Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15335

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,324,053	+				-1.2
3,324,066	-				+0.2
3,324,126	+				+0.8
3,324,126	+				+0.3
3,324,127	-				-0.4
3,324,127	-				+0.0
3,324,127	-				-1.1
3,324,127	-				+0.1
3,324,127	-				-0.9
3,324,127	-				-1.5
3,324,130	+				+0.5
3,324,130	+				-0.5
3,324,131	-				+0.5
3,324,131	-				-1.2
3,324,131	-				+0.2
3,324,137	+				-0.9
3,324,137	+				-0.1
3,324,229	+				-0.7
3,324,525	-		DZA65_RS15330	0.49	-1.4
3,324,897	+				-0.7
3,324,897	+				-0.5
3,324,898	-				+0.1
3,324,898	-				-0.9
3,324,898	-				-0.3
3,324,956	-				+4.8
3,324,956	-				-0.2
3,325,042	+				-0.3
3,325,043	-				+0.5
3,325,051	+				+0.2
3,325,051	+				-1.2
3,325,074	-				-2.5
3,325,074	-				-1.0
3,325,078	+				+0.8
3,325,078	+				-1.1
3,325,078	+				-0.5
3,325,078	+				-0.8
3,325,078	+				-2.5
3,325,078	+				-1.5
3,325,078	+				+0.8
3,325,078	+				-0.3
3,325,078	+				+1.0
3,325,078	+				+0.5
3,325,079	-				-0.5
3,325,079	-				+0.1
3,325,079	-				-1.3
3,325,079	-				+1.4
3,325,188	+		DZA65_RS15335	0.15	+0.8
3,325,188	+		DZA65_RS15335	0.15	-2.1
3,325,189	-		DZA65_RS15335	0.15	+0.5
3,325,189	-		DZA65_RS15335	0.15	-1.5
3,325,189	-		DZA65_RS15335	0.15	-0.9
3,325,248	-		DZA65_RS15335	0.19	-3.6
3,325,258	+		DZA65_RS15335	0.20	-2.4
3,325,258	+		DZA65_RS15335	0.20	-0.8
3,325,300	+		DZA65_RS15335	0.23	-0.3
3,325,300	+		DZA65_RS15335	0.23	-0.2
3,325,335	+		DZA65_RS15335	0.25	-2.0
3,325,335	+		DZA65_RS15335	0.25	-0.8
3,325,336	-		DZA65_RS15335	0.25	-2.3
3,325,336	-		DZA65_RS15335	0.25	-1.9
3,325,442	+		DZA65_RS15335	0.32	-0.9
3,325,442	+		DZA65_RS15335	0.32	-2.5
3,325,443	-		DZA65_RS15335	0.32	+0.1
3,325,443	-		DZA65_RS15335	0.32	-1.5
3,325,469	+		DZA65_RS15335	0.34	-1.1
3,325,470	-		DZA65_RS15335	0.34	-1.0
3,325,470	-		DZA65_RS15335	0.34	-0.7
3,325,487	-		DZA65_RS15335	0.35	+0.5
3,325,487	-		DZA65_RS15335	0.35	-1.7
3,325,487	-		DZA65_RS15335	0.35	-1.5
3,325,487	-		DZA65_RS15335	0.35	-0.5
3,325,514	-		DZA65_RS15335	0.37	-1.3
3,325,527	-		DZA65_RS15335	0.38	-0.9
3,325,640	+		DZA65_RS15335	0.45	-0.6
3,325,657	+		DZA65_RS15335	0.46	-1.1
3,325,657	+		DZA65_RS15335	0.46	-1.2
3,325,657	+		DZA65_RS15335	0.46	+0.5
