Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15505

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,358,612	-				-0.4
3,358,663	+				-0.3
3,358,676	-				-1.8
3,358,676	-				-0.2
3,358,676	-				-0.3
3,358,680	+				-3.0
3,358,821	-				-0.2
3,358,821	-				+0.5
3,358,821	-				+0.3
3,358,821	-				+0.2
3,358,823	+				+0.1
3,358,854	+				+0.7
3,358,855	-				+0.7
3,358,855	-				+0.5
3,358,855	-				+2.5
3,358,855	-				+0.8
3,358,855	-				+0.0
3,358,855	-				-0.0
3,358,855	-				-2.3
3,358,865	-				+1.1
3,358,882	+				-0.3
3,358,925	+		DZA65_RS15500	0.15	-0.4
3,358,925	+		DZA65_RS15500	0.15	+0.3
3,358,925	+		DZA65_RS15500	0.15	-0.5
3,358,926	-		DZA65_RS15500	0.15	-1.1
3,359,054	+		DZA65_RS15500	0.58	-0.2
3,359,064	-		DZA65_RS15500	0.62	-1.0
3,359,077	+		DZA65_RS15500	0.66	-1.0
3,359,078	-		DZA65_RS15500	0.66	-0.9
3,359,078	-		DZA65_RS15500	0.66	+1.1
3,359,078	-		DZA65_RS15500	0.66	-0.9
3,359,099	+		DZA65_RS15500	0.73	-1.5
3,359,107	-		DZA65_RS15500	0.76	+0.5
3,359,115	+		DZA65_RS15500	0.79	+0.3
3,359,115	+		DZA65_RS15500	0.79	-0.1
3,359,115	+		DZA65_RS15500	0.79	+1.2
3,359,115	+		DZA65_RS15500	0.79	+0.1
3,359,116	-		DZA65_RS15500	0.79	+0.7
3,359,116	-		DZA65_RS15500	0.79	+1.7
3,359,116	-		DZA65_RS15500	0.79	-0.2
3,359,116	-		DZA65_RS15500	0.79	+1.2
3,359,116	-		DZA65_RS15500	0.79	-0.9
3,359,116	-		DZA65_RS15500	0.79	+1.5
3,359,116	-		DZA65_RS15500	0.79	+0.2
3,359,116	-		DZA65_RS15500	0.79	+0.5
3,359,154	-				-0.5
3,359,234	+				-0.5
3,359,234	+				-0.8
3,359,250	+				-0.2
3,359,250	+				-0.2
3,359,250	+				-0.4
3,359,251	-				-1.5
3,359,268	-				-0.8
3,359,273	+				+1.8
3,359,274	-				+1.3
3,359,274	-				+0.3
3,359,298	+				-0.2
3,359,299	-				+0.7
3,359,349	+				-0.8
3,359,359	-				+0.2
3,359,450	+				-1.5
3,359,450	+				-0.5
3,359,451	-				+0.1
3,359,453	-				-2.0
3,359,485	+				-0.1
3,359,485	+				-0.5
3,359,486	-				-0.4
3,359,495	+				+1.8
3,359,495	+				-1.1
3,359,495	+				-1.1
3,359,496	-				+0.5
3,359,496	-				+0.6
3,359,514	+				+0.1
3,359,515	-				-0.6
3,359,522	+				-0.2
3,359,523	-				-0.9
3,359,577	+				-0.5
3,359,611	-				+1.0
3,359,748	+		DZA65_RS15505	0.15	+1.3
3,359,748	+		DZA65_RS15505	0.15	+0.2
3,359,749	-		DZA65_RS15505	0.15	+0.0
3,359,749	-		DZA65_RS15505	0.15	+0.5
3,359,749	-		DZA65_RS15505	0.15	+2.3
3,359,783	+		DZA65_RS15505	0.18	+0.5
3,359,783	+		DZA65_RS15505	0.18	+1.7
3,359,783	+		DZA65_RS15505	0.18	+0.5
3,359,783	+		DZA65_RS15505	0.18	+0.3
