Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17190

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,710,042	+				-0.8
3,710,042	+				-0.5
3,710,043	-				+0.9
3,710,090	+				+0.4
3,710,091	-				-0.1
3,710,142	-		DZA65_RS17185	0.10	-1.0
3,710,241	+		DZA65_RS17185	0.29	+0.4
3,710,241	+		DZA65_RS17185	0.29	-1.9
3,710,241	+		DZA65_RS17185	0.29	-0.7
3,710,241	+		DZA65_RS17185	0.29	-1.1
3,710,242	-		DZA65_RS17185	0.29	-1.0
3,710,242	-		DZA65_RS17185	0.29	-0.4
3,710,242	-		DZA65_RS17185	0.29	+0.6
3,710,247	+		DZA65_RS17185	0.30	-0.6
3,710,248	-		DZA65_RS17185	0.30	+0.4
3,710,302	-		DZA65_RS17185	0.40	+0.3
3,710,319	+		DZA65_RS17185	0.43	+0.3
3,710,319	+		DZA65_RS17185	0.43	-1.2
3,710,319	+		DZA65_RS17185	0.43	-1.0
3,710,319	+		DZA65_RS17185	0.43	-0.4
3,710,319	+		DZA65_RS17185	0.43	+0.4
3,710,319	+		DZA65_RS17185	0.43	-1.0
3,710,353	-		DZA65_RS17185	0.50	-1.2
3,710,353	-		DZA65_RS17185	0.50	+1.8
3,710,427	+		DZA65_RS17185	0.64	-1.0
3,710,428	-		DZA65_RS17185	0.64	-0.7
3,710,428	-		DZA65_RS17185	0.64	+1.7
3,710,610	+				+0.5
3,710,610	+				+0.2
3,710,611	-				-0.2
3,710,611	-				+0.3
3,710,611	-				-1.1
3,710,623	-				-0.2
3,710,623	-				+1.1
3,710,647	-				+1.6
3,710,647	-				-0.7
3,710,671	+				+0.0
3,710,671	+				-0.4
3,710,725	+				-1.4
3,710,726	-				-0.6
3,710,726	-				+0.0
3,710,727	+				+3.3
3,710,727	+				+0.3
3,710,727	+				+0.6
3,710,728	-				-0.1
3,710,728	-				+1.0
3,710,811	+				-2.7
3,710,811	+				+0.0
3,710,811	+				-0.8
3,710,811	+				+0.6
3,710,811	+				-1.0
3,710,811	+				-2.2
3,710,811	+				+1.6
3,710,811	+				+0.9
3,710,811	+				-0.0
3,710,811	+				-2.0
3,710,811	+				+1.0
3,710,811	+				-1.2
3,710,812	-				+0.6
3,710,812	-				+1.3
3,710,812	-				-0.8
3,710,813	+				+1.1
3,710,813	+				+0.6
3,710,813	+				+1.6
3,710,813	+				-2.4
3,710,814	-				+0.6
3,710,814	-				-1.7
3,710,818	+		DZA65_RS17190	0.11	-1.6
3,710,818	+		DZA65_RS17190	0.11	-1.6
3,710,818	+		DZA65_RS17190	0.11	-1.0
3,710,819	-		DZA65_RS17190	0.11	-0.2
3,710,819	-		DZA65_RS17190	0.11	-0.1
3,710,819	-		DZA65_RS17190	0.11	-1.0
3,711,009	+		DZA65_RS17190	0.53	-0.4
3,711,010	-		DZA65_RS17190	0.53	-1.7
3,711,010	-		DZA65_RS17190	0.53	+0.3
3,711,069	-		DZA65_RS17190	0.66	+0.4
3,711,141	+		DZA65_RS17190	0.82	-0.8
3,711,141	+		DZA65_RS17190	0.82	-1.6
3,711,141	+		DZA65_RS17190	0.82	+0.2
3,711,141	+		DZA65_RS17190	0.82	-1.6
3,711,142	-		DZA65_RS17190	0.82	+1.8
3,711,142	-		DZA65_RS17190	0.82	+0.3
3,711,142	-		DZA65_RS17190	0.82	-1.2
3,711,144	+		DZA65_RS17190	0.83	-1.4
3,711,144	+		DZA65_RS17190	0.83	+0.1
3,711,144	+		DZA65_RS17190	0.83	+0.8
3,711,255	+				+0.9
3,711,255	+				-0.0
3,711,256	-				-1.6
3,711,263	+				-0.4
3,711,263	+				+0.6
3,711,263	+				-1.4
3,711,263	+				-1.0
3,711,264	-				+1.0