3,325,658	-		DZA65_RS15335	0.46	-2.7
3,325,699	+		DZA65_RS15335	0.49	+0.5
3,325,699	+		DZA65_RS15335	0.49	-1.3
3,325,699	+		DZA65_RS15335	0.49	-0.7
3,325,699	+		DZA65_RS15335	0.49	-0.2
3,325,699	+		DZA65_RS15335	0.49	-0.5
3,325,699	+		DZA65_RS15335	0.49	-0.6
3,325,705	+		DZA65_RS15335	0.49	+0.9
3,325,758	+		DZA65_RS15335	0.53	-1.6
3,325,759	-		DZA65_RS15335	0.53	+0.5
3,325,759	-		DZA65_RS15335	0.53	+1.0
3,325,759	-		DZA65_RS15335	0.53	+1.7
3,325,759	-		DZA65_RS15335	0.53	-0.1
3,325,779	+		DZA65_RS15335	0.54	+0.2
3,325,780	+		DZA65_RS15335	0.54	+0.6
3,325,780	+		DZA65_RS15335	0.54	-0.8
3,325,780	+		DZA65_RS15335	0.54	-1.1
3,325,780	+		DZA65_RS15335	0.54	-1.1
3,325,780	+		DZA65_RS15335	0.54	-0.8
3,325,780	+		DZA65_RS15335	0.54	-1.8
3,325,780	+		DZA65_RS15335	0.54	-1.2
3,325,780	+		DZA65_RS15335	0.54	+0.0
3,325,780	+		DZA65_RS15335	0.54	-1.9
3,325,780	+		DZA65_RS15335	0.54	-1.2
3,325,780	+		DZA65_RS15335	0.54	-0.9
3,325,780	+		DZA65_RS15335	0.54	-0.7
3,325,781	-		DZA65_RS15335	0.54	-0.8
3,325,781	-		DZA65_RS15335	0.54	-1.8
3,325,781	-		DZA65_RS15335	0.54	-1.0
3,325,781	-		DZA65_RS15335	0.54	-2.1
3,325,781	-		DZA65_RS15335	0.54	-1.8
3,325,781	-		DZA65_RS15335	0.54	-1.5
3,325,781	-		DZA65_RS15335	0.54	-0.6
3,325,781	-		DZA65_RS15335	0.54	-0.9
3,325,781	-		DZA65_RS15335	0.54	-1.8
3,325,781	-		DZA65_RS15335	0.54	-1.2
3,325,781	-		DZA65_RS15335	0.54	-0.9
3,325,781	-		DZA65_RS15335	0.54	-0.6
3,325,781	-		DZA65_RS15335	0.54	-0.5
3,325,781	-		DZA65_RS15335	0.54	-0.0
3,325,781	-		DZA65_RS15335	0.54	-1.5
3,325,859	+		DZA65_RS15335	0.59	+0.8
3,325,859	+		DZA65_RS15335	0.59	-0.7
3,325,860	-		DZA65_RS15335	0.59	-0.3
3,325,861	+		DZA65_RS15335	0.60	+0.3
3,325,861	+		DZA65_RS15335	0.60	-0.7
3,325,861	+		DZA65_RS15335	0.60	-0.8
3,325,862	-		DZA65_RS15335	0.60	+0.0
3,325,862	-		DZA65_RS15335	0.60	-1.3
3,325,862	-		DZA65_RS15335	0.60	-0.2
3,325,862	-		DZA65_RS15335	0.60	+0.1
3,325,862	-		DZA65_RS15335	0.60	-0.3
3,325,862	-		DZA65_RS15335	0.60	-0.8
3,325,862	-		DZA65_RS15335	0.60	-0.9
3,325,862	-		DZA65_RS15335	0.60	+0.0
3,325,940	+		DZA65_RS15335	0.65	-2.3
3,325,940	+		DZA65_RS15335	0.65	-1.1
3,325,941	-		DZA65_RS15335	0.65	-0.7
3,325,972	+		DZA65_RS15335	0.67	-0.8
