Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12780

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,733,932	+		DZA65_RS12775	0.35	+0.6
2,733,933	-		DZA65_RS12775	0.35	-0.7
2,733,965	-		DZA65_RS12775	0.39	-0.8
2,733,965	-		DZA65_RS12775	0.39	-0.1
2,733,976	-		DZA65_RS12775	0.41	+0.9
2,733,996	+		DZA65_RS12775	0.43	+1.9
2,733,996	+		DZA65_RS12775	0.43	+0.6
2,734,105	-		DZA65_RS12775	0.56	-1.5
2,734,212	+		DZA65_RS12775	0.69	+0.6
2,734,219	+		DZA65_RS12775	0.70	+0.9
2,734,333	-		DZA65_RS12775	0.84	-0.1
2,734,333	-		DZA65_RS12775	0.84	-1.4
2,734,495	+				+0.1
2,734,508	-				-0.6
2,734,574	+				-0.7
2,734,586	-				-0.7
2,734,595	-				+1.3
2,734,611	+				-1.5
2,734,611	+				-0.2
2,734,611	+				-0.7
2,734,611	+				+1.8
2,734,611	+				+0.3
2,734,612	-				-0.8
2,734,626	+				+1.0
2,734,626	+				+1.9
2,734,627	-				+0.2
2,734,627	-				+0.6
2,734,627	-				-0.6
2,734,635	+				+0.6
2,734,635	+				+0.5
2,734,636	-				+0.5
2,734,703	+				+0.3
2,734,733	+				+0.4
2,734,733	+				+1.0
2,734,738	+				-1.0
2,734,738	+				+1.1
2,734,739	-				-0.7
2,734,739	-				+0.3
2,734,739	-				-2.1
2,734,743	+				+0.6
2,734,744	-				+0.3
2,734,744	-				-1.8
2,734,746	-				-1.0
2,734,746	-				+0.1
2,734,751	+				-1.0
2,734,752	-				+0.4
2,734,752	-				+1.9
2,734,769	+				-1.7
2,734,775	+				+1.6
2,734,776	-				+1.3
2,734,776	-				+0.3
2,734,776	-				+0.1
2,734,801	-				-0.6
2,734,887	+				+0.3
2,734,888	-				-1.5
2,734,926	+		DZA65_RS12780	0.10	+1.2
2,734,927	-		DZA65_RS12780	0.10	+1.5
2,734,927	-		DZA65_RS12780	0.10	-0.2
2,734,953	+		DZA65_RS12780	0.12	-0.0
2,734,953	+		DZA65_RS12780	0.12	-1.5
2,734,954	-		DZA65_RS12780	0.12	+1.1
2,734,954	-		DZA65_RS12780	0.12	-1.1
2,734,954	-		DZA65_RS12780	0.12	-0.7
2,734,975	+		DZA65_RS12780	0.13	+0.3
2,734,976	-				-0.7
2,734,976	-		DZA65_RS12780	0.14	-1.5
2,734,997	+				+1.0
2,734,997	+		DZA65_RS12780	0.15	+0.6
2,734,997	+		DZA65_RS12780	0.15	+1.8
2,734,998	-		DZA65_RS12780	0.15	-0.4
2,734,998	-		DZA65_RS12780	0.15	-1.5
2,734,998	-		DZA65_RS12780	0.15	-0.6
2,734,998	-		DZA65_RS12780	0.15	-0.5
2,734,998	-		DZA65_RS12780	0.15	-0.7
2,735,003	+		DZA65_RS12780	0.15	-0.1
2,735,003	+		DZA65_RS12780	0.15	+0.6
2,735,003	+		DZA65_RS12780	0.15	+0.0
