Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13455

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,886,744	+				-0.6
2,886,745	-		DZA65_RS13450	0.31	+1.1
2,886,777	+		DZA65_RS13450	0.33	-0.6
2,886,778	-		DZA65_RS13450	0.34	-0.6
2,886,817	+		DZA65_RS13450	0.37	-0.1
2,886,817	+				-0.6
2,886,817	+		DZA65_RS13450	0.37	-0.2
2,886,817	+		DZA65_RS13450	0.37	+0.2
2,886,818	-		DZA65_RS13450	0.37	-0.8
2,886,818	-		DZA65_RS13450	0.37	-0.6
2,886,818	-		DZA65_RS13450	0.37	-0.3
2,886,818	-		DZA65_RS13450	0.37	+0.4
2,886,818	-		DZA65_RS13450	0.37	-1.1
2,886,823	+		DZA65_RS13450	0.37	-1.2
2,886,823	+		DZA65_RS13450	0.37	-0.3
2,886,823	+		DZA65_RS13450	0.37	+1.1
2,886,823	+		DZA65_RS13450	0.37	-0.3
2,886,823	+		DZA65_RS13450	0.37	-1.9
2,886,823	+		DZA65_RS13450	0.37	+1.1
2,886,823	+		DZA65_RS13450	0.37	+0.2
2,886,823	+		DZA65_RS13450	0.37	+0.0
2,886,824	-		DZA65_RS13450	0.37	+0.6
2,886,824	-		DZA65_RS13450	0.37	-0.9
2,886,824	-		DZA65_RS13450	0.37	-0.5
2,886,824	-		DZA65_RS13450	0.37	-0.4
2,886,826	+		DZA65_RS13450	0.38	+1.0
2,886,826	+		DZA65_RS13450	0.38	-0.3
2,886,827	-		DZA65_RS13450	0.38	+2.2
2,886,827	-		DZA65_RS13450	0.38	+0.9
2,886,827	-		DZA65_RS13450	0.38	-1.5
2,886,827	-		DZA65_RS13450	0.38	-1.2
2,886,931	-		DZA65_RS13450	0.46	-0.7
2,887,083	+		DZA65_RS13450	0.59	-0.2
2,887,084	-		DZA65_RS13450	0.59	+0.1
2,887,084	-		DZA65_RS13450	0.59	+0.1
2,887,108	+		DZA65_RS13450	0.61	-0.2
2,887,108	+		DZA65_RS13450	0.61	+0.4
2,887,109	-		DZA65_RS13450	0.61	+0.4
2,887,109	-		DZA65_RS13450	0.61	+1.3
2,887,109	-		DZA65_RS13450	0.61	-0.3
2,887,109	-		DZA65_RS13450	0.61	+1.6
2,887,129	+		DZA65_RS13450	0.63	-1.2
2,887,129	+		DZA65_RS13450	0.63	+0.4
2,887,129	+		DZA65_RS13450	0.63	+0.4
2,887,129	+		DZA65_RS13450	0.63	-0.8
2,887,130	-		DZA65_RS13450	0.63	-2.4
2,887,130	-		DZA65_RS13450	0.63	-0.1
2,887,130	-				-0.2
2,887,152	+		DZA65_RS13450	0.65	+1.5
2,887,152	+		DZA65_RS13450	0.65	+0.8
2,887,152	+		DZA65_RS13450	0.65	+0.2
2,887,152	+		DZA65_RS13450	0.65	-1.1
2,887,153	-		DZA65_RS13450	0.65	-1.3
2,887,153	-		DZA65_RS13450	0.65	+0.4
2,887,153	-		DZA65_RS13450	0.65	-0.2
2,887,153	-		DZA65_RS13450	0.65	-0.4
2,887,153	-		DZA65_RS13450	0.65	-0.5
2,887,153	-		DZA65_RS13450	0.65	+0.7
2,887,155	+		DZA65_RS13450	0.65	-0.0
2,887,156	-		DZA65_RS13450	0.65	-0.6
2,887,156	-		DZA65_RS13450	0.65	-0.6
2,887,213	-		DZA65_RS13450	0.70	+2.0
