Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17345

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,738,507	+				-0.8
3,738,508	-				+1.1
3,738,508	-				+1.0
3,738,508	-				+0.4
3,738,508	-				+0.3
3,738,510	+				+0.6
3,738,511	-				-0.7
3,738,511	-				+0.6
3,738,558	+				+0.2
3,738,558	+				+0.2
3,738,558	+				+1.1
3,738,558	+				-0.4
3,738,558	+				+2.0
3,738,558	+				+0.4
3,738,558	+				-0.4
3,738,558	+				+1.4
3,738,558	+				-1.9
3,738,558	+				-1.7
3,738,558	+				+0.0
3,738,559	-				+0.6
3,738,559	-				+0.1
3,738,559	-				+0.2
3,738,559	-				-0.4
3,738,559	-				-0.0
3,738,559	-				+1.4
3,738,559	-				-0.1
3,738,559	-				-0.1
3,738,579	+				-3.9
3,738,605	+				+0.4
3,738,605	+				-0.1
3,738,606	-				-2.4
3,738,606	-				-0.8
3,738,608	+				+1.2
3,738,609	-				+0.1
3,738,609	-				+0.6
3,738,612	+				+2.6
3,738,612	+				-1.6
3,738,612	+				+1.1
3,738,613	-				+0.1
3,738,613	-				+1.4
3,738,613	-				-0.4
3,738,613	-				-2.1
3,738,683	+				+0.9
3,738,743	+				-2.4
3,738,744	-				+0.1
3,738,744	-				-0.6
3,738,754	+				-1.9
3,738,755	-				+1.6
3,738,780	+				+1.4
3,738,781	-				-1.4
3,738,781	-				+0.6
3,738,795	-				-2.7
3,738,795	-				+0.9
3,738,804	-				+0.3
3,738,804	-				+0.3
3,738,825	-		DZA65_RS17340	0.11	-0.1
3,738,835	+		DZA65_RS17340	0.14	+0.5
3,738,835	+		DZA65_RS17340	0.14	-0.1
3,738,836	-		DZA65_RS17340	0.14	+0.2
3,738,872	+		DZA65_RS17340	0.24	+1.6
3,738,873	-		DZA65_RS17340	0.25	+0.6
3,738,894	-		DZA65_RS17340	0.31	-0.2
3,738,906	-		DZA65_RS17340	0.35	-0.2
3,738,995	+		DZA65_RS17340	0.61	+1.2
3,738,995	+		DZA65_RS17340	0.61	-0.0
3,738,995	+		DZA65_RS17340	0.61	+0.6
3,738,995	+		DZA65_RS17340	0.61	+0.2
3,738,995	+		DZA65_RS17340	0.61	-0.9
3,738,995	+		DZA65_RS17340	0.61	-1.1
3,738,995	+		DZA65_RS17340	0.61	-1.1
3,738,995	+		DZA65_RS17340	0.61	+0.3
3,738,995	+		DZA65_RS17340	0.61	+0.5
3,738,995	+		DZA65_RS17340	0.61	+0.0
3,738,995	+		DZA65_RS17340	0.61	-1.0
3,738,995	+		DZA65_RS17340	0.61	+0.2
3,738,995	+		DZA65_RS17340	0.61	-0.4
3,738,996	-		DZA65_RS17340	0.61	-0.9
3,738,996	-		DZA65_RS17340	0.61	-1.4
3,738,996	-		DZA65_RS17340	0.61	-0.7
3,738,996	-		DZA65_RS17340	0.61	+1.4
3,738,996	-		DZA65_RS17340	0.61	+0.2
3,738,996	-		DZA65_RS17340	0.61	-1.2
3,738,996	-		DZA65_RS17340	0.61	-0.5
3,738,996	-		DZA65_RS17340	0.61	-0.9
3,738,996	-		DZA65_RS17340	0.61	-0.5
3,738,996	-		DZA65_RS17340	0.61	+0.4
3,738,996	-		DZA65_RS17340	0.61	+0.8
3,738,996	-		DZA65_RS17340	0.61	-1.2
3,738,999	+		DZA65_RS17340	0.62	+0.1
3,738,999	+		DZA65_RS17340	0.62	+0.2
3,738,999	+		DZA65_RS17340	0.62	+0.4
3,738,999	+		DZA65_RS17340	0.62	+0.5
3,738,999	+		DZA65_RS17340	0.62	-0.1
3,738,999	+		DZA65_RS17340	0.62	-0.6
3,738,999	+		DZA65_RS17340	0.62	-0.4
3,738,999	+		DZA65_RS17340	0.62	+0.0
3,738,999	+		DZA65_RS17340	0.62	-0.4
3,738,999	+		DZA65_RS17340	0.62	-0.4
3,738,999	+		DZA65_RS17340	0.62	+1.0