2,735,003	+		DZA65_RS12780	0.15	+0.1
2,735,003	+		DZA65_RS12780	0.15	+0.3
2,735,003	+		DZA65_RS12780	0.15	+0.7
2,735,004	-		DZA65_RS12780	0.15	-0.1
2,735,006	-		DZA65_RS12780	0.15	-0.5
2,735,006	-		DZA65_RS12780	0.15	-0.3
2,735,037	+		DZA65_RS12780	0.17	+0.5
2,735,037	+		DZA65_RS12780	0.17	-1.7
2,735,037	+		DZA65_RS12780	0.17	+1.5
2,735,038	-		DZA65_RS12780	0.18	+0.9
2,735,038	-		DZA65_RS12780	0.18	+0.8
2,735,038	-		DZA65_RS12780	0.18	-0.5
2,735,038	-		DZA65_RS12780	0.18	-1.4
2,735,038	-		DZA65_RS12780	0.18	-0.1
2,735,038	-		DZA65_RS12780	0.18	-0.3
2,735,038	-		DZA65_RS12780	0.18	+0.5
2,735,049	+		DZA65_RS12780	0.18	-0.1
2,735,049	+		DZA65_RS12780	0.18	-1.1
2,735,049	+		DZA65_RS12780	0.18	-1.3
2,735,049	+		DZA65_RS12780	0.18	+0.1
2,735,049	+		DZA65_RS12780	0.18	+1.0
2,735,050	-		DZA65_RS12780	0.18	+0.3
2,735,050	-		DZA65_RS12780	0.18	+0.0
2,735,077	+		DZA65_RS12780	0.20	+0.6
2,735,077	+		DZA65_RS12780	0.20	-0.0
2,735,077	+		DZA65_RS12780	0.20	+0.7
2,735,077	+		DZA65_RS12780	0.20	+1.0
2,735,078	-		DZA65_RS12780	0.20	-0.1
2,735,078	-		DZA65_RS12780	0.20	+0.3
2,735,078	-		DZA65_RS12780	0.20	+0.7
2,735,078	-		DZA65_RS12780	0.20	+0.3
2,735,283	+		DZA65_RS12780	0.33	-0.1
2,735,284	-		DZA65_RS12780	0.33	-1.0
2,735,317	+		DZA65_RS12780	0.36	+0.3
2,735,362	+				+0.7
2,735,393	-		DZA65_RS12780	0.40	-0.1
2,735,410	+		DZA65_RS12780	0.42	+0.6
2,735,410	+		DZA65_RS12780	0.42	+1.3
2,735,410	+		DZA65_RS12780	0.42	+0.0
2,735,411	-		DZA65_RS12780	0.42	-2.5
2,735,411	-		DZA65_RS12780	0.42	+2.6
2,735,411	-		DZA65_RS12780	0.42	-2.3
2,735,413	+		DZA65_RS12780	0.42	-0.6
2,735,413	+		DZA65_RS12780	0.42	-1.1
2,735,414	-		DZA65_RS12780	0.42	-0.4
2,735,414	-		DZA65_RS12780	0.42	+1.1
2,735,414	-		DZA65_RS12780	0.42	-2.1
2,735,431	+		DZA65_RS12780	0.43	+0.1
2,735,431	+		DZA65_RS12780	0.43	+0.6
2,735,431	+		DZA65_RS12780	0.43	-0.3
2,735,432	-		DZA65_RS12780	0.43	+1.3
2,735,432	-		DZA65_RS12780	0.43	-0.3
2,735,434	+		DZA65_RS12780	0.43	+0.7
2,735,434	+		DZA65_RS12780	0.43	+0.7
2,735,435	-		DZA65_RS12780	0.43	-0.1
2,735,435	-		DZA65_RS12780	0.43	+1.3
2,735,435	-		DZA65_RS12780	0.43	+1.8
2,735,435	-		DZA65_RS12780	0.43	-1.2
2,735,435	-		DZA65_RS12780	0.43	-0.4
2,735,435	-		DZA65_RS12780	0.43	-1.2
