Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15615

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	Atlantic
				remove
3,392,565	-	DZA65_RS15605	0.55	+0.8
3,392,588	-	DZA65_RS15605	0.58	+0.1
3,392,588	-	DZA65_RS15605	0.58	-0.6
3,392,588	-	DZA65_RS15605	0.58	+0.2
3,392,868	+			-0.0
3,392,869	-			-0.4
3,392,903	-			+0.6
3,392,943	+			-0.1
3,392,944	-			+0.2
3,392,944	-			-0.5
3,392,944	-			+0.2
3,392,944	-			-0.8
3,392,962	-			+0.7
3,393,163	-	DZA65_RS15610	0.53	+1.1
3,393,163	-	DZA65_RS15610	0.53	-0.4
3,393,163	-	DZA65_RS15610	0.53	-1.8
3,393,163	-	DZA65_RS15610	0.53	+0.2
3,393,163	-			-0.1
3,393,290	+	DZA65_RS15610	0.83	-2.1
3,393,290	+	DZA65_RS15610	0.83	+0.1
3,393,291	-	DZA65_RS15610	0.83	-0.7
3,393,358	+			-1.1
3,393,399	-			-0.8
3,393,399	-			+1.6
3,393,425	+			-0.8
3,393,426	-			-1.1
3,393,446	+			-1.2
3,393,446	+			-0.3
3,393,446	+			-0.1
3,393,450	+			+1.4
3,393,450	+			-1.0
3,393,450	+			-2.1
3,393,450	+			-0.3
3,393,450	+			-1.5
3,393,450	+			-0.3
3,393,450	+			-0.2
3,393,450	+			-0.5
3,393,451	-			+0.5
3,393,451	-			+1.8
3,393,451	-			+0.5
3,393,451	-			+0.1
3,393,451	-			-2.7
3,393,451	-			-3.4
3,393,451	-			-1.1
3,393,451	-			+0.6
3,393,451	-			+0.0
3,393,451	-			+0.1
3,393,451	-			-0.2
3,393,451	-			-0.0
3,393,499	+			+0.5
3,393,500	-			-0.0
3,393,521	+	DZA65_RS15615	0.12	-1.8
3,393,521	+	DZA65_RS15615	0.12	+0.1
3,393,521	+	DZA65_RS15615	0.12	+0.8
3,393,522	-	DZA65_RS15615	0.12	+0.2
3,393,522	-	DZA65_RS15615	0.12	-0.8
3,393,522	-	DZA65_RS15615	0.12	-0.2
3,393,522	-			-1.1
3,393,673	+	DZA65_RS15615	0.26	-0.5
3,393,673	+	DZA65_RS15615	0.26	-0.5
3,393,673	+	DZA65_RS15615	0.26	-0.1
3,393,674	-	DZA65_RS15615	0.26	+0.3
3,393,681	+	DZA65_RS15615	0.27	-0.2
3,393,682	-	DZA65_RS15615	0.27	-0.5
3,393,719	+	DZA65_RS15615	0.30	-0.1
3,393,719	+	DZA65_RS15615	0.30	-1.8
3,393,785	-	DZA65_RS15615	0.37	-0.5
3,393,872	+	DZA65_RS15615	0.45	-0.2
3,393,924	-	DZA65_RS15615	0.50	-1.5
3,394,006	-	DZA65_RS15615	0.58	+1.1
3,394,046	+	DZA65_RS15615	0.61	+0.2
3,394,046	+	DZA65_RS15615	0.61	-0.7
3,394,046	+	DZA65_RS15615	0.61	+1.2
3,394,046	+	DZA65_RS15615	0.61	+1.5
3,394,046	+	DZA65_RS15615	0.61	+0.5
3,394,046	+			+1.5
3,394,046	+	DZA65_RS15615	0.61	-0.5
3,394,046	+	DZA65_RS15615	0.61	-2.2
3,394,047	-	DZA65_RS15615	0.61	-0.1
3,394,047	-	DZA65_RS15615	0.61	+0.2
3,394,047	-	DZA65_RS15615	0.61	+0.2
3,394,047	-	DZA65_RS15615	0.61	-0.0
3,394,047	-	DZA65_RS15615	0.61	-1.2
3,394,055	+	DZA65_RS15615	0.62	+0.7
3,394,056	-	DZA65_RS15615	0.62	+0.4
3,394,056	-	DZA65_RS15615	0.62	-2.5
