Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15485

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,355,208	+		DZA65_RS15480	0.86	+1.1
3,355,209	-		DZA65_RS15480	0.86	-0.8
3,355,242	-				+0.1
3,355,264	+				+1.1
3,355,276	+				+0.5
3,355,276	+				-0.5
3,355,276	+				-0.8
3,355,277	-				+1.5
3,355,277	-				+0.5
3,355,279	+				-0.1
3,355,279	+				-0.3
3,355,279	+				-3.1
3,355,280	-				+0.2
3,355,288	-				+0.3
3,355,289	+				+0.0
3,355,289	+				+1.1
3,355,290	-				-0.7
3,355,290	-				+0.5
3,355,290	-				-0.5
3,355,310	-				+1.8
3,355,364	+				-1.0
3,355,541	+				+1.2
3,355,583	+				+0.5
3,355,583	+				+1.3
3,355,583	+				+0.7
3,355,583	+				+1.1
3,355,583	+				-0.7
3,355,584	-				-0.8
3,355,584	-				+1.2
3,355,678	+				-0.4
3,355,685	+				-0.3
3,355,734	+				-1.3
3,355,735	-				+1.8
3,355,735	-				-0.8
3,355,778	-				+0.2
3,355,821	+				-0.1
3,355,837	+				+0.5
3,355,862	-				-0.2
3,356,004	-				-0.5
3,356,084	+				+1.0
3,356,084	+				-0.3
3,356,089	+				+1.5
3,356,090	-				-0.4
3,356,093	-				+0.9
3,356,098	-				+0.1
3,356,114	+				-1.2
3,356,275	+				+1.5
3,356,282	-				-0.8
3,356,282	-				+0.8
3,356,294	+				-1.1
3,356,294	+				-1.5
3,356,295	-				-1.8
3,356,295	-				-0.3
3,356,295	-				-1.1
3,356,295	-				-0.3
3,356,295	-				+1.7
3,356,295	-				-1.4
3,356,295	-				+1.1
3,356,530	+		DZA65_RS15485	0.17	-0.5
3,356,540	+		DZA65_RS15485	0.18	+0.2
3,356,541	-		DZA65_RS15485	0.18	+1.7
3,356,556	-		DZA65_RS15485	0.18	+1.4
3,356,562	-		DZA65_RS15485	0.19	-0.1
3,356,581	-		DZA65_RS15485	0.20	+0.5
3,356,762	-		DZA65_RS15485	0.28	+0.5
3,356,762	-		DZA65_RS15485	0.28	-0.0
3,356,823	+		DZA65_RS15485	0.31	+0.9
3,356,828	+		DZA65_RS15485	0.31	-0.1
3,356,828	+		DZA65_RS15485	0.31	-1.3
3,356,828	+		DZA65_RS15485	0.31	-0.2
3,356,828	+		DZA65_RS15485	0.31	+1.0
3,356,829	-		DZA65_RS15485	0.31	+0.4
3,356,829	-		DZA65_RS15485	0.31	-1.3
3,356,969	+		DZA65_RS15485	0.37	+1.7
3,356,969	+		DZA65_RS15485	0.37	+0.5
3,356,969	+		DZA65_RS15485	0.37	+1.8
3,356,970	-		DZA65_RS15485	0.37	-2.0
3,356,970	-		DZA65_RS15485	0.37	+0.1
3,356,970	-		DZA65_RS15485	0.37	-1.7
3,356,980	+		DZA65_RS15485	0.38	-0.2
3,356,980	+				+1.5
3,356,981	-		DZA65_RS15485	0.38	-0.2
3,356,981	-		DZA65_RS15485	0.38	+1.0
3,357,039	+		DZA65_RS15485	0.40	-1.1
3,357,039	+		DZA65_RS15485	0.40	+0.7
3,357,040	-		DZA65_RS15485	0.40	-1.5
3,357,121	+		DZA65_RS15485	0.44	-1.8
3,357,130	+		DZA65_RS15485	0.45	+0.3
3,357,130	+		DZA65_RS15485	0.45	+0.1
3,357,130	+		DZA65_RS15485	0.45	+0.9
3,357,130	+		DZA65_RS15485	0.45	+0.2
3,357,130	+		DZA65_RS15485	0.45	-0.3
3,357,131	-		DZA65_RS15485	0.45	-2.1
3,357,131	-		DZA65_RS15485	0.45	+1.6
3,357,131	-		DZA65_RS15485	0.45	+0.5
3,357,131	-		DZA65_RS15485	0.45	-2.1
3,357,131	-		DZA65_RS15485	0.45	-1.4
3,357,131	-		DZA65_RS15485	0.45	+1.2
3,357,131	-		DZA65_RS15485	0.45	-0.3
3,357,131	-		DZA65_RS15485	0.45	+1.8
3,357,131	-		DZA65_RS15485	0.45	+0.5
3,357,131	-		DZA65_RS15485	0.45	-0.8
3,357,297	+		DZA65_RS15485	0.52	-0.8
3,357,321	+		DZA65_RS15485	0.53	-1.3
3,357,641	+		DZA65_RS15485	0.68	-0.7
3,357,641	+		DZA65_RS15485	0.68	-2.7
3,357,641	+		DZA65_RS15485	0.68	-0.0