2,735,435	-		DZA65_RS12780	0.43	-0.3
2,735,435	-		DZA65_RS12780	0.43	+0.2
2,735,435	-		DZA65_RS12780	0.43	-1.3
2,735,435	-		DZA65_RS12780	0.43	-0.8
2,735,435	-		DZA65_RS12780	0.43	+1.0
2,735,451	-				-0.7
2,735,542	+		DZA65_RS12780	0.50	+0.5
2,735,565	-		DZA65_RS12780	0.52	-0.2
2,735,569	+		DZA65_RS12780	0.52	-0.2
2,735,570	-		DZA65_RS12780	0.52	+0.0
2,735,579	-		DZA65_RS12780	0.52	+0.2
2,735,616	+		DZA65_RS12780	0.55	-0.3
2,735,633	-		DZA65_RS12780	0.56	-0.8
2,735,633	-		DZA65_RS12780	0.56	-0.3
2,735,633	-		DZA65_RS12780	0.56	+1.9
2,735,636	+		DZA65_RS12780	0.56	+0.5
2,735,636	+		DZA65_RS12780	0.56	+0.3
2,735,636	+		DZA65_RS12780	0.56	+0.3
2,735,636	+		DZA65_RS12780	0.56	-2.3
2,735,636	+		DZA65_RS12780	0.56	+0.3
2,735,636	+		DZA65_RS12780	0.56	-1.1
2,735,637	-		DZA65_RS12780	0.56	-2.0
2,735,637	-		DZA65_RS12780	0.56	-0.4
2,735,637	-		DZA65_RS12780	0.56	-0.2
2,735,637	-		DZA65_RS12780	0.56	+1.0
2,735,637	-		DZA65_RS12780	0.56	+0.7
2,735,637	-		DZA65_RS12780	0.56	-1.0
2,735,637	-		DZA65_RS12780	0.56	+2.3
2,735,638	+		DZA65_RS12780	0.56	+0.4
2,735,638	+		DZA65_RS12780	0.56	-2.3
2,735,638	+		DZA65_RS12780	0.56	-0.1
2,735,639	-		DZA65_RS12780	0.56	+0.8
2,735,639	-		DZA65_RS12780	0.56	-0.2
2,735,639	-		DZA65_RS12780	0.56	-1.6
2,735,644	+		DZA65_RS12780	0.57	+1.3
2,735,644	+		DZA65_RS12780	0.57	+0.2
2,735,645	-		DZA65_RS12780	0.57	+0.1
2,735,688	+		DZA65_RS12780	0.59	+0.3
2,735,689	-		DZA65_RS12780	0.60	+0.5
2,735,689	-		DZA65_RS12780	0.60	-2.3
2,735,723	+		DZA65_RS12780	0.62	-0.5
2,735,723	+		DZA65_RS12780	0.62	-0.3
2,735,723	+		DZA65_RS12780	0.62	-0.1
2,735,723	+		DZA65_RS12780	0.62	+0.9
2,735,723	+		DZA65_RS12780	0.62	+2.6
2,735,724	-		DZA65_RS12780	0.62	+0.2
2,735,724	-		DZA65_RS12780	0.62	+1.6
2,735,795	-		DZA65_RS12780	0.66	+0.2
2,735,795	-		DZA65_RS12780	0.66	-2.1
2,735,795	-		DZA65_RS12780	0.66	-0.1
2,735,822	-				-0.5
2,735,822	-		DZA65_RS12780	0.68	+0.1
2,735,856	+		DZA65_RS12780	0.70	+0.7
2,735,857	-		DZA65_RS12780	0.70	+0.5
2,735,857	-		DZA65_RS12780	0.70	+0.3
2,735,866	+		DZA65_RS12780	0.71	+0.0
2,735,867	-		DZA65_RS12780	0.71	-0.5
2,735,867	-		DZA65_RS12780	0.71	+0.6
2,735,890	+		DZA65_RS12780	0.72	+0.4
2,735,891	-		DZA65_RS12780	0.73	+1.9
2,735,891	-		DZA65_RS12780	0.73	+1.3
