,789,479	+		DZA65_RS17575	0.67	-0.3
3,789,480	-		DZA65_RS17575	0.67	+0.2
3,789,480	-		DZA65_RS17575	0.67	-1.5
3,789,480	-		DZA65_RS17575	0.67	-0.8
3,789,481	+		DZA65_RS17575	0.67	-1.9
3,789,482	-		DZA65_RS17575	0.67	-0.3
3,789,521	-		DZA65_RS17575	0.72	+1.2
3,789,568	+		DZA65_RS17575	0.76	-0.8
3,789,569	-		DZA65_RS17575	0.77	-1.5
3,789,590	+		DZA65_RS17575	0.79	-3.2
3,789,591	-		DZA65_RS17575	0.79	+0.7
3,789,655	+		DZA65_RS17575	0.86	-0.9
3,789,656	-		DZA65_RS17575	0.86	+1.1
3,789,656	-		DZA65_RS17575	0.86	-0.9
3,789,656	-		DZA65_RS17575	0.86	+0.4
3,789,689	-		DZA65_RS17575	0.89	-2.2
3,789,689	-		DZA65_RS17575	0.89	+0.7
3,789,689	-		DZA65_RS17575	0.89	+0.9
3,789,722	+				+1.1
3,789,722	+				+2.2
3,789,722	+				-0.3
3,789,722	+				-0.5
3,789,722	+				-0.1
3,789,723	-				-0.7
3,789,723	-				+0.7
3,789,723	-				+1.0
3,789,723	-				-0.2
3,789,723	-				-1.5
3,789,755	+				-0.6
3,789,755	+				-0.8
3,789,755	+				+1.9
3,789,755	+				+1.5
3,789,756	-				+0.7
3,789,756	-				+0.3
3,789,756	-				-3.2
3,789,765	+				-0.1
3,789,765	+				-0.0
3,789,765	+				+0.5
3,789,766	-				-0.3
3,789,766	-				-0.0
3,789,766	-				-1.7
3,789,782	+				-0.2
3,789,783	-				+0.3
3,789,783	-				-0.9
3,789,793	+				-1.8
3,789,793	+				-0.9
3,789,794	-				-0.3
3,789,861	-				-1.5
3,789,861	-				-1.2
3,789,905	+		DZA65_RS17580	0.15	+0.7
3,789,906	-		DZA65_RS17580	0.15	-0.3
3,789,906	-		DZA65_RS17580	0.15	+0.1
3,789,924	+		DZA65_RS17580	0.17	-2.2
3,789,924	+		DZA65_RS17580	0.17	+0.2
3,789,924	+		DZA65_RS17580	0.17	+0.3
3,789,925	-		DZA65_RS17580	0.17	-1.1
3,789,925	-		DZA65_RS17580	0.17	-0.1
3,789,925	-		DZA65_RS17580	0.17	-0.2
3,789,926	+		DZA65_RS17580	0.17	+0.4
3,789,926	+		DZA65_RS17580	0.17	-0.3
3,789,927	-		DZA65_RS17580	0.17	-0.2
3,789,927	-		DZA65_RS17580	0.17	+0.1
3,789,927	-		DZA65_RS17580	0.17	+1.2
3,790,013	+		DZA65_RS17580	0.28	-2.3
3,790,014	-		DZA65_RS17580	0.28	+0.3
3,790,014	-		DZA65_RS17580	0.28	-1.9
3,790,014	-		DZA65_RS17580	0.28	+0.2
3,790,020	+		DZA65_RS17580	0.29	-0.5
3,790,021	-		DZA65_RS17580	0.29	+0.1
3,790,028	-		DZA65_RS17580	0.30	-1.7
3,790,028	-		DZA65_RS17580	0.30	+0.1
3,790,034	+		DZA65_RS17580	0.30	+2.2
3,790,035	-		DZA65_RS17580	0.30	+0.2
3,790,035	-		DZA65_RS17580	0.30	-0.9
3,790,035	-		DZA65_RS17580	0.30	+1.2
3,790,035	-		DZA65_RS17580	0.30	+1.1
3,790,083	+		DZA65_RS17580	0.36	+2.5
3,790,083	+		DZA65_RS17580	0.36	-2.3
3,790,121	+		DZA65_RS17580	0.41	-1.2
3,790,122	-		DZA65_RS17580	0.41	-0.6
