Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16830

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,632,211	-		DZA65_RS16825	0.81	-1.5
3,632,256	-		DZA65_RS16825	0.84	-1.6
3,632,256	-		DZA65_RS16825	0.84	+1.7
3,632,280	+		DZA65_RS16825	0.86	-1.7
3,632,319	+		DZA65_RS16825	0.89	-0.7
3,632,319	+		DZA65_RS16825	0.89	+1.0
3,632,319	+		DZA65_RS16825	0.89	+0.8
3,632,319	+		DZA65_RS16825	0.89	-2.2
3,632,319	+		DZA65_RS16825	0.89	-0.2
3,632,320	-		DZA65_RS16825	0.89	+1.7
3,632,320	-		DZA65_RS16825	0.89	+1.0
3,632,320	-		DZA65_RS16825	0.89	+2.6
3,632,320	-		DZA65_RS16825	0.89	+1.5
3,632,320	-		DZA65_RS16825	0.89	+0.8
3,632,320	-		DZA65_RS16825	0.89	+0.8
3,632,325	+		DZA65_RS16825	0.89	-0.8
3,632,325	+		DZA65_RS16825	0.89	-1.7
3,632,326	-		DZA65_RS16825	0.89	-1.7
3,632,326	-		DZA65_RS16825	0.89	-2.5
3,632,349	+				+1.7
3,632,350	-				+0.5
3,632,369	+				+0.1
3,632,369	+				+0.8
3,632,370	-				+2.3
3,632,378	+				-1.4
3,632,378	+				-0.1
3,632,402	-				+2.6
3,632,402	-				-1.6
3,632,479	-				-0.4
3,632,509	-				-0.4
3,632,535	+				-0.2
3,632,536	-				+0.6
3,632,650	+				-1.9
3,632,660	+				+1.5
3,632,660	+				-1.3
3,632,660	+				-1.4
3,632,661	-				-0.2
3,632,674	+				-0.8
3,632,675	-				-0.4
3,632,705	+				-0.4
3,632,705	+				-0.1
3,632,706	-				+2.0
3,632,706	-				+0.3
3,632,706	-				-3.1
3,632,725	+				+1.6
3,632,725	+				+1.6
3,632,726	-				-0.2
3,632,726	-				-0.1
3,632,729	+				+1.3
3,632,730	-				-2.6
3,632,730	-				-1.7
3,632,767	+				+1.3
3,632,767	+				+0.9
3,632,784	+				+0.1
3,632,784	+				-0.4
3,632,785	-				-3.0
3,632,791	-				+0.1
3,632,812	+				+1.8
3,632,837	+				-2.2
3,632,837	+				+0.2
3,632,837	+				-1.1
3,632,837	+				+0.2
3,632,837	+				+0.9
3,632,838	-				+0.6
3,632,871	+				-2.2
3,632,871	+				-0.7
3,632,872	-				+0.6
3,633,001	+				+0.3
3,633,001	+				-1.4
3,633,001	+				+2.4
3,633,002	-				-1.0
3,633,002	-				+1.3
3,633,002	-				-0.9
3,633,002	-				+0.2
3,633,027	-				+0.7
3,633,040	+				+0.8
3,633,041	-				+0.6
3,633,118	+				+0.5
3,633,123	+				-0.6
3,633,123	+				+0.6
3,633,123	+				-1.7
3,633,123	+				-1.2
3,633,123	+				+0.6
3,633,123	+				-0.6
3,633,124	-				+0.3
3,633,173	-				+0.7
3,633,181	+				-0.2
3,633,181	+				+0.2
3,633,182	-				-1.4