2,887,225	+		DZA65_RS13450	0.71	+0.4
2,887,225	+		DZA65_RS13450	0.71	+1.7
2,887,225	+		DZA65_RS13450	0.71	+0.5
2,887,225	+		DZA65_RS13450	0.71	-0.6
2,887,225	+		DZA65_RS13450	0.71	-0.2
2,887,225	+		DZA65_RS13450	0.71	+0.3
2,887,226	-		DZA65_RS13450	0.71	+0.4
2,887,226	-				-1.2
2,887,226	-		DZA65_RS13450	0.71	+2.2
2,887,226	-		DZA65_RS13450	0.71	-1.6
2,887,290	+		DZA65_RS13450	0.76	-0.2
2,887,290	+		DZA65_RS13450	0.76	-0.2
2,887,290	+		DZA65_RS13450	0.76	+0.1
2,887,291	-		DZA65_RS13450	0.77	-0.1
2,887,293	+		DZA65_RS13450	0.77	+0.2
2,887,294	-		DZA65_RS13450	0.77	-0.9
2,887,294	-		DZA65_RS13450	0.77	-0.5
2,887,294	-		DZA65_RS13450	0.77	-1.8
2,887,339	-		DZA65_RS13450	0.81	-0.3
2,887,339	-		DZA65_RS13450	0.81	+0.4
2,887,339	-		DZA65_RS13450	0.81	-1.6
2,887,339	-		DZA65_RS13450	0.81	-0.6
2,887,339	-		DZA65_RS13450	0.81	-0.6
2,887,339	-		DZA65_RS13450	0.81	-0.6
2,887,360	-		DZA65_RS13450	0.82	+0.4
2,887,399	-		DZA65_RS13450	0.86	-0.1
2,887,399	-		DZA65_RS13450	0.86	+0.4
2,887,476	+				+1.2
2,887,476	+				+0.1
2,887,476	+				-0.5
2,887,476	+				-1.2
2,887,477	-				-2.1
2,887,480	+				+0.7
2,887,480	+				+0.4
2,887,480	+				-1.4
2,887,481	-				-1.8
2,887,481	-				-0.2
2,887,481	-				+0.4
2,887,567	+				-1.4
2,887,567	+				+0.4
2,887,568	-				-0.0
2,887,568	-				+0.8
2,887,568	-				-0.4
2,887,572	-				-0.6
2,887,622	+				-1.6
2,887,622	+				+1.6
2,887,622	+				+0.2
2,887,623	-				-0.6
2,887,623	-				+0.2
2,887,623	-				+0.4
2,887,623	-				-0.8
2,887,648	-				+1.3
2,887,684	+				-0.2
2,887,687	+				-0.2
2,887,688	-				-1.1
2,887,742	-		DZA65_RS13455	0.13	-1.9
2,887,817	-		DZA65_RS13455	0.25	-0.8
2,887,817	-		DZA65_RS13455	0.25	-2.4
2,887,824	-		DZA65_RS13455	0.26	-1.6
2,887,925	+		DZA65_RS13455	0.42	+0.1
2,887,925	+		DZA65_RS13455	0.42	+0.5
2,887,925	+		DZA65_RS13455	0.42	+1.1
2,887,926	-		DZA65_RS13455	0.42	+0.8
2,887,926	-		DZA65_RS13455	0.42	+0.1
2,887,926	-		DZA65_RS13455	0.42	-0.2
2,887,926	-		DZA65_RS13455	0.42	-0.9
2,887,926	-		DZA65_RS13455	0.42	+0.4
2,887,926	-		DZA65_RS13455	0.42	-0.2
2,887,926	-		DZA65_RS13455	0.42	-0.6
2,887,928	+		DZA65_RS13455	0.42	+0.2
2,887,928	+		DZA65_RS13455	0.42	+1.0
2,887,929	-		DZA65_RS13455	0.42	-2.2
2,888,027	+		DZA65_RS13455	0.58	-1.8
2,888,085	+		DZA65_RS13455	0.67	-0.4
2,888,086	-		DZA65_RS13455	0.67	-1.0
2,888,111	+		DZA65_RS13455	0.71	+0.2
2,888,111	+		DZA65_RS13455	0.71	+1.4