3,359,783	+		DZA65_RS15505	0.18	+1.3
3,359,783	+		DZA65_RS15505	0.18	+1.1
3,359,783	+		DZA65_RS15505	0.18	-0.2
3,359,784	-		DZA65_RS15505	0.18	+1.1
3,359,784	-		DZA65_RS15505	0.18	-0.5
3,359,784	-		DZA65_RS15505	0.18	-0.0
3,359,784	-		DZA65_RS15505	0.18	-0.1
3,359,784	-		DZA65_RS15505	0.18	+0.4
3,359,784	-		DZA65_RS15505	0.18	+0.3
3,359,784	-		DZA65_RS15505	0.18	-0.5
3,359,784	-		DZA65_RS15505	0.18	+0.5
3,359,784	-		DZA65_RS15505	0.18	+0.7
3,359,784	-		DZA65_RS15505	0.18	+0.1
3,359,784	-		DZA65_RS15505	0.18	-1.1
3,359,784	-		DZA65_RS15505	0.18	+1.3
3,359,784	-		DZA65_RS15505	0.18	-1.8
3,359,784	-		DZA65_RS15505	0.18	+2.5
3,359,784	-		DZA65_RS15505	0.18	-0.0
3,359,784	-		DZA65_RS15505	0.18	-0.4
3,359,788	+		DZA65_RS15505	0.18	-1.8
3,359,788	+		DZA65_RS15505	0.18	-0.7
3,359,789	-		DZA65_RS15505	0.18	+2.2
3,359,848	+		DZA65_RS15505	0.23	-1.1
3,359,848	+		DZA65_RS15505	0.23	-0.3
3,359,848	+		DZA65_RS15505	0.23	+1.7
3,359,848	+		DZA65_RS15505	0.23	-0.8
3,359,848	+		DZA65_RS15505	0.23	+0.2
3,359,849	-		DZA65_RS15505	0.23	-0.1
3,359,849	-		DZA65_RS15505	0.23	-0.7
3,359,849	-		DZA65_RS15505	0.23	+1.2
3,359,849	-		DZA65_RS15505	0.23	-0.8
3,359,849	-		DZA65_RS15505	0.23	-0.0
3,359,913	+		DZA65_RS15505	0.28	+0.2
3,359,913	+		DZA65_RS15505	0.28	+0.5
3,360,033	-		DZA65_RS15505	0.38	+0.9
3,360,080	+		DZA65_RS15505	0.42	-0.1
3,360,080	+		DZA65_RS15505	0.42	+1.5
3,360,080	+		DZA65_RS15505	0.42	+0.2
3,360,080	+		DZA65_RS15505	0.42	+0.5
3,360,080	+		DZA65_RS15505	0.42	+0.7
3,360,080	+		DZA65_RS15505	0.42	+0.8
3,360,081	-		DZA65_RS15505	0.42	-1.7
3,360,160	+		DZA65_RS15505	0.48	+0.7
3,360,161	-		DZA65_RS15505	0.48	+0.1
3,360,161	-		DZA65_RS15505	0.48	+2.1
3,360,161	-		DZA65_RS15505	0.48	-1.7
3,360,206	+		DZA65_RS15505	0.52	+0.0
3,360,206	+		DZA65_RS15505	0.52	-0.7
3,360,206	+		DZA65_RS15505	0.52	+1.4
3,360,207	-		DZA65_RS15505	0.52	+0.2
3,360,207	-		DZA65_RS15505	0.52	+0.5
3,360,207	-		DZA65_RS15505	0.52	-3.1
3,360,218	-		DZA65_RS15505	0.53	-0.5
3,360,218	-		DZA65_RS15505	0.53	-1.5
3,360,395	+		DZA65_RS15505	0.67	-0.5
3,360,395	+		DZA65_RS15505	0.67	-0.5
3,360,395	+		DZA65_RS15505	0.67	+0.7
3,360,395	+		DZA65_RS15505	0.67	+0.2
3,360,395	+		DZA65_RS15505	0.67	-0.5
3,360,396	-		DZA65_RS15505	0.67	+0.0
3,360,396	-		DZA65_RS15505	0.67	-1.1
3,360,396	-		DZA65_RS15505	0.67	+0.7
3,360,397	+		DZA65_RS15505	0.67	-0.5
3,360,398	-		DZA65_RS15505	0.67	-1.3