3,633,186	+				+0.8
3,633,191	+				+0.7
3,633,230	+				-0.2
3,633,230	+				-1.4
3,633,230	+				-0.7
3,633,230	+				+0.8
3,633,230	+				-0.7
3,633,230	+				-0.5
3,633,230	+				-0.4
3,633,230	+				+0.3
3,633,230	+				-2.6
3,633,231	-				-2.2
3,633,231	-				-0.6
3,633,231	-				-2.2
3,633,231	-				+0.0
3,633,231	-				-1.1
3,633,231	-				+1.3
3,633,231	-				-0.1
3,633,231	-				-1.6
3,633,231	-				-0.7
3,633,324	-				-1.9
3,633,409	+				-3.0
3,633,409	+				-1.3
3,633,410	-				-2.9
3,633,410	-				-0.8
3,633,422	-				+1.1
3,633,680	+		DZA65_RS16830	0.12	-2.4
3,633,680	+		DZA65_RS16830	0.12	-2.0
3,633,680	+		DZA65_RS16830	0.12	+0.0
3,633,680	+		DZA65_RS16830	0.12	+0.9
3,633,680	+		DZA65_RS16830	0.12	-2.2
3,633,680	+		DZA65_RS16830	0.12	+0.6
3,633,680	+		DZA65_RS16830	0.12	-3.8
3,633,680	+		DZA65_RS16830	0.12	-1.3
3,633,680	+				+0.0
3,633,680	+				-2.0
3,633,680	+		DZA65_RS16830	0.12	-2.0
3,633,680	+		DZA65_RS16830	0.12	-2.7
3,633,680	+		DZA65_RS16830	0.12	+0.6
3,633,680	+		DZA65_RS16830	0.12	-0.8
3,633,680	+		DZA65_RS16830	0.12	-0.1
3,633,680	+		DZA65_RS16830	0.12	-1.0
3,633,680	+		DZA65_RS16830	0.12	-3.4
3,633,681	-		DZA65_RS16830	0.12	-1.3
3,633,681	-		DZA65_RS16830	0.12	-1.0
3,633,681	-		DZA65_RS16830	0.12	-1.5
3,633,681	-		DZA65_RS16830	0.12	-1.6
3,633,681	-		DZA65_RS16830	0.12	+0.6
3,633,681	-		DZA65_RS16830	0.12	-1.3
3,633,681	-		DZA65_RS16830	0.12	-0.2
3,633,681	-		DZA65_RS16830	0.12	-2.4
3,633,681	-		DZA65_RS16830	0.12	+1.9
3,633,681	-		DZA65_RS16830	0.12	-1.2
3,633,681	-		DZA65_RS16830	0.12	-3.3
3,633,681	-		DZA65_RS16830	0.12	-0.1
3,633,681	-		DZA65_RS16830	0.12	-2.0
3,633,681	-		DZA65_RS16830	0.12	-1.7
3,633,681	-				-1.0
3,633,684	+				-0.4
3,633,684	+		DZA65_RS16830	0.13	-1.8
3,633,685	-		DZA65_RS16830	0.13	-1.7
3,633,872	+		DZA65_RS16830	0.17	-1.1
3,633,872	+		DZA65_RS16830	0.17	-2.7
3,633,872	+		DZA65_RS16830	0.17	+0.4
3,633,872	+		DZA65_RS16830	0.17	+0.8
3,633,872	+		DZA65_RS16830	0.17	-1.7
3,633,872	+		DZA65_RS16830	0.17	-3.4
3,633,872	+		DZA65_RS16830	0.17	-2.0
3,633,873	-		DZA65_RS16830	0.17	-0.5
3,633,873	-		DZA65_RS16830	0.17	-1.2
3,633,873	-		DZA65_RS16830	0.17	-0.3
3,633,873	-		DZA65_RS16830	0.17	-1.0
3,633,873	-		DZA65_RS16830	0.17	-1.6
3,633,873	-		DZA65_RS16830	0.17	-1.7