3,790,122	-		DZA65_RS17580	0.41	-2.9
3,790,122	-		DZA65_RS17580	0.41	+0.6
3,790,133	+		DZA65_RS17580	0.42	+1.2
3,790,133	+				+1.2
3,790,133	+		DZA65_RS17580	0.42	-0.2
3,790,133	+		DZA65_RS17580	0.42	+1.0
3,790,134	-		DZA65_RS17580	0.42	-0.2
3,790,134	-		DZA65_RS17580	0.42	+0.3
3,790,180	+		DZA65_RS17580	0.48	-0.8
3,790,190	+		DZA65_RS17580	0.49	+0.1
3,790,191	-		DZA65_RS17580	0.49	-0.5
3,790,241	-		DZA65_RS17580	0.55	-0.1
3,790,253	+		DZA65_RS17580	0.57	+0.8
3,790,284	+		DZA65_RS17580	0.61	-0.8
3,790,284	+		DZA65_RS17580	0.61	+0.8
3,790,284	+		DZA65_RS17580	0.61	+0.4
3,790,284	+		DZA65_RS17580	0.61	-0.1
3,790,284	+		DZA65_RS17580	0.61	-2.3
3,790,284	+		DZA65_RS17580	0.61	-1.3
3,790,284	+		DZA65_RS17580	0.61	-0.3
3,790,284	+		DZA65_RS17580	0.61	-0.2
3,790,284	+		DZA65_RS17580	0.61	+1.9
3,790,285	-		DZA65_RS17580	0.61	+0.2
3,790,285	-		DZA65_RS17580	0.61	+0.2
3,790,285	-		DZA65_RS17580	0.61	+1.7
3,790,285	-		DZA65_RS17580	0.61	-2.9
3,790,323	+		DZA65_RS17580	0.65	+0.2
3,790,323	+		DZA65_RS17580	0.65	+2.7
3,790,323	+		DZA65_RS17580	0.65	+0.7
3,790,323	+		DZA65_RS17580	0.65	+1.2
3,790,323	+		DZA65_RS17580	0.65	+0.5
3,790,323	+		DZA65_RS17580	0.65	-0.3
3,790,323	+		DZA65_RS17580	0.65	-0.6
3,790,323	+		DZA65_RS17580	0.65	-0.4
3,790,323	+		DZA65_RS17580	0.65	+0.8
3,790,324	-		DZA65_RS17580	0.65	+0.7
3,790,324	-		DZA65_RS17580	0.65	-0.8
3,790,324	-		DZA65_RS17580	0.65	-1.9
3,790,325	+		DZA65_RS17580	0.65	-1.7
3,790,325	+		DZA65_RS17580	0.65	+0.6
3,790,325	+		DZA65_RS17580	0.65	+0.2
3,790,326	-		DZA65_RS17580	0.66	-0.5
3,790,326	-		DZA65_RS17580	0.66	-0.1
3,790,326	-		DZA65_RS17580	0.66	+0.4
3,790,349	+		DZA65_RS17580	0.68	-0.7
3,790,382	+		DZA65_RS17580	0.72	+1.0
3,790,403	+		DZA65_RS17580	0.75	+0.7
3,790,403	+		DZA65_RS17580	0.75	+0.3
3,790,403	+		DZA65_RS17580	0.75	+0.1
3,790,403	+		DZA65_RS17580	0.75	+1.0
3,790,403	+		DZA65_RS17580	0.75	-1.0
3,790,404	-		DZA65_RS17580	0.75	+0.1
3,790,404	-		DZA65_RS17580	0.75	-0.3
3,790,404	-		DZA65_RS17580	0.75	-1.7
3,790,491	+		DZA65_RS17580	0.86	-2.2
3,790,491	+		DZA65_RS17580	0.86	+0.7
3,790,492	-		DZA65_RS17580	0.86	+0.1
3,790,492	-		DZA65_RS17580	0.86	-0.7
3,790,500	-		DZA65_RS17580	0.87	-0.9
3,790,500	-		DZA65_RS17580	0.87	-0.7
3,790,580	-				-0.8
3,790,670	+				-0.5
3,790,670	+				+0.1
3,790,671	-				-0.7
3,790,683	-				+2.2
3,790,683	-				-0.1
3,790,713	+				-0.5
3,790,726	+				-1.5
3,790,726	+				-0.9
3,790,727	-				-0.3
3,790,732	-				-0.1
3,790,732	-				+0.2
3,790,732	-				+0.7