2,888,111	+		DZA65_RS13455	0.71	+0.7
2,888,111	+		DZA65_RS13455	0.71	-0.6
2,888,111	+		DZA65_RS13455	0.71	+0.2
2,888,111	+		DZA65_RS13455	0.71	-1.6
2,888,111	+		DZA65_RS13455	0.71	+3.0
2,888,111	+		DZA65_RS13455	0.71	-1.1
2,888,112	-		DZA65_RS13455	0.71	-0.4
2,888,112	-		DZA65_RS13455	0.71	-1.2
2,888,172	-		DZA65_RS13455	0.80	-0.9
2,888,273	-				-0.7
2,888,273	-				+0.7
2,888,281	+				-1.2
2,888,281	+				-1.6
2,888,281	+				+0.4
2,888,281	+				+1.4
2,888,282	-				-3.1
2,888,289	+				+1.6
2,888,289	+				+0.4
2,888,349	+				-2.0
2,888,349	+				-0.2
2,888,349	+				+0.0
2,888,350	-				+3.7
2,888,411	-				+1.0
2,888,414	-		DZA65_RS13460	0.10	-1.6
2,888,414	-		DZA65_RS13460	0.10	-0.0
2,888,414	-		DZA65_RS13460	0.10	+0.4
2,888,456	+		DZA65_RS13460	0.18	+1.0
2,888,459	+		DZA65_RS13460	0.18	-0.6
2,888,512	+		DZA65_RS13460	0.28	-0.8
2,888,512	+		DZA65_RS13460	0.28	-0.4
2,888,512	+		DZA65_RS13460	0.28	+0.1
2,888,513	-		DZA65_RS13460	0.28	+0.6
2,888,513	-		DZA65_RS13460	0.28	+0.1
2,888,534	+		DZA65_RS13460	0.32	+2.0
2,888,535	-		DZA65_RS13460	0.32	-0.6
2,888,561	+		DZA65_RS13460	0.37	-1.1
2,888,561	+		DZA65_RS13460	0.37	+1.2
2,888,561	+		DZA65_RS13460	0.37	+0.8
2,888,562	-		DZA65_RS13460	0.37	+0.4
2,888,562	-		DZA65_RS13460	0.37	+0.2
2,888,562	-		DZA65_RS13460	0.37	+1.2
2,888,562	-		DZA65_RS13460	0.37	+0.3
2,888,566	+		DZA65_RS13460	0.38	-0.4
2,888,566	+		DZA65_RS13460	0.38	+0.6
2,888,566	+		DZA65_RS13460	0.38	-0.1
2,888,567	-		DZA65_RS13460	0.38	+1.0
2,888,603	+		DZA65_RS13460	0.45	-0.6
2,888,603	+		DZA65_RS13460	0.45	-1.2
2,888,604	-		DZA65_RS13460	0.45	-1.4
2,888,604	-		DZA65_RS13460	0.45	+0.6
2,888,604	-		DZA65_RS13460	0.45	-0.3
2,888,631	+		DZA65_RS13460	0.50	+0.4
2,888,631	+		DZA65_RS13460	0.50	-2.1
2,888,631	+		DZA65_RS13460	0.50	+1.2
2,888,632	-		DZA65_RS13460	0.50	+0.1
2,888,632	-		DZA65_RS13460	0.50	-1.6
2,888,632	-		DZA65_RS13460	0.50	-0.4
2,888,632	-		DZA65_RS13460	0.50	-2.8
2,888,663	+		DZA65_RS13460	0.56	-1.2
2,888,664	-		DZA65_RS13460	0.56	+1.1
2,888,681	-		DZA65_RS13460	0.59	-0.6
2,888,709	+		DZA65_RS13460	0.64	-0.3
2,888,710	-		DZA65_RS13460	0.64	+0.7
2,888,723	+		DZA65_RS13460	0.66	-1.0
2,888,723	+		DZA65_RS13460	0.66	+0.0
2,888,723	+		DZA65_RS13460	0.66	+0.0
2,888,723	+		DZA65_RS13460	0.66	+0.9
2,888,723	+		DZA65_RS13460	0.66	+0.2
2,888,723	+		DZA65_RS13460	0.66	-0.6