3,738,999	+		DZA65_RS17340	0.62	+0.4
3,738,999	+		DZA65_RS17340	0.62	+1.0
3,738,999	+		DZA65_RS17340	0.62	-0.8
3,738,999	+		DZA65_RS17340	0.62	+0.2
3,738,999	+		DZA65_RS17340	0.62	-2.4
3,739,000	-		DZA65_RS17340	0.62	+0.7
3,739,000	-		DZA65_RS17340	0.62	-0.5
3,739,000	-		DZA65_RS17340	0.62	-0.6
3,739,000	-		DZA65_RS17340	0.62	-0.7
3,739,000	-		DZA65_RS17340	0.62	-0.6
3,739,000	-		DZA65_RS17340	0.62	-0.0
3,739,000	-		DZA65_RS17340	0.62	+1.4
3,739,000	-		DZA65_RS17340	0.62	-1.7
3,739,000	-				+1.4
3,739,000	-		DZA65_RS17340	0.62	-1.8
3,739,000	-		DZA65_RS17340	0.62	-1.2
3,739,000	-		DZA65_RS17340	0.62	+0.4
3,739,000	-		DZA65_RS17340	0.62	-2.4
3,739,001	+		DZA65_RS17340	0.63	+1.5
3,739,047	-		DZA65_RS17340	0.76	-1.4
3,739,099	+				-2.2
3,739,100	-				-0.6
3,739,100	-				-0.9
3,739,105	+				+1.2
3,739,106	-				-0.4
3,739,106	-				+1.1
3,739,125	+				-0.6
3,739,125	+				-2.5
3,739,125	+				+0.2
3,739,126	-				-0.0
3,739,126	-				-2.2
3,739,149	+				-2.8
3,739,149	+				+1.5
3,739,149	+				-0.2
3,739,149	+				-1.8
3,739,149	+				-0.6
3,739,149	+				-0.9
3,739,149	+				+2.6
3,739,149	+				-0.6
3,739,150	-				+0.3
3,739,150	-				-0.0
3,739,150	-				-2.3
3,739,150	-				+0.1
3,739,150	-				-0.6
3,739,150	-				-1.5
3,739,150	-				-0.4
3,739,260	+				-0.1
3,739,261	-				-0.4
3,739,286	+				-0.9
3,739,286	+				+0.4
3,739,286	+				-1.0
3,739,286	+				-1.7
3,739,286	+				+0.4
3,739,286	+				-0.2
3,739,286	+				-0.1
3,739,287	-				-1.7
3,739,287	-				-0.9
3,739,287	-				-2.4
3,739,287	-				-0.0
3,739,358	-				-1.9
3,739,358	-				-2.4
3,739,358	-				-1.4
3,739,398	-				-2.5
3,739,403	+				-0.1
3,739,404	-				-2.9
3,739,448	-				-0.9
3,739,465	+				-1.3
3,739,465	+				-0.4
3,739,465	+				-0.6
3,739,466	-				-2.8
3,739,466	-				-0.5
3,739,466	-				+0.2
3,739,466	-				-1.2
3,739,467	+				-2.4
3,739,467	+				-1.1
3,739,467	+				+0.1
3,739,467	+				-0.8
3,739,467	+				-1.2
3,739,467	+				-3.5
3,739,467	+				-1.2
3,739,467	+				-2.1
3,739,467	+				+2.0
3,739,467	+				-0.9
3,739,467	+				-1.6
3,739,467	+				+0.3
3,739,467	+				-1.2
3,739,467	+				-1.1
3,739,468	-				-3.6
3,739,468	-				-1.2
3,739,468	-				-2.2
3,739,468	-				-2.1
3,739,468	-				-1.2
3,739,468	-				-1.7
3,739,468	-				-0.4
3,739,468	-				-1.9
3,739,468	-				-3.1
3,739,468	-				-0.7
3,739,489	+				-1.2
3,739,573	+				-2.8
3,739,573	+				-1.2
3,739,573	+				-1.9
3,739,573	+				-1.9
3,739,574	-				-2.4
3,739,633	+		DZA65_RS17345	0.14	-0.8
3,739,634	-		DZA65_RS17345	0.14	-2.4
3,739,683	+		DZA65_RS17345	0.18	-1.4
3,739,683	+		DZA65_RS17345	0.18	-2.8
3,739,683	+		DZA65_RS17345	0.18	-1.4
3,739,683	+		DZA65_RS17345	0.18	+0.2
3,739,683	+		DZA65_RS17345	0.18	-2.4
3,739,683	+		DZA65_RS17345	0.18	-1.7
3,739,683	+		DZA65_RS17345	0.18	-4.2
3,739,683	+		DZA65_RS17345	0.18	-1.2
3,739,683	+		DZA65_RS17345	0.18	-1.9