3,633,873	-				-1.7
3,633,873	-		DZA65_RS16830	0.17	-2.0
3,633,873	-				-0.4
3,633,873	-		DZA65_RS16830	0.17	-1.8
3,633,873	-		DZA65_RS16830	0.17	-1.0
3,633,873	-		DZA65_RS16830	0.17	-1.4
3,633,873	-		DZA65_RS16830	0.17	-2.6
3,633,878	+		DZA65_RS16830	0.18	-1.7
3,633,878	+		DZA65_RS16830	0.18	+0.6
3,633,878	+		DZA65_RS16830	0.18	-1.0
3,633,879	-		DZA65_RS16830	0.18	-1.0
3,633,879	-		DZA65_RS16830	0.18	-3.0
3,633,879	-				-0.4
3,633,879	-		DZA65_RS16830	0.18	+0.1
3,633,924	+		DZA65_RS16830	0.19	-1.7
3,633,924	+		DZA65_RS16830	0.19	-2.6
3,633,924	+		DZA65_RS16830	0.19	-1.0
3,633,924	+		DZA65_RS16830	0.19	-0.8
3,633,924	+		DZA65_RS16830	0.19	-0.5
3,633,924	+		DZA65_RS16830	0.19	+1.5
3,633,924	+		DZA65_RS16830	0.19	-0.9
3,633,925	-		DZA65_RS16830	0.19	-2.4
3,633,925	-		DZA65_RS16830	0.19	-2.6
3,633,935	+		DZA65_RS16830	0.19	+0.0
3,633,935	+		DZA65_RS16830	0.19	-0.4
3,633,935	+		DZA65_RS16830	0.19	-1.4
3,633,935	+		DZA65_RS16830	0.19	-1.2
3,633,936	-		DZA65_RS16830	0.19	+0.2
3,633,936	-		DZA65_RS16830	0.19	-2.2
3,634,139	+		DZA65_RS16830	0.24	+0.0
3,634,139	+		DZA65_RS16830	0.24	-2.7
3,634,140	-		DZA65_RS16830	0.24	-1.4
3,634,140	-		DZA65_RS16830	0.24	-2.2
3,634,166	-		DZA65_RS16830	0.25	-1.4
3,634,166	-		DZA65_RS16830	0.25	-3.5
3,634,166	-		DZA65_RS16830	0.25	-2.5
3,634,190	+		DZA65_RS16830	0.26	-1.3
3,634,225	+		DZA65_RS16830	0.26	-1.6
3,634,225	+		DZA65_RS16830	0.26	-2.0
3,634,225	+		DZA65_RS16830	0.26	-0.1
3,634,226	-		DZA65_RS16830	0.26	-2.2
3,634,226	-		DZA65_RS16830	0.26	-1.0
3,634,260	+		DZA65_RS16830	0.27	-1.7
3,634,261	-		DZA65_RS16830	0.27	+1.8
3,634,293	+		DZA65_RS16830	0.28	-1.7
3,634,293	+		DZA65_RS16830	0.28	-3.1
3,634,293	+		DZA65_RS16830	0.28	-2.1
3,634,293	+		DZA65_RS16830	0.28	-0.4
3,634,294	-		DZA65_RS16830	0.28	-1.6
3,634,441	+		DZA65_RS16830	0.32	-1.2
3,634,441	+		DZA65_RS16830	0.32	-2.2
3,634,530	-		DZA65_RS16830	0.34	-2.0
3,634,530	-		DZA65_RS16830	0.34	-0.4
3,634,617	-		DZA65_RS16830	0.37	+0.2
3,634,649	+		DZA65_RS16830	0.37	+0.3
3,634,649	+		DZA65_RS16830	0.37	-1.4
3,634,650	-		DZA65_RS16830	0.37	-1.7
3,634,650	-		DZA65_RS16830	0.37	+0.4
3,634,764	-		DZA65_RS16830	0.40	-1.4
3,634,828	+		DZA65_RS16830	0.42	+0.4
3,634,828	+		DZA65_RS16830	0.42	-1.2
3,634,828	+		DZA65_RS16830	0.42	+0.6
