Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12995

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,784,351	-				-0.1
2,784,351	-				-0.4
2,784,351	-				-0.3
2,784,351	-				+0.3
2,784,359	+				+0.7
2,784,359	+				-0.9
2,784,360	-				+1.0
2,784,371	-				-1.1
2,784,394	+				-0.1
2,784,394	+				+0.1
2,784,395	-				+1.3
2,784,412	-				+0.3
2,784,419	+				-1.7
2,784,419	+				+0.3
2,784,419	+				+0.0
2,784,419	+				+1.0
2,784,419	+				-1.7
2,784,419	+				-0.4
2,784,419	+				-0.3
2,784,419	+				-0.7
2,784,420	-				+1.6
2,784,420	-				+0.8
2,784,420	-				-0.1
2,784,420	-				-1.3
2,784,420	-				-2.7
2,784,425	+				-0.3
2,784,444	+				-2.0
2,784,444	+				+0.5
2,784,448	+				+0.5
2,784,448	+				-1.7
2,784,448	+				-0.1
2,784,448	+				-0.0
2,784,448	+				-0.4
2,784,449	-				+0.2
2,784,449	-				-1.5
2,784,449	-				-1.0
2,784,449	-				-1.0
2,784,469	-				+0.3
2,784,521	-		DZA65_RS12985	0.23	+0.2
2,784,544	-		DZA65_RS12985	0.34	+1.0
2,784,548	-		DZA65_RS12985	0.36	+0.6
2,784,617	-		DZA65_RS12985	0.69	+1.9
2,784,665	+				-1.7
2,784,666	-				-0.4
2,784,854	-		DZA65_RS12990	0.39	+0.9
2,784,854	-		DZA65_RS12990	0.39	-1.6
2,784,854	-		DZA65_RS12990	0.39	-0.1
2,784,927	+		DZA65_RS12990	0.55	+0.3
2,784,927	+		DZA65_RS12990	0.55	-1.2
2,784,927	+		DZA65_RS12990	0.55	+1.2
2,784,927	+		DZA65_RS12990	0.55	+0.8
2,784,927	+		DZA65_RS12990	0.55	+0.6
2,784,927	+		DZA65_RS12990	0.55	-1.4
2,784,928	-		DZA65_RS12990	0.55	+0.0
2,784,928	-		DZA65_RS12990	0.55	-0.7
2,784,928	-		DZA65_RS12990	0.55	-0.7
2,784,928	-		DZA65_RS12990	0.55	+1.4
2,784,928	-		DZA65_RS12990	0.55	+2.3
2,784,928	-		DZA65_RS12990	0.55	+0.0
2,784,928	-		DZA65_RS12990	0.55	+0.0
2,784,928	-		DZA65_RS12990	0.55	-0.2
2,784,928	-		DZA65_RS12990	0.55	-0.1
2,784,928	-		DZA65_RS12990	0.55	-1.3
2,784,996	+		DZA65_RS12990	0.69	-0.9
2,784,996	+		DZA65_RS12990	0.69	-0.7
2,784,997	-		DZA65_RS12990	0.70	+0.0
2,784,997	-		DZA65_RS12990	0.70	+1.6
2,784,999	+		DZA65_RS12990	0.70	-0.7
2,784,999	+		DZA65_RS12990	0.70	-1.7
2,784,999	+		DZA65_RS12990	0.70	+1.0
2,784,999	+		DZA65_RS12990	0.70	+1.3
2,784,999	+		DZA65_RS12990	0.70	-1.2
2,784,999	+		DZA65_RS12990	0.70	+1.9
2,784,999	+		DZA65_RS12990	0.70	+0.0
2,784,999	+		DZA65_RS12990	0.70	+2.9
2,784,999	+		DZA65_RS12990	0.70	-2.5
2,784,999	+		DZA65_RS12990	0.70	+0.3
2,785,000	-		DZA65_RS12990	0.70	-1.0
2,785,000	-		DZA65_RS12990	0.70	-2.0
2,785,000	-		DZA65_RS12990	0.70	+0.7
2,785,000	-		DZA65_RS12990	0.70	+0.9
2,785,000	-		DZA65_RS12990	0.70	-0.3
2,785,000	-		DZA65_RS12990	0.70	+0.5
2,785,000	-		DZA65_RS12990	0.70	+0.3
2,785,005	+		DZA65_RS12990	0.71	+0.3
2,785,005	+		DZA65_RS12990	0.71	-2.0
2,785,005	+		DZA65_RS12990	0.71	-1.3
2,785,005	+		DZA65_RS12990	0.71	-0.1
2,785,005	+		DZA65_RS12990	0.71	-2.5
2,785,005	+		DZA65_RS12990	0.71	-0.6
2,785,005	+		DZA65_RS12990	0.71	-1.5
2,785,005	+		DZA65_RS12990	0.71	+1.9
2,785,005	+		DZA65_RS12990	0.71	-0.4
2,785,006	-		DZA65_RS12990	0.72	-0.6
2,785,006	-		DZA65_RS12990	0.72	-0.4