3,325,972	+		DZA65_RS15335	0.67	+0.1
3,325,973	-		DZA65_RS15335	0.67	-1.1
3,325,973	-		DZA65_RS15335	0.67	-1.5
3,325,973	-		DZA65_RS15335	0.67	-0.4
3,325,973	-		DZA65_RS15335	0.67	-0.6
3,325,973	-		DZA65_RS15335	0.67	-1.5
3,326,018	+		DZA65_RS15335	0.70	-0.8
3,326,019	-		DZA65_RS15335	0.70	+0.1
3,326,019	-		DZA65_RS15335	0.70	-3.5
3,326,038	+		DZA65_RS15335	0.71	+0.2
3,326,039	-		DZA65_RS15335	0.71	-1.0
3,326,070	+		DZA65_RS15335	0.73	-0.2
3,326,070	+		DZA65_RS15335	0.73	-1.8
3,326,070	+		DZA65_RS15335	0.73	+0.1
3,326,070	+		DZA65_RS15335	0.73	+1.5
3,326,070	+		DZA65_RS15335	0.73	+0.5
3,326,070	+		DZA65_RS15335	0.73	-0.3
3,326,070	+		DZA65_RS15335	0.73	-0.5
3,326,070	+		DZA65_RS15335	0.73	-0.5
3,326,070	+		DZA65_RS15335	0.73	-1.8
3,326,071	-		DZA65_RS15335	0.73	-2.1
3,326,071	-		DZA65_RS15335	0.73	+0.2
3,326,071	-		DZA65_RS15335	0.73	-1.5
3,326,071	-		DZA65_RS15335	0.73	-1.0
3,326,071	-		DZA65_RS15335	0.73	-2.1
3,326,103	-		DZA65_RS15335	0.75	-0.5
3,326,103	-		DZA65_RS15335	0.75	-2.0
3,326,183	+		DZA65_RS15335	0.81	-1.0
3,326,183	+		DZA65_RS15335	0.81	-0.4
3,326,184	-		DZA65_RS15335	0.81	-2.1
3,326,184	-		DZA65_RS15335	0.81	-1.2
3,326,206	+		DZA65_RS15335	0.82	-1.1
3,326,238	-		DZA65_RS15335	0.84	-1.8
3,326,238	-		DZA65_RS15335	0.84	-2.1
3,326,238	-		DZA65_RS15335	0.84	-1.4
3,326,238	-		DZA65_RS15335	0.84	-1.1
3,326,238	-		DZA65_RS15335	0.84	-1.6
3,326,350	+				-1.5
3,326,351	-				-1.4
3,326,351	-				-2.1
3,326,351	-				-1.1
3,326,351	-				-0.5
3,326,445	-				-1.1
3,326,506	+				-1.8
3,326,506	+				-0.2
3,326,506	+				-1.8
3,326,506	+				-1.8
3,326,506	+				+0.5
3,326,506	+				-0.1
3,326,506	+				-1.0
3,326,506	+				-1.1
3,326,507	-				-1.8
3,326,507	-				-0.5
3,326,507	-				+0.0
3,326,507	-				+0.3
3,326,507	-				+1.9
3,326,507	-				-0.5
3,326,545	+				-1.7
3,326,545	+				-0.7
3,326,565	-		DZA65_RS15340	0.12	-1.3
3,326,567	+		DZA65_RS15340	0.13	-3.2
3,326,567	+		DZA65_RS15340	0.13	-2.1
3,326,567	+		DZA65_RS15340	0.13	-1.5
3,326,567	+		DZA65_RS15340	0.13	-2.8
3,326,568	-		DZA65_RS15340	0.13	+0.0
3,326,568	-		DZA65_RS15340	0.13	-1.8
3,326,568	-		DZA65_RS15340	0.13	-0.2
3,326,569	+		DZA65_RS15340	0.13	+0.1
3,326,569	+		DZA65_RS15340	0.13	-0.2
3,326,569	+		DZA65_RS15340	0.13	+0.1