3,360,398	-		DZA65_RS15505	0.67	+0.8
3,360,398	-		DZA65_RS15505	0.67	-0.7
3,360,407	+		DZA65_RS15505	0.68	+1.6
3,360,408	-				+1.3
3,360,408	-		DZA65_RS15505	0.68	-1.2
3,360,408	-		DZA65_RS15505	0.68	-1.7
3,360,408	-		DZA65_RS15505	0.68	+0.5
3,360,451	+		DZA65_RS15505	0.71	-0.5
3,360,497	+		DZA65_RS15505	0.75	-0.3
3,360,521	+		DZA65_RS15505	0.77	+0.3
3,360,521	+		DZA65_RS15505	0.77	+0.1
3,360,521	+		DZA65_RS15505	0.77	+1.2
3,360,521	+		DZA65_RS15505	0.77	-1.2
3,360,521	+		DZA65_RS15505	0.77	+0.7
3,360,521	+		DZA65_RS15505	0.77	-0.2
3,360,521	+		DZA65_RS15505	0.77	-1.3
3,360,521	+		DZA65_RS15505	0.77	+0.0
3,360,521	+		DZA65_RS15505	0.77	+2.1
3,360,521	+		DZA65_RS15505	0.77	-0.1
3,360,522	-		DZA65_RS15505	0.77	+0.4
3,360,522	-		DZA65_RS15505	0.77	+0.1
3,360,522	-		DZA65_RS15505	0.77	+0.7
3,360,522	-		DZA65_RS15505	0.77	+1.0
3,360,522	-		DZA65_RS15505	0.77	+0.4
3,360,522	-		DZA65_RS15505	0.77	-1.1
3,360,522	-		DZA65_RS15505	0.77	+0.7
3,360,522	-		DZA65_RS15505	0.77	-1.1
3,360,522	-		DZA65_RS15505	0.77	+1.1
3,360,522	-		DZA65_RS15505	0.77	-3.2
3,360,522	-		DZA65_RS15505	0.77	-3.0
3,360,522	-		DZA65_RS15505	0.77	-0.5
3,360,524	+		DZA65_RS15505	0.77	+0.4
3,360,524	+		DZA65_RS15505	0.77	+0.0
3,360,524	+		DZA65_RS15505	0.77	-0.1
3,360,524	+		DZA65_RS15505	0.77	-0.0
3,360,524	+		DZA65_RS15505	0.77	-0.5
3,360,524	+				-2.1
3,360,525	-		DZA65_RS15505	0.77	-1.5
3,360,525	-		DZA65_RS15505	0.77	+0.0
3,360,525	-		DZA65_RS15505	0.77	+0.3
3,360,525	-		DZA65_RS15505	0.77	-1.8
3,360,525	-		DZA65_RS15505	0.77	+0.3
3,360,525	-		DZA65_RS15505	0.77	+0.6
3,360,525	-		DZA65_RS15505	0.77	-0.3
3,360,525	-		DZA65_RS15505	0.77	+2.1
3,360,525	-		DZA65_RS15505	0.77	+2.3
3,360,527	+		DZA65_RS15505	0.77	+0.2
3,360,527	+		DZA65_RS15505	0.77	+0.5
3,360,527	+		DZA65_RS15505	0.77	+1.1
3,360,527	+		DZA65_RS15505	0.77	+1.0
3,360,528	-		DZA65_RS15505	0.77	+0.3
3,360,647	+		DZA65_RS15505	0.87	+0.7
3,360,647	+		DZA65_RS15505	0.87	+0.6
3,360,647	+		DZA65_RS15505	0.87	+0.8
3,360,647	+		DZA65_RS15505	0.87	-0.6
3,360,647	+		DZA65_RS15505	0.87	+2.2
3,360,647	+		DZA65_RS15505	0.87	-0.1
3,360,647	+		DZA65_RS15505	0.87	-0.5
3,360,648	-		DZA65_RS15505	0.87	+1.2
3,360,648	-		DZA65_RS15505	0.87	-1.1
3,360,648	-		DZA65_RS15505	0.87	-0.3
3,360,648	-		DZA65_RS15505	0.87	-1.3
3,360,689	+				-1.1
3,360,689	+				-1.1
3,360,689	+				-0.2
3,360,689	+				-1.8
3,360,689	+				-0.2
3,360,690	-				-0.5
3,360,690	-				+0.4