3,739,683	+		DZA65_RS17345	0.18	-1.8
3,739,683	+		DZA65_RS17345	0.18	-1.5
3,739,683	+		DZA65_RS17345	0.18	-2.1
3,739,684	-		DZA65_RS17345	0.18	-1.7
3,739,684	-		DZA65_RS17345	0.18	-1.4
3,739,684	-		DZA65_RS17345	0.18	-1.8
3,739,684	-		DZA65_RS17345	0.18	-2.7
3,739,684	-		DZA65_RS17345	0.18	-1.9
3,739,684	-		DZA65_RS17345	0.18	-2.8
3,739,684	-		DZA65_RS17345	0.18	-1.2
3,739,684	-		DZA65_RS17345	0.18	-1.1
3,739,684	-		DZA65_RS17345	0.18	-2.7
3,739,812	+		DZA65_RS17345	0.29	+0.6
3,739,812	+		DZA65_RS17345	0.29	-2.5
3,739,813	-		DZA65_RS17345	0.29	-2.3
3,739,813	-		DZA65_RS17345	0.29	-0.8
3,739,813	-		DZA65_RS17345	0.29	-2.7
3,739,837	-		DZA65_RS17345	0.31	-0.9
3,739,862	+		DZA65_RS17345	0.34	-2.5
3,739,863	-		DZA65_RS17345	0.34	-2.2
3,739,863	-		DZA65_RS17345	0.34	-1.9
3,739,863	-		DZA65_RS17345	0.34	-2.2
3,739,977	+		DZA65_RS17345	0.44	-2.4
3,739,977	+		DZA65_RS17345	0.44	-2.5
3,739,977	+		DZA65_RS17345	0.44	-2.3
3,739,977	+		DZA65_RS17345	0.44	-0.4
3,739,977	+		DZA65_RS17345	0.44	-2.7
3,739,978	-		DZA65_RS17345	0.44	-1.7
3,739,978	-		DZA65_RS17345	0.44	-2.3
3,739,978	-		DZA65_RS17345	0.44	-2.1
3,740,024	+		DZA65_RS17345	0.48	-1.8
3,740,024	+		DZA65_RS17345	0.48	-1.9
3,740,024	+		DZA65_RS17345	0.48	-2.2
3,740,024	+		DZA65_RS17345	0.48	+0.8
3,740,025	-		DZA65_RS17345	0.48	-2.5
3,740,025	-		DZA65_RS17345	0.48	-1.9
3,740,025	-		DZA65_RS17345	0.48	-3.4
3,740,030	+		DZA65_RS17345	0.48	+0.8
3,740,031	-		DZA65_RS17345	0.48	-1.9
3,740,061	-		DZA65_RS17345	0.51	-0.1
3,740,088	+		DZA65_RS17345	0.53	-0.4
3,740,089	-		DZA65_RS17345	0.53	-2.4
3,740,181	-		DZA65_RS17345	0.61	-1.7
3,740,250	+		DZA65_RS17345	0.67	+0.2
3,740,251	-		DZA65_RS17345	0.67	-0.6
3,740,282	+		DZA65_RS17345	0.70	-2.5
3,740,314	+		DZA65_RS17345	0.73	-2.1
3,740,314	+		DZA65_RS17345	0.73	-2.3
3,740,314	+		DZA65_RS17345	0.73	-2.5
3,740,314	+		DZA65_RS17345	0.73	-1.7
3,740,315	-		DZA65_RS17345	0.73	-0.9
3,740,315	-		DZA65_RS17345	0.73	-1.5
3,740,315	-		DZA65_RS17345	0.73	-1.7
3,740,357	+		DZA65_RS17345	0.76	-0.4
3,740,368	+		DZA65_RS17345	0.77	+0.4
3,740,368	+		DZA65_RS17345	0.77	-1.2
3,740,369	-		DZA65_RS17345	0.77	-0.9
3,740,369	-		DZA65_RS17345	0.77	+0.1
3,740,369	-		DZA65_RS17345	0.77	-2.2
3,740,496	+		DZA65_RS17345	0.88	-1.1
3,740,496	+		DZA65_RS17345	0.88	-1.5
3,740,496	+		DZA65_RS17345	0.88	-0.5
3,740,497	-		DZA65_RS17345	0.88	+1.2
3,740,497	-		DZA65_RS17345	0.88	-1.1
3,740,497	-		DZA65_RS17345	0.88	-0.4
3,740,497	-				-0.4
3,740,499	-		DZA65_RS17345	0.89	+0.1
3,740,499	-		DZA65_RS17345	0.89	-2.8
3,740,499	-				-0.4
3,740,537	+				-1.4
3,740,546	-				-0.4
3,740,561	+				-0.4
3,740,562	-				-0.2
3,740,562	-				-3.4
3,740,593	-				-1.8
3,740,640	+				-1.7
3,740,679	+				+0.6
3,740,680	-				-0.5
3,740,717	-				-0.9
3,740,717	-				-1.1
3,740,717	-				-0.0
3,740,730	-				-0.7
3,740,741	+				-1.8
3,740,744	+				+0.5
3,740,751	+				+0.1