3,326,569	+		DZA65_RS15340	0.13	-0.6
3,326,570	-		DZA65_RS15340	0.13	-0.1
3,326,570	-		DZA65_RS15340	0.13	-1.6
3,326,570	-		DZA65_RS15340	0.13	+0.5
3,326,570	-		DZA65_RS15340	0.13	+0.7
3,326,570	-		DZA65_RS15340	0.13	+0.5
3,326,570	-		DZA65_RS15340	0.13	+0.6
3,326,752	+		DZA65_RS15340	0.50	-0.5
3,326,752	+		DZA65_RS15340	0.50	+0.1
3,326,752	+		DZA65_RS15340	0.50	+1.5
3,326,752	+		DZA65_RS15340	0.50	+0.5
3,326,752	+		DZA65_RS15340	0.50	-1.3
3,326,753	-		DZA65_RS15340	0.50	-0.8
3,326,753	-		DZA65_RS15340	0.50	-0.3
3,326,753	-		DZA65_RS15340	0.50	+0.4
3,326,753	-		DZA65_RS15340	0.50	-2.2
3,326,753	-		DZA65_RS15340	0.50	+1.7
3,326,753	-		DZA65_RS15340	0.50	+1.0
3,326,753	-		DZA65_RS15340	0.50	-1.3
3,326,753	-		DZA65_RS15340	0.50	-2.1
3,326,753	-		DZA65_RS15340	0.50	+1.5
3,326,753	-		DZA65_RS15340	0.50	-0.5
3,326,753	-		DZA65_RS15340	0.50	-0.6
3,326,753	-		DZA65_RS15340	0.50	-0.0
3,326,756	+		DZA65_RS15340	0.51	-0.2
3,326,756	+		DZA65_RS15340	0.51	-0.7
3,326,757	-		DZA65_RS15340	0.51	+0.2
3,326,831	+		DZA65_RS15340	0.66	-0.7
3,326,832	-		DZA65_RS15340	0.66	-1.1
3,326,832	-		DZA65_RS15340	0.66	-1.8
3,326,846	-		DZA65_RS15340	0.69	-0.8
3,326,857	+		DZA65_RS15340	0.72	-0.4
3,326,857	+		DZA65_RS15340	0.72	-0.9
3,326,863	+		DZA65_RS15340	0.73	+0.5
3,326,863	+		DZA65_RS15340	0.73	+0.5
3,326,863	+		DZA65_RS15340	0.73	-1.8
3,326,863	+		DZA65_RS15340	0.73	+0.7
3,326,863	+		DZA65_RS15340	0.73	-1.3
3,326,863	+		DZA65_RS15340	0.73	-0.3
3,326,863	+		DZA65_RS15340	0.73	+0.8
3,326,863	+		DZA65_RS15340	0.73	-0.5
3,326,863	+		DZA65_RS15340	0.73	+0.5
3,326,863	+		DZA65_RS15340	0.73	-0.7
3,326,863	+		DZA65_RS15340	0.73	-0.8
3,326,863	+		DZA65_RS15340	0.73	-0.9
3,326,863	+		DZA65_RS15340	0.73	-0.7
3,326,863	+		DZA65_RS15340	0.73	-1.5
3,326,864	-		DZA65_RS15340	0.73	-0.0
3,326,864	-		DZA65_RS15340	0.73	-0.2
3,326,864	-		DZA65_RS15340	0.73	-1.5
3,326,864	-		DZA65_RS15340	0.73	+0.0
3,326,864	-		DZA65_RS15340	0.73	+0.7
3,326,864	-		DZA65_RS15340	0.73	-2.1
3,326,864	-		DZA65_RS15340	0.73	-0.5
3,326,864	-		DZA65_RS15340	0.73	-1.5
3,326,864	-		DZA65_RS15340	0.73	-0.9
3,326,864	-		DZA65_RS15340	0.73	+0.1
3,326,864	-		DZA65_RS15340	0.73	-0.6
3,326,864	-		DZA65_RS15340	0.73	-0.6