3,711,264	-				-1.6
3,711,264	-				+0.3
3,711,299	+				+1.2
3,711,299	+				-1.0
3,711,299	+				-0.1
3,711,299	+				-0.4
3,711,299	+				-1.0
3,711,300	-				-0.3
3,711,300	-				-0.6
3,711,300	-				+2.5
3,711,309	+				+0.0
3,711,310	-				+0.1
3,711,346	+				+0.8
3,711,346	+				-0.4
3,711,346	+				+1.4
3,711,346	+				-0.6
3,711,347	-				-0.2
3,711,347	-				+0.4
3,711,347	-				+0.6
3,711,347	-				-0.2
3,711,347	-				-1.7
3,711,347	-				+1.3
3,711,362	+				+0.3
3,711,362	+				-0.4
3,711,362	+				-2.7
3,711,362	+				+2.6
3,711,362	+				-0.2
3,711,362	+				-0.7
3,711,362	+				-0.6
3,711,362	+				+1.9
3,711,363	-				-1.7
3,711,363	-				-0.2
3,711,363	-				-1.6
3,711,363	-				+0.2
3,711,363	-				+1.3
3,711,363	-				+0.6
3,711,363	-				+0.2
3,711,374	+				-0.4
3,711,374	+				-0.6
3,711,374	+				-1.4
3,711,374	+				-1.0
3,711,374	+				-0.4
3,711,374	+				-0.6
3,711,374	+				+0.3
3,711,374	+				-0.4
3,711,375	-				+1.6
3,711,375	-				+0.1
3,711,375	-				-0.6
3,711,375	-				+0.2
3,711,375	-				+2.4
3,711,375	-				-2.2
3,711,375	-				+0.6
3,711,377	+				+0.0
3,711,378	-				-1.2
3,711,378	-				-2.2
3,711,378	-				-2.0
3,711,378	-				+1.6
3,711,378	-				-0.2
3,711,587	+		DZA65_RS17195	0.64	+0.4
3,711,587	+		DZA65_RS17195	0.64	-1.4
3,711,588	-		DZA65_RS17195	0.64	-0.1
3,711,620	+		DZA65_RS17195	0.74	+1.4
3,711,621	-		DZA65_RS17195	0.74	-0.8
3,711,621	-		DZA65_RS17195	0.74	+1.9
3,711,627	+		DZA65_RS17195	0.76	-0.3
3,711,627	+		DZA65_RS17195	0.76	+0.6
3,711,627	+		DZA65_RS17195	0.76	+0.6
3,711,628	-		DZA65_RS17195	0.76	+0.6
3,711,628	-		DZA65_RS17195	0.76	-0.8
3,711,628	-		DZA65_RS17195	0.76	+1.5
3,711,628	-		DZA65_RS17195	0.76	-0.6
3,711,628	-		DZA65_RS17195	0.76	-1.4
3,711,692	+				+0.7
3,711,702	+				-1.4
3,711,702	+				-1.0
3,711,703	-				-2.4
3,711,703	-				+0.4
3,711,772	+				-0.2
3,711,785	+				-2.0
3,711,785	+				-0.1
3,711,853	+				-0.1
3,711,853	+				+0.1
3,711,891	+				+1.7
3,711,892	-				+0.3
3,712,070	+		DZA65_RS17200	0.22	-1.7
3,712,070	+		DZA65_RS17200	0.22	-0.4
3,712,088	-		DZA65_RS17200	0.24	+0.0
3,712,166	+		DZA65_RS17200	0.31	-0.5
3,712,166	+		DZA65_RS17200	0.31	-1.3
3,712,166	+		DZA65_RS17200	0.31	+0.4
3,712,166	+		DZA65_RS17200	0.31	+4.5
3,712,167	-		DZA65_RS17200	0.31	+0.6
3,712,167	-		DZA65_RS17200	0.31	-0.4
3,712,167	-		DZA65_RS17200	0.31	-0.2
3,712,167	-		DZA65_RS17200	0.31	-1.5
3,712,167	-		DZA65_RS17200	0.31	+0.3
3,712,167	-		DZA65_RS17200	0.31	+0.3
3,712,167	-		DZA65_RS17200	0.31	+1.4
3,712,182	+		DZA65_RS17200	0.33	-1.5
3,712,183	-		DZA65_RS17200	0.33	-0.0
3,712,217	+		DZA65_RS17200	0.36	+0.6
3,712,217	+		DZA65_RS17200	0.36	-0.5
3,712,218	-		DZA65_RS17200	0.36	-1.8
3,712,218	-		DZA65_RS17200	0.36	+3.6
3,712,218	-		DZA65_RS17200	0.36	-0.4
3,712,218	-		DZA65_RS17200	0.36	+0.0