2,785,006	-		DZA65_RS12990	0.72	-1.5
2,785,006	-		DZA65_RS12990	0.72	-1.7
2,785,006	-		DZA65_RS12990	0.72	+0.6
2,785,006	-		DZA65_RS12990	0.72	-0.3
2,785,006	-		DZA65_RS12990	0.72	+0.7
2,785,049	+		DZA65_RS12990	0.81	-0.1
2,785,049	+		DZA65_RS12990	0.81	+0.7
2,785,049	+		DZA65_RS12990	0.81	+1.5
2,785,050	-		DZA65_RS12990	0.81	+0.8
2,785,114	+				+0.0
2,785,190	+				-1.7
2,785,190	+				+0.3
2,785,190	+				+0.5
2,785,190	+				+0.2
2,785,191	-				+0.5
2,785,191	-				-0.4
2,785,191	-				-0.8
2,785,191	-				-0.2
2,785,191	-				-1.9
2,785,278	+				-0.9
2,785,278	+				-0.7
2,785,279	-				-2.7
2,785,312	-				-0.3
2,785,408	+				-0.7
2,785,408	+				-2.7
2,785,408	+				-0.4
2,785,409	-				-0.0
2,785,409	-				-1.7
2,785,726	+		DZA65_RS12995	0.23	-0.3
2,785,726	+		DZA65_RS12995	0.23	-0.7
2,785,726	+		DZA65_RS12995	0.23	-0.9
2,785,727	-		DZA65_RS12995	0.23	-0.3
2,785,731	+		DZA65_RS12995	0.23	+0.0
2,785,767	-		DZA65_RS12995	0.25	-0.7
2,785,783	-		DZA65_RS12995	0.26	-2.5
2,785,915	+		DZA65_RS12995	0.33	-1.4
2,785,915	+		DZA65_RS12995	0.33	-1.4
2,785,915	+		DZA65_RS12995	0.33	-0.1
2,785,916	-				-0.7
2,785,916	-		DZA65_RS12995	0.33	-1.4
2,786,212	+		DZA65_RS12995	0.48	-1.0
2,786,213	-		DZA65_RS12995	0.48	-1.2
2,786,213	-		DZA65_RS12995	0.48	-1.9
2,786,268	+		DZA65_RS12995	0.51	+0.3
2,786,271	+		DZA65_RS12995	0.51	-0.9
2,786,512	+		DZA65_RS12995	0.64	-0.8
2,786,513	-		DZA65_RS12995	0.64	-2.9
2,786,580	+		DZA65_RS12995	0.67	-2.4
2,786,581	-				-2.0
2,786,677	-		DZA65_RS12995	0.72	+0.3
2,787,008	+		DZA65_RS12995	0.89	+0.6
2,787,280	+				-0.4
2,787,281	-				-0.7
2,787,281	-				+0.2
2,787,289	+				-0.5
2,787,290	-				-1.1
2,787,372	+				+0.8
2,787,372	+				-1.7
2,787,373	-				+1.1
2,787,387	+				+1.8
2,787,466	+		DZA65_RS13000	0.17	-0.2
2,787,466	+		DZA65_RS13000	0.17	+0.9
2,787,466	+		DZA65_RS13000	0.17	-1.3
2,787,466	+		DZA65_RS13000	0.17	+1.7
2,787,467	-		DZA65_RS13000	0.17	+0.7
2,787,506	+		DZA65_RS13000	0.21	-0.0
2,787,507	-		DZA65_RS13000	0.21	+1.3
2,787,542	+		DZA65_RS13000	0.25	-0.2
2,787,542	+		DZA65_RS13000	0.25	+1.0
2,787,542	+		DZA65_RS13000	0.25	+1.3
2,787,542	+		DZA65_RS13000	0.25	-0.4
2,787,543	-		DZA65_RS13000	0.25	-0.2
2,787,543	-		DZA65_RS13000	0.25	+0.0
2,787,597	+				+0.3
2,787,640	+		DZA65_RS13000	0.36	-0.6
2,787,641	-		DZA65_RS13000	0.36	+0.5
2,787,656	+		DZA65_RS13000	0.37	+0.9
2,787,656	+		DZA65_RS13000	0.37	-0.1
2,787,656	+		DZA65_RS13000	0.37	-0.7
2,787,656	+		DZA65_RS13000	0.37	+0.4
2,787,657	-		DZA65_RS13000	0.37	-1.0
2,787,657	-		DZA65_RS13000	0.37	-1.3
2,787,657	-		DZA65_RS13000	0.37	-1.5
2,787,657	-		DZA65_RS13000	0.37	-1.7
2,787,768	-		DZA65_RS13000	0.50	+1.0
2,787,873	+		DZA65_RS13000	0.61	+0.6
2,787,873	+		DZA65_RS13000	0.61	-0.5
2,787,874	-		DZA65_RS13000	0.61	-1.6
2,787,874	-		DZA65_RS13000	0.61	+0.1
2,787,874	-		DZA65_RS13000	0.61	+0.5
2,787,919	+		DZA65_RS13000	0.66	+2.0
2,787,920	-		DZA65_RS13000	0.66	-0.6
2,788,126	-		DZA65_RS13000	0.89	+2.5
2,788,126	-		DZA65_RS13000	0.89	+0.6