3,394,056	-	DZA65_RS15615	0.62	-0.2
3,394,056	-	DZA65_RS15615	0.62	-2.2
3,394,127	+	DZA65_RS15615	0.69	+1.5
3,394,143	+	DZA65_RS15615	0.70	-0.1
3,394,144	-	DZA65_RS15615	0.71	+0.1
3,394,193	-	DZA65_RS15615	0.75	-0.2
3,394,203	+	DZA65_RS15615	0.76	-1.8
3,394,203	+	DZA65_RS15615	0.76	-0.1
3,394,203	+	DZA65_RS15615	0.76	-1.9
3,394,203	+	DZA65_RS15615	0.76	+0.5
3,394,204	-	DZA65_RS15615	0.76	+1.1
3,394,204	-	DZA65_RS15615	0.76	+1.1
3,394,204	-	DZA65_RS15615	0.76	+0.1
3,394,206	+	DZA65_RS15615	0.76	-0.1
3,394,206	+	DZA65_RS15615	0.76	+1.4
3,394,206	+	DZA65_RS15615	0.76	-0.7
3,394,206	+	DZA65_RS15615	0.76	-0.7
3,394,206	+	DZA65_RS15615	0.76	-0.6
3,394,206	+	DZA65_RS15615	0.76	-0.6
3,394,206	+	DZA65_RS15615	0.76	+0.6
3,394,207	-	DZA65_RS15615	0.76	-1.1
3,394,207	-	DZA65_RS15615	0.76	+1.1
3,394,207	-	DZA65_RS15615	0.76	-0.5
3,394,207	-	DZA65_RS15615	0.76	-0.2
3,394,252	-	DZA65_RS15615	0.81	-0.1
3,394,252	-	DZA65_RS15615	0.81	-1.5
3,394,328	+	DZA65_RS15615	0.88	-2.8
3,394,328	+	DZA65_RS15615	0.88	+0.5
3,394,328	+	DZA65_RS15615	0.88	-1.5
3,394,328	+	DZA65_RS15615	0.88	+0.4
3,394,328	+	DZA65_RS15615	0.88	-0.4
3,394,328	+	DZA65_RS15615	0.88	-2.9
3,394,329	-	DZA65_RS15615	0.88	+0.5
3,394,329	-	DZA65_RS15615	0.88	-0.2
3,394,329	-	DZA65_RS15615	0.88	-1.2
3,394,331	+	DZA65_RS15615	0.88	+0.9
3,394,331	+	DZA65_RS15615	0.88	-0.9
3,394,331	+	DZA65_RS15615	0.88	-0.5
3,394,331	+	DZA65_RS15615	0.88	+0.8
3,394,332	-	DZA65_RS15615	0.88	-0.2
3,394,332	-	DZA65_RS15615	0.88	+0.3
3,394,428	+			+0.1
3,394,428	+			+0.4
3,394,428	+			+0.8
3,394,429	-			-0.3
3,394,429	-			+1.5
3,394,455	+			+0.7
3,394,456	-			-0.5
3,394,456	-			+0.0
3,394,456	-			-0.7
3,394,470	+			-1.1
3,394,470	+			-3.2
3,394,471	-			+0.4
3,394,493	+			+0.4
3,394,493	+			-0.8
3,394,547	+			+0.0
3,394,547	+			+1.9
3,394,548	-			+1.3
3,394,548	-			-0.5
3,394,549	+			-1.1
3,394,549	+			-0.3
3,394,549	+			-0.3
3,394,549	+			+1.4
3,394,549	+			-0.1
3,394,549	+			-1.1
3,394,549	+			-1.7
3,394,549	+			-1.3
3,394,549	+			+0.3
3,394,549	+			+0.0
3,394,549	+			-0.0
3,394,549	+			-0.2
3,394,549	+			-1.1
3,394,549	+			-0.8
3,394,549	+			+0.5
3,394,549	+			+0.5
3,394,549	+			-0.1
3,394,549	+			-0.5
3,394,550	-			+0.2
3,394,550	-			-3.2
3,394,550	-			-0.1
3,394,550	-			+2.1
3,394,550	-			-1.1
3,394,550	-			+0.5
3,394,550	-			-0.3
3,394,550	-			-1.2
3,394,550	-			-0.3
3,394,550	-			-1.5
3,394,550	-			-0.5
3,394,550	-			-0.7
3,394,550	-			-2.3
3,394,550	-			+1.4
3,394,550	-			-0.3
3,394,550	-			-0.2
3,394,550	-			-1.1
3,394,557	+			+0.5
3,394,557	+			-0.1
3,394,557	+			-0.6