3,634,828	+		DZA65_RS16830	0.42	-1.7
3,634,828	+		DZA65_RS16830	0.42	-0.9
3,634,828	+		DZA65_RS16830	0.42	-1.0
3,634,829	-		DZA65_RS16830	0.42	+0.6
3,634,829	-		DZA65_RS16830	0.42	-1.0
3,634,829	-		DZA65_RS16830	0.42	-0.1
3,634,829	-		DZA65_RS16830	0.42	-0.8
3,634,829	-		DZA65_RS16830	0.42	+0.0
3,634,829	-		DZA65_RS16830	0.42	-1.6
3,634,971	-		DZA65_RS16830	0.46	-0.7
3,635,020	+		DZA65_RS16830	0.47	-1.2
3,635,020	+		DZA65_RS16830	0.47	-1.9
3,635,020	+		DZA65_RS16830	0.47	+0.0
3,635,020	+		DZA65_RS16830	0.47	-1.6
3,635,020	+		DZA65_RS16830	0.47	-1.0
3,635,020	+		DZA65_RS16830	0.47	-2.2
3,635,021	-		DZA65_RS16830	0.47	-0.3
3,635,021	-		DZA65_RS16830	0.47	-1.7
3,635,021	-		DZA65_RS16830	0.47	-0.5
3,635,021	-		DZA65_RS16830	0.47	-0.8
3,635,021	-				+0.6
3,635,021	-		DZA65_RS16830	0.47	+0.6
3,635,021	-		DZA65_RS16830	0.47	-0.9
3,635,021	-		DZA65_RS16830	0.47	-1.2
3,635,021	-		DZA65_RS16830	0.47	-1.0
3,635,021	-		DZA65_RS16830	0.47	-2.0
3,635,021	-		DZA65_RS16830	0.47	+0.4
3,635,024	+		DZA65_RS16830	0.47	-0.3
3,635,024	+		DZA65_RS16830	0.47	-0.1
3,635,024	+		DZA65_RS16830	0.47	-1.3
3,635,025	-		DZA65_RS16830	0.47	+0.5
3,635,194	+		DZA65_RS16830	0.51	-1.1
3,635,194	+		DZA65_RS16830	0.51	+0.2
3,635,194	+		DZA65_RS16830	0.51	+0.6
3,635,195	-		DZA65_RS16830	0.51	+0.8
3,635,220	-		DZA65_RS16830	0.52	-1.2
3,635,220	-		DZA65_RS16830	0.52	+0.3
3,635,234	+		DZA65_RS16830	0.52	-3.6
3,635,234	+		DZA65_RS16830	0.52	-2.2
3,635,234	+		DZA65_RS16830	0.52	-0.3
3,635,235	-		DZA65_RS16830	0.52	-1.7
3,635,268	-		DZA65_RS16830	0.53	-1.4
3,635,268	-		DZA65_RS16830	0.53	-0.6
3,635,277	+		DZA65_RS16830	0.54	-1.9
3,635,277	+		DZA65_RS16830	0.54	-2.2
3,635,277	+		DZA65_RS16830	0.54	-1.8
3,635,277	+		DZA65_RS16830	0.54	-1.2
3,635,277	+		DZA65_RS16830	0.54	-2.3
3,635,277	+		DZA65_RS16830	0.54	+1.4
3,635,277	+		DZA65_RS16830	0.54	-1.5
3,635,278	-		DZA65_RS16830	0.54	-1.2
3,635,278	-		DZA65_RS16830	0.54	-2.1
3,635,278	-		DZA65_RS16830	0.54	-1.7
3,635,278	-		DZA65_RS16830	0.54	+1.0
3,635,278	-		DZA65_RS16830	0.54	-1.6
3,635,278	-		DZA65_RS16830	0.54	+0.2
3,635,278	-		DZA65_RS16830	0.54	-0.4
3,635,291	+		DZA65_RS16830	0.54	-1.2
3,635,292	-		DZA65_RS16830	0.54	+0.2
3,635,437	+		DZA65_RS16830	0.58	-0.4