2,735,891	-		DZA65_RS12780	0.73	+0.4
2,735,973	+		DZA65_RS12780	0.78	-0.7
2,735,973	+		DZA65_RS12780	0.78	+0.5
2,735,974	-		DZA65_RS12780	0.78	-1.7
2,735,977	+		DZA65_RS12780	0.78	-2.3
2,735,977	+		DZA65_RS12780	0.78	-1.1
2,735,978	-		DZA65_RS12780	0.78	-2.1
2,735,978	-		DZA65_RS12780	0.78	+0.6
2,735,993	+		DZA65_RS12780	0.79	+0.3
2,735,993	+		DZA65_RS12780	0.79	-1.5
2,735,993	+		DZA65_RS12780	0.79	+0.0
2,735,993	+		DZA65_RS12780	0.79	-2.9
2,735,993	+		DZA65_RS12780	0.79	+0.8
2,735,994	-		DZA65_RS12780	0.79	-1.7
2,736,001	+		DZA65_RS12780	0.80	-0.1
2,736,001	+		DZA65_RS12780	0.80	+0.6
2,736,063	+		DZA65_RS12780	0.84	-0.6
2,736,064	-		DZA65_RS12780	0.84	+0.1
2,736,064	-		DZA65_RS12780	0.84	-1.3
2,736,064	-		DZA65_RS12780	0.84	+0.3
2,736,107	-		DZA65_RS12780	0.86	+0.3
2,736,179	-				+0.8
2,736,248	+				-0.1
2,736,249	-				-0.2
2,736,249	-				-0.3
2,736,260	+				-1.0
2,736,260	+				-0.4
2,736,260	+				-0.2
2,736,261	-				+0.1
2,736,261	-				+0.5
2,736,297	-				-0.2
2,736,297	-				-0.1
2,736,299	+				+0.1
2,736,299	+				+2.0
2,736,307	+				+1.7
2,736,307	+				+0.7
2,736,307	+				-1.1
2,736,307	+				-0.1
2,736,307	+				-1.0
2,736,308	-				+0.3
2,736,308	-				-0.1
2,736,308	-				+3.3
2,736,308	-				+0.1
2,736,308	-				-1.7
2,736,371	-				+0.5
2,736,376	+				-0.5
2,736,376	+				-0.7
2,736,376	+				+0.6
2,736,377	-				+1.3
2,736,377	-				-0.5
2,736,377	-				+0.6
2,736,377	-				+0.1
2,736,377	-				+0.5
2,736,380	+				-0.4
2,736,380	+				+0.3
2,736,380	+				+0.3
2,736,380	+				+0.7
2,736,380	+				+1.1
2,736,380	+				-1.3
2,736,380	+				+0.5
2,736,380	+				+0.3
2,736,380	+				-0.6
2,736,380	+				-0.3
2,736,380	+				-0.4
2,736,380	+				-1.7
2,736,380	+				-1.9
2,736,381	-				-0.1
2,736,381	-				-0.6
2,736,381	-				-0.7
2,736,381	-				-0.3
2,736,381	-				+0.7
2,736,381	-				+0.3
2,736,381	-				+0.9
2,736,381	-				-1.1
2,736,381	-				+0.3
2,736,470	+				+1.3
2,736,470	+				+0.5
2,736,470	+				+0.3
2,736,485	+		DZA65_RS12785	0.12	+0.3
2,736,485	+		DZA65_RS12785	0.12	-0.6
2,736,485	+		DZA65_RS12785	0.12	-0.1
2,736,485	+		DZA65_RS12785	0.12	+0.2
2,736,485	+		DZA65_RS12785	0.12	+0.9
2,736,485	+		DZA65_RS12785	0.12	-2.3
2,736,485	+		DZA65_RS12785	0.12	+1.4