3,357,641	+		DZA65_RS15485	0.68	+0.8
3,357,641	+		DZA65_RS15485	0.68	+0.7
3,357,641	+		DZA65_RS15485	0.68	+0.7
3,357,641	+		DZA65_RS15485	0.68	-0.3
3,357,642	-		DZA65_RS15485	0.68	-0.5
3,357,642	-		DZA65_RS15485	0.68	+1.2
3,357,874	+		DZA65_RS15485	0.79	+0.1
3,357,875	-		DZA65_RS15485	0.79	+0.3
3,357,880	+		DZA65_RS15485	0.79	+3.0
3,357,881	-		DZA65_RS15485	0.79	+0.9
3,357,881	-		DZA65_RS15485	0.79	-1.0
3,357,881	-		DZA65_RS15485	0.79	+0.5
3,357,881	-		DZA65_RS15485	0.79	+1.5
3,357,881	-		DZA65_RS15485	0.79	-0.3
3,357,910	-		DZA65_RS15485	0.80	-1.5
3,357,924	+		DZA65_RS15485	0.81	-0.5
3,358,192	+				+2.7
3,358,192	+				+0.7
3,358,192	+				-0.1
3,358,192	+				+0.2
3,358,192	+				+0.7
3,358,192	+				-1.1
3,358,192	+				+0.8
3,358,192	+				-1.1
3,358,193	-				+0.8
3,358,221	+				-0.4
3,358,252	-				+0.2
3,358,264	-				+0.9
3,358,266	+				+2.6
3,358,462	+		DZA65_RS15495	0.21	-1.4
3,358,462	+		DZA65_RS15495	0.21	+0.6
3,358,462	+		DZA65_RS15495	0.21	+0.7
3,358,463	-		DZA65_RS15495	0.21	+0.5
3,358,491	+		DZA65_RS15495	0.36	-0.1
3,358,491	+		DZA65_RS15495	0.36	-0.8
3,358,491	+		DZA65_RS15495	0.36	-1.3
3,358,491	+		DZA65_RS15495	0.36	-0.4
3,358,492	-		DZA65_RS15495	0.37	-0.3
3,358,492	-		DZA65_RS15495	0.37	+0.5
3,358,494	+		DZA65_RS15495	0.38	-0.5
3,358,495	-		DZA65_RS15495	0.38	-1.5
3,358,495	-				-0.5
3,358,495	-		DZA65_RS15495	0.38	-0.2
3,358,502	+		DZA65_RS15495	0.42	-1.2
3,358,503	-		DZA65_RS15495	0.42	+0.4
3,358,503	-		DZA65_RS15495	0.42	-0.7
3,358,534	+		DZA65_RS15495	0.59	-1.7
3,358,612	-				-0.4
3,358,663	+				-0.3
3,358,676	-				-1.8
3,358,676	-				-0.2
3,358,676	-				-0.3
3,358,680	+				-3.0
3,358,821	-				-0.2
3,358,821	-				+0.5
3,358,821	-				+0.3
3,358,821	-				+0.2
3,358,823	+				+0.1
3,358,854	+				+0.7
3,358,855	-				+0.7
3,358,855	-				+0.5
3,358,855	-				+2.5
3,358,855	-				+0.8
3,358,855	-				+0.0
3,358,855	-				-0.0
3,358,855	-				-2.3
3,358,865	-				+1.1
3,358,882	+				-0.3
3,358,925	+		DZA65_RS15500	0.15	-0.4
3,358,925	+		DZA65_RS15500	0.15	+0.3
3,358,925	+		DZA65_RS15500	0.15	-0.5
3,358,926	-		DZA65_RS15500	0.15	-1.1
3,359,054	+		DZA65_RS15500	0.58	-0.2
3,359,064	-		DZA65_RS15500	0.62	-1.0
3,359,077	+		DZA65_RS15500	0.66	-1.0
3,359,078	-		DZA65_RS15500	0.66	-0.9
3,359,078	-		DZA65_RS15500	0.66	+1.1
3,359,078	-		DZA65_RS15500	0.66	-0.9
3,359,099	+		DZA65_RS15500	0.73	-1.5
3,359,107	-		DZA65_RS15500	0.76	+0.5
3,359,115	+		DZA65_RS15500	0.79	+0.3
3,359,115	+		DZA65_RS15500	0.79	-0.1
3,359,115	+		DZA65_RS15500	0.79	+1.2
3,359,115	+		DZA65_RS15500	0.79	+0.1
3,359,116	-		DZA65_RS15500	0.79	+0.7
3,359,116	-		DZA65_RS15500	0.79	+1.7
3,359,116	-		DZA65_RS15500	0.79	-0.2
3,359,116	-		DZA65_RS15500	0.79	+1.2
3,359,116	-		DZA65_RS15500	0.79	-0.9
3,359,116	-		DZA65_RS15500	0.79	+1.5
3,359,116	-		DZA65_RS15500	0.79	+0.2
3,359,116	-		DZA65_RS15500	0.79	+0.5
3,359,154	-				-0.5
3,359,234	+				-0.5
3,359,234	+				-0.8
3,359,250	+				-0.2
3,359,250	+				-0.2
3,359,250	+				-0.4
3,359,251	-				-1.5
3,359,268	-				-0.8
3,359,273	+				+1.8
3,359,274	-				+1.3
3,359,274	-				+0.3
3,359,298	+				-0.2
3,359,299	-				+0.7