3,394,557	+			-1.1
3,394,558	-			-1.6
3,394,558	-			+0.5
3,394,558	-			-1.9
3,394,558	-			+0.0
3,394,558	-			-1.6
3,394,583	+			-0.5
3,394,583	+			-1.2
3,394,584	-			-0.5
3,394,584	-			-1.1
3,394,584	-			+0.2
3,394,584	-			-0.8
3,394,584	-			+0.3
3,394,584	-			-0.5
3,394,584	-			-0.4
3,394,584	-			+0.4
3,394,585	+			-1.0
3,394,585	+			+0.5
3,394,585	+			-0.2
3,394,585	+			-0.4
3,394,585	+			+0.4
3,394,585	+			-0.2
3,394,585	+			-2.2
3,394,585	+			-0.3
3,394,585	+			-1.3
3,394,585	+			+0.3
3,394,585	+			+0.2
3,394,585	+			-0.2
3,394,585	+			-0.3
3,394,585	+			+0.0
3,394,585	+			+0.1
3,394,585	+			-0.7
3,394,585	+			-0.7
3,394,585	+			-0.1
3,394,585	+			+0.5
3,394,585	+			+0.7
3,394,585	+			+1.0
3,394,585	+			-2.1
3,394,585	+			-0.7
3,394,585	+			-0.7
3,394,585	+			-0.2
3,394,585	+			+1.9
3,394,585	+			+0.8
3,394,585	+			-0.7
3,394,586	-			-0.5
3,394,586	-			+1.3
3,394,586	-			-0.8
3,394,586	-			+1.5
3,394,586	-			+1.0
3,394,586	-			-0.6
3,394,586	-			+1.1
3,394,586	-			-0.5
3,394,586	-			+0.3
3,394,586	-			+0.1
3,394,586	-			-1.1
3,394,586	-			-2.7
3,394,586	-			+0.1
3,394,586	-			+0.5
3,394,586	-			+0.6
3,394,586	-			+0.1
3,394,586	-			+0.1
3,394,586	-			-1.1
3,394,586	-			-0.3
3,394,586	-			-0.6
3,394,586	-			-0.8
3,394,586	-			+1.2
3,394,586	-			+1.2
3,394,586	-			+0.8
3,394,586	-			+0.5
3,394,586	-			+0.6
3,394,586	-			+0.1
3,394,586	-			-0.1
3,394,586	-			-0.9
3,394,586	-			-0.3
3,394,588	-			-0.2
3,394,588	-			-0.2
3,394,588	-			-2.9
3,394,588	-			-0.5
3,394,588	-			+1.8
3,394,588	-			-3.4
3,394,588	-			-0.5
3,394,597	-			-2.6
3,394,699	+			-0.9
3,394,699	+			+0.1
3,394,708	+			-0.1
3,394,708	+			-2.7
3,394,708	+			+0.7
3,394,710	+			+0.1
3,394,710	+			-0.3
3,394,710	+			-0.6
3,394,710	+			+0.8
3,394,710	+			+0.1
3,394,719	+			-0.1
3,394,736	+			+0.5
3,394,737	-			+0.8
3,394,746	+			+0.5
3,394,747	-			-0.6
3,394,747	-			+1.4
3,394,747	-			-1.8
3,394,749	+			-0.2
3,394,749	+			-1.1
3,394,750	-			-1.5
3,394,768	+			-0.0
3,394,769	-			+0.5
3,394,770	+			-1.2
3,394,771	-			+1.2
3,394,771	-			-0.5
3,394,771	-			+1.4
3,394,771	-			-1.1
3,394,793	-			-0.4
3,394,868	-			+1.6
3,394,877	+	DZA65_RS15620	0.11	+2.5
3,394,877	+	DZA65_RS15620	0.11	-0.0
3,394,878	-	DZA65_RS15620	0.11	-0.5
3,394,878	-	DZA65_RS15620	0.11	-0.1
3,394,978	-	DZA65_RS15620	0.28	-1.4
3,395,231	-	DZA65_RS15620	0.73	-0.6
3,395,231	-	DZA65_RS15620	0.73	+0.4
3,395,333	+			-0.6
3,395,370	+			-2.8
3,395,370	+			-0.2
3,395,371	-			-1.1
3,395,371	-			-2.1
3,395,371	-			-0.1

Or see this region's nucleotide sequence