3,360,690	-				-1.8
3,360,690	-				+1.2
3,360,690	-				-1.8
3,360,690	-				-0.8
3,360,690	-				-1.0
3,360,690	-				+0.8
3,360,690	-				+1.3
3,360,749	+				+0.7
3,360,749	+				+0.8
3,360,749	+				+0.8
3,360,750	-				-0.8
3,360,750	-				-0.7
3,360,750	-				-1.6
3,360,782	+				-1.1
3,360,782	+				+0.1
3,360,783	-				-0.2
3,360,800	+				-0.3
3,360,801	-				+0.9
3,360,801	-				+0.4
3,360,822	-				+0.5
3,360,858	-				+0.1
3,360,902	+				-2.1
3,360,902	+				+0.9
3,360,903	-				-0.4
3,360,917	-				-2.1
3,360,937	+				-0.9
3,360,937	+				-0.6
3,360,937	+				+0.2
3,360,937	+				+0.7
3,360,937	+				+0.5
3,360,938	-				-0.1
3,360,938	-				+0.1
3,360,938	-				-1.8
3,360,938	-				-0.5
3,360,938	-				+0.2
3,360,938	-				-1.7
3,360,964	+				+1.2
3,360,964	+				-0.6
3,360,965	-				+0.2
3,361,151	+		DZA65_RS15510	0.15	+1.5
3,361,152	-		DZA65_RS15510	0.15	+0.8
3,361,194	+		DZA65_RS15510	0.18	-0.9
3,361,195	-		DZA65_RS15510	0.18	-0.2
3,361,195	-		DZA65_RS15510	0.18	+1.2
3,361,195	-		DZA65_RS15510	0.18	-0.7
3,361,195	-		DZA65_RS15510	0.18	+0.5
3,361,285	+		DZA65_RS15510	0.24	+0.3
3,361,286	-		DZA65_RS15510	0.24	+0.2
3,361,286	-		DZA65_RS15510	0.24	-0.7
3,361,286	-		DZA65_RS15510	0.24	+1.1
3,361,294	-		DZA65_RS15510	0.24	-0.6
3,361,342	+		DZA65_RS15510	0.27	+0.5
3,361,342	+		DZA65_RS15510	0.27	-3.6
3,361,343	-		DZA65_RS15510	0.27	+0.4
3,361,343	-		DZA65_RS15510	0.27	-0.6
3,361,343	-		DZA65_RS15510	0.27	+0.4
3,361,343	-		DZA65_RS15510	0.27	-0.0
3,361,343	-		DZA65_RS15510	0.27	-0.3
3,361,343	-		DZA65_RS15510	0.27	-0.5
3,361,343	-		DZA65_RS15510	0.27	-1.2
3,361,377	+		DZA65_RS15510	0.29	-0.4
3,361,377	+		DZA65_RS15510	0.29	+0.3
3,361,378	-		DZA65_RS15510	0.29	+0.8
3,361,378	-		DZA65_RS15510	0.29	+0.4
3,361,388	+		DZA65_RS15510	0.30	-1.4
3,361,388	+		DZA65_RS15510	0.30	-1.2
3,361,388	+		DZA65_RS15510	0.30	-1.5
3,361,389	-		DZA65_RS15510	0.30	+2.1
3,361,389	-		DZA65_RS15510	0.30	-1.5
3,361,503	-		DZA65_RS15510	0.37	-0.1
3,361,558	+		DZA65_RS15510	0.41	+0.7
3,361,559	-		DZA65_RS15510	0.41	-0.3
3,361,559	-		DZA65_RS15510	0.41	-1.2
3,361,560	+		DZA65_RS15510	0.41	-2.8
3,361,560	+		DZA65_RS15510	0.41	-0.5
3,361,561	-		DZA65_RS15510	0.41	-0.5
3,361,561	-		DZA65_RS15510	0.41	-1.8
3,361,582	-		DZA65_RS15510	0.42	-0.5
3,361,582	-		DZA65_RS15510	0.42	-0.7
3,361,636	+		DZA65_RS15510	0.46	-0.9
3,361,636	+		DZA65_RS15510	0.46	+0.0
3,361,636	+		DZA65_RS15510	0.46	-1.1
3,361,637	-		DZA65_RS15510	0.46	+1.8