2,736,486	-		DZA65_RS12785	0.12	-1.0
2,736,486	-		DZA65_RS12785	0.12	-0.6
2,736,486	-		DZA65_RS12785	0.12	-0.2
2,736,555	+		DZA65_RS12785	0.22	+2.1
2,736,555	+		DZA65_RS12785	0.22	-0.1
2,736,618	+		DZA65_RS12785	0.30	-1.3
2,736,619	-		DZA65_RS12785	0.30	-2.1
2,736,619	-		DZA65_RS12785	0.30	-0.5
2,736,643	+		DZA65_RS12785	0.34	-2.1
2,736,643	+		DZA65_RS12785	0.34	+0.8
2,736,643	+		DZA65_RS12785	0.34	+0.0
2,736,643	+		DZA65_RS12785	0.34	-0.8
2,736,644	-		DZA65_RS12785	0.34	+1.3
2,736,644	-		DZA65_RS12785	0.34	+0.3
2,736,644	-		DZA65_RS12785	0.34	-2.0
2,736,644	-		DZA65_RS12785	0.34	-1.0
2,736,644	-		DZA65_RS12785	0.34	+1.9
2,736,644	-		DZA65_RS12785	0.34	-0.5
2,736,644	-		DZA65_RS12785	0.34	-0.2
2,736,644	-		DZA65_RS12785	0.34	+1.1
2,736,724	+		DZA65_RS12785	0.45	-1.3
2,736,724	+		DZA65_RS12785	0.45	+0.5
2,736,724	+		DZA65_RS12785	0.45	-1.3
2,736,724	+		DZA65_RS12785	0.45	+0.1
2,736,725	-		DZA65_RS12785	0.45	+0.3
2,736,725	-		DZA65_RS12785	0.45	+0.3
2,736,725	-		DZA65_RS12785	0.45	+0.5
2,736,750	+		DZA65_RS12785	0.49	+3.3
2,736,750	+		DZA65_RS12785	0.49	+0.8
2,736,799	+		DZA65_RS12785	0.55	-0.8
2,736,799	+		DZA65_RS12785	0.55	+0.1
2,736,800	-		DZA65_RS12785	0.56	-2.1
2,736,814	-		DZA65_RS12785	0.57	+1.0
2,736,860	+		DZA65_RS12785	0.64	-1.7
2,736,987	+		DZA65_RS12785	0.82	-0.1
2,736,987	+		DZA65_RS12785	0.82	+0.5
2,736,988	-		DZA65_RS12785	0.82	-3.3
2,736,988	-		DZA65_RS12785	0.82	-1.3
2,737,010	-		DZA65_RS12785	0.85	+0.3
2,737,092	+				-3.7
2,737,182	+				+0.0
2,737,182	+				+0.7
2,737,183	-				-0.1
2,737,183	-				-1.4
2,737,183	-				-3.1
2,737,183	-				-0.3
2,737,192	+				-0.7
2,737,192	+				-0.5
2,737,192	+				-0.4
2,737,192	+				-1.5
2,737,192	+				-0.2
2,737,192	+				-1.1
2,737,193	-				+1.9
2,737,193	-				+1.4
2,737,193	-				+0.4
2,737,193	-				-0.3
2,737,193	-				+0.3
2,737,195	+				-0.7
2,737,195	+				+0.3
2,737,195	+				-0.2
2,737,196	-				+0.5
2,737,196	-				+0.9
2,737,202	-				-0.7
2,737,314	+		DZA65_RS12790	0.13	+0.5
2,737,314	+		DZA65_RS12790	0.13	-0.5
2,737,314	+		DZA65_RS12790	0.13	+1.9
2,737,314	+		DZA65_RS12790	0.13	-2.1
2,737,314	+		DZA65_RS12790	0.13	+0.6
2,737,315	-		DZA65_RS12790	0.13	+1.3
2,737,315	-		DZA65_RS12790	0.13	-1.3
2,737,315	-		DZA65_RS12790	0.13	+1.4