2,888,723	+		DZA65_RS13460	0.66	-2.0
2,888,724	-		DZA65_RS13460	0.67	+0.1
2,888,724	-		DZA65_RS13460	0.67	+0.3
2,888,724	-		DZA65_RS13460	0.67	-0.2
2,888,724	-		DZA65_RS13460	0.67	-1.2
2,888,724	-		DZA65_RS13460	0.67	+1.7
2,888,724	-		DZA65_RS13460	0.67	+2.6
2,888,724	-		DZA65_RS13460	0.67	-0.6
2,888,725	+		DZA65_RS13460	0.67	-0.4
2,888,725	+		DZA65_RS13460	0.67	-0.3
2,888,725	+		DZA65_RS13460	0.67	+1.8
2,888,725	+		DZA65_RS13460	0.67	-0.4
2,888,726	-		DZA65_RS13460	0.67	-0.3
2,888,726	-		DZA65_RS13460	0.67	-1.7
2,888,774	+		DZA65_RS13460	0.76	-0.4
2,888,774	+		DZA65_RS13460	0.76	-1.3
2,888,787	-		DZA65_RS13460	0.78	+0.4
2,888,787	-		DZA65_RS13460	0.78	-0.2
2,888,891	+				-2.6
2,888,907	-				+0.2
2,888,964	-				-0.0
2,888,967	+				+2.4
2,888,967	+				-0.9
2,888,967	+				-0.0
2,888,967	+				+0.8
2,888,968	-				-0.6
2,888,968	-				-0.0
2,888,968	-				+0.5
2,888,968	-				+0.4
2,888,989	-				+1.0
2,888,989	-				+0.2
2,889,020	+				-1.0
2,889,103	+				-0.9
2,889,104	-				+0.4
2,889,107	+				-2.8
2,889,107	+				-2.6
2,889,107	+				+0.8
2,889,107	+				+1.6
2,889,107	+				-1.3
2,889,107	+				+1.4
2,889,107	+				-0.9
2,889,107	+				-1.6
2,889,107	+				+0.6
2,889,107	+				-1.5
2,889,107	+				+0.1
2,889,107	+				-0.0
2,889,107	+				+0.4
2,889,107	+				-0.6
2,889,108	-				-0.6
2,889,108	-				+0.4
2,889,108	-				-0.1
2,889,108	-				-2.2
2,889,108	-				-0.3
2,889,108	-				-0.1
2,889,108	-				-0.4
2,889,108	-				+0.8
2,889,113	-				+1.8
2,889,113	-				+0.2
2,889,115	+				+0.0
2,889,116	-				+1.0
2,889,116	-				-0.6
2,889,116	-				+2.0
2,889,118	+				-0.1
2,889,118	+				+1.8
2,889,118	+				-0.3
2,889,119	-				+0.5
2,889,119	-				-1.8
2,889,119	-				-0.0
2,889,129	+				+0.0
2,889,174	-				-0.6
2,889,174	-				-3.0
2,889,177	+				+0.6
2,889,178	-				-1.6
2,889,178	-				-3.1
2,889,178	-				-1.2
2,889,178	-				-2.0
2,889,178	-				+0.1
2,889,198	+				-1.2
2,889,199	-				-0.4
2,889,199	-				-1.4
2,889,227	+				-1.4
2,889,227	+				+1.3
2,889,227	+				-0.2
2,889,228	-				+0.2
2,889,228	-				-1.8
2,889,228	-				-0.1
2,889,231	-				+0.8
2,889,266	+				-1.4
2,889,266	+				-2.0
2,889,266	+				-0.6
2,889,266	+				+0.7
2,889,266	+				-1.8
2,889,266	+				-0.2
2,889,267	-				-1.0
2,889,267	-				-1.4
2,889,267	-				+1.5
2,889,267	-				+1.8
2,889,267	-				+0.7
2,889,267	-				-1.0
2,889,267	-				-0.6
2,889,267	-				+1.5
2,889,267	-				-2.6
2,889,267	-				-0.8