3,326,864	-		DZA65_RS15340	0.73	+0.6
3,326,864	-		DZA65_RS15340	0.73	-0.1
3,326,864	-		DZA65_RS15340	0.73	+0.3
3,326,864	-		DZA65_RS15340	0.73	-2.3
3,326,866	+		DZA65_RS15340	0.73	-1.1
3,326,867	-		DZA65_RS15340	0.74	-2.2
3,326,923	-		DZA65_RS15340	0.85	-2.1
3,326,923	-		DZA65_RS15340	0.85	-1.1
3,326,923	-		DZA65_RS15340	0.85	+0.7
3,326,923	-		DZA65_RS15340	0.85	+0.0
3,326,966	+				-0.6
3,326,980	+				-1.8
3,327,001	+				-2.1
3,327,001	+				-1.1
3,327,001	+				+0.5
3,327,001	+				-0.1
3,327,001	+				-0.4
3,327,001	+				-1.6
3,327,001	+				+0.5
3,327,002	-				+0.5
3,327,002	-				-0.2
3,327,002	-				+0.5
3,327,002	-				+0.0
3,327,002	-				+0.2
3,327,002	-				-1.0
3,327,002	-				-0.6
3,327,002	-				-3.1
3,327,006	+				-2.7
3,327,006	+				-2.1
3,327,007	-				-0.1
3,327,007	-				-0.5
3,327,007	-				+0.5
3,327,007	-				+1.2
3,327,009	+				+0.9
3,327,010	-				-2.5
3,327,059	+				-0.4
3,327,060	-				+0.8
3,327,206	+				-0.5
3,327,207	-				+0.4
3,327,246	+				+0.5
3,327,246	+				-2.1
3,327,246	+				-0.2
3,327,246	+				-1.7
3,327,246	+				-0.3
3,327,247	-				+0.1
3,327,247	-				-2.1
3,327,247	-				-1.1
3,327,266	+				-0.2
3,327,267	-				-0.4
3,327,267	-				-0.4
3,327,368	+		DZA65_RS15345	0.12	-0.2
3,327,368	+		DZA65_RS15345	0.12	-0.3
3,327,368	+		DZA65_RS15345	0.12	-1.1
3,327,368	+		DZA65_RS15345	0.12	-0.5
3,327,368	+		DZA65_RS15345	0.12	-0.0
3,327,368	+		DZA65_RS15345	0.12	+0.2
3,327,368	+		DZA65_RS15345	0.12	+0.9
3,327,368	+		DZA65_RS15345	0.12	-2.3
3,327,369	-		DZA65_RS15345	0.12	-0.3
3,327,369	-		DZA65_RS15345	0.12	-0.0
3,327,369	-		DZA65_RS15345	0.12	-0.2
3,327,369	-		DZA65_RS15345	0.12	-1.5
3,327,369	-		DZA65_RS15345	0.12	-1.2
3,327,369	-		DZA65_RS15345	0.12	-0.5
3,327,369	-		DZA65_RS15345	0.12	+1.9
3,327,369	-		DZA65_RS15345	0.12	-0.5
3,327,369	-		DZA65_RS15345	0.12	+0.5
3,327,369	-		DZA65_RS15345	0.12	-0.0
3,327,372	+		DZA65_RS15345	0.12	-0.4
3,327,372	+		DZA65_RS15345	0.12	-1.5
3,327,373	-		DZA65_RS15345	0.12	+0.1
3,327,411	+		DZA65_RS15345	0.17	+0.5
3,327,412	-		DZA65_RS15345	0.17	-0.5
3,327,412	-		DZA65_RS15345	0.17	-0.2
3,327,412	-		DZA65_RS15345	0.17	+0.1
3,327,413	+		DZA65_RS15345	0.17	-0.1
3,327,414	-		DZA65_RS15345	0.17	-1.8
3,327,414	-		DZA65_RS15345	0.17	-0.4