3,635,437	+		DZA65_RS16830	0.58	+0.4
3,635,437	+		DZA65_RS16830	0.58	-1.0
3,635,437	+		DZA65_RS16830	0.58	+0.1
3,635,438	-		DZA65_RS16830	0.58	+0.0
3,635,438	-		DZA65_RS16830	0.58	-0.4
3,635,438	-				+1.6
3,635,438	-		DZA65_RS16830	0.58	-0.2
3,635,438	-		DZA65_RS16830	0.58	-0.4
3,635,438	-		DZA65_RS16830	0.58	-2.7
3,635,438	-		DZA65_RS16830	0.58	+0.6
3,635,438	-		DZA65_RS16830	0.58	+0.9
3,635,457	-		DZA65_RS16830	0.58	-0.3
3,635,457	-		DZA65_RS16830	0.58	-1.6
3,635,501	+		DZA65_RS16830	0.59	-0.4
3,635,786	+		DZA65_RS16830	0.67	-1.4
3,635,864	+		DZA65_RS16830	0.69	-0.6
3,635,864	+		DZA65_RS16830	0.69	-0.6
3,635,865	-		DZA65_RS16830	0.69	+0.2
3,635,870	-		DZA65_RS16830	0.69	-1.0
3,635,914	+		DZA65_RS16830	0.70	-2.2
3,635,914	+		DZA65_RS16830	0.70	+0.2
3,635,914	+		DZA65_RS16830	0.70	-1.6
3,635,914	+		DZA65_RS16830	0.70	-2.6
3,635,914	+		DZA65_RS16830	0.70	-1.4
3,635,914	+		DZA65_RS16830	0.70	-1.4
3,635,914	+		DZA65_RS16830	0.70	-0.6
3,635,915	-		DZA65_RS16830	0.70	-0.6
3,635,915	-		DZA65_RS16830	0.70	-0.2
3,635,918	+		DZA65_RS16830	0.70	+1.2
3,635,918	+		DZA65_RS16830	0.70	+1.2
3,635,919	-		DZA65_RS16830	0.70	-0.6
3,635,926	+		DZA65_RS16830	0.70	-1.9
3,635,926	+		DZA65_RS16830	0.70	+1.9
3,635,927	-		DZA65_RS16830	0.70	-0.2
3,635,994	-		DZA65_RS16830	0.72	-1.3
3,635,994	-		DZA65_RS16830	0.72	-0.8
3,635,994	-		DZA65_RS16830	0.72	+2.9
3,636,015	-		DZA65_RS16830	0.73	-1.0
3,636,015	-		DZA65_RS16830	0.73	-1.0
3,636,054	-		DZA65_RS16830	0.74	-2.7
3,636,074	+		DZA65_RS16830	0.74	-0.6
3,636,074	+		DZA65_RS16830	0.74	-0.4
3,636,074	+		DZA65_RS16830	0.74	-0.6
3,636,075	-		DZA65_RS16830	0.74	-2.3
3,636,224	+		DZA65_RS16830	0.78	-3.0
3,636,245	-		DZA65_RS16830	0.78	-1.7
3,636,245	-		DZA65_RS16830	0.78	-1.0
3,636,317	+		DZA65_RS16830	0.80	-0.1
3,636,317	+		DZA65_RS16830	0.80	-2.0
3,636,317	+		DZA65_RS16830	0.80	-1.8
3,636,317	+		DZA65_RS16830	0.80	-0.2
3,636,318	-		DZA65_RS16830	0.80	-3.1
3,636,318	-		DZA65_RS16830	0.80	-1.0
3,636,318	-		DZA65_RS16830	0.80	-1.6
3,636,318	-		DZA65_RS16830	0.80	-2.6
3,636,318	-		DZA65_RS16830	0.80	-0.6
3,636,318	-		DZA65_RS16830	0.80	-1.7
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3,636,334	+		DZA65_RS16830	0.81	-2.7
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