Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12710

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,718,538	-		DZA65_RS12700	0.82	+0.7
2,718,538	-		DZA65_RS12700	0.82	-1.0
2,718,538	-		DZA65_RS12700	0.82	+1.3
2,718,609	+		DZA65_RS12700	0.87	-2.3
2,718,609	+		DZA65_RS12700	0.87	+0.6
2,718,609	+		DZA65_RS12700	0.87	+0.8
2,718,610	-		DZA65_RS12700	0.87	-0.2
2,718,610	-		DZA65_RS12700	0.87	+0.1
2,718,610	-		DZA65_RS12700	0.87	+1.1
2,718,610	-		DZA65_RS12700	0.87	+0.7
2,718,610	-		DZA65_RS12700	0.87	-0.3
2,718,610	-		DZA65_RS12700	0.87	+1.1
2,718,610	-		DZA65_RS12700	0.87	+0.9
2,718,613	+		DZA65_RS12700	0.87	-0.6
2,718,613	+		DZA65_RS12700	0.87	+0.3
2,718,613	+		DZA65_RS12700	0.87	+1.8
2,718,613	+		DZA65_RS12700	0.87	-0.1
2,718,638	-		DZA65_RS12700	0.89	-0.8
2,718,804	+				-1.7
2,718,804	+				+0.3
2,718,805	-				-1.3
2,718,805	-				+1.8
2,718,805	-				+2.6
2,718,946	+		DZA65_RS12705	0.22	-0.3
2,718,947	-		DZA65_RS12705	0.22	-0.1
2,718,947	-		DZA65_RS12705	0.22	-1.5
2,718,947	-		DZA65_RS12705	0.22	+0.0
2,718,947	-				+0.3
2,718,947	-		DZA65_RS12705	0.22	-0.1
2,718,948	+		DZA65_RS12705	0.22	+0.3
2,718,948	+		DZA65_RS12705	0.22	-1.9
2,718,949	-		DZA65_RS12705	0.23	-0.7
2,718,949	-		DZA65_RS12705	0.23	-1.0
2,718,949	-		DZA65_RS12705	0.23	-0.2
2,719,026	+		DZA65_RS12705	0.48	-0.3
2,719,072	+		DZA65_RS12705	0.64	+0.0
2,719,072	+		DZA65_RS12705	0.64	-0.0
2,719,075	+		DZA65_RS12705	0.65	-0.7
2,719,093	+		DZA65_RS12705	0.71	-0.1
2,719,148	+		DZA65_RS12705	0.89	+0.8
2,719,157	+				+3.5
2,719,196	+				+2.3
2,719,196	+				-0.9
2,719,197	-				-1.0
2,719,219	+				-2.6
2,719,220	-				+0.0
2,719,228	+				-0.7
2,719,228	+				+0.5
2,719,229	-				+0.3
2,719,232	+				-0.4
2,719,232	+				-1.6
2,719,233	-				-0.4
2,719,233	-				-0.1
2,719,233	-				-0.9
2,719,246	-				+0.5
2,719,336	+				-3.1
2,719,337	-				-0.3
2,719,350	+				-0.5
2,719,354	+				-0.0
2,719,365	-				-0.9
2,719,369	-				+1.0
2,719,405	+				-0.6
2,719,408	+				+1.0
2,719,408	+				+1.4
2,719,409	-				-0.5
2,719,411	+				-1.3
2,719,412	-				+1.1
2,719,424	+				-1.0
2,719,425	-				+1.1
2,719,443	-				-1.7
2,719,443	-				+0.8
2,719,443	-				-1.7
2,719,456	+				+1.7
2,719,457	-				+0.6
2,719,460	+				-1.1
2,719,498	-				+0.8
2,719,511	-				-0.2
2,719,532	+				-0.3
2,719,532	+				+0.7
2,719,532	+				-1.6
2,719,533	-				-0.1
2,719,533	-				-0.5
2,719,533	-				-0.3
2,719,533	-				+0.3
2,719,540	-				+0.3
2,719,540	-				-0.6
2,719,577	+				+0.5
2,719,577	+				-1.7
2,719,577	+				-2.2
2,719,578	-		DZA65_RS12710	0.10	-0.6
2,719,578	-		DZA65_RS12710	0.10	+0.8
2,719,578	-		DZA65_RS12710	0.10	-2.1
2,719,578	-		DZA65_RS12710	0.10	+0.5
2,719,579	+		DZA65_RS12710	0.10	+0.2
2,719,579	+		DZA65_RS12710	0.10	-1.1
2,719,579	+		DZA65_RS12710	0.10	+0.3
2,719,579	+		DZA65_RS12710	0.10	-0.2
2,719,579	+		DZA65_RS12710	0.10	-1.3
2,719,579	+		DZA65_RS12710	0.10	-1.9
2,719,579	+		DZA65_RS12710	0.10	-1.1
2,719,579	+		DZA65_RS12710	0.10	-0.7
2,719,580	-		DZA65_RS12710	0.10	-0.0
2,719,580	-		DZA65_RS12710	0.10	-1.5
2,719,580	-		DZA65_RS12710	0.10	+0.8
2,719,580	-		DZA65_RS12710	0.10	-0.2
2,719,580	-		DZA65_RS12710	0.10	+0.4
2,719,580	-		DZA65_RS12710	0.10	-1.0
2,719,580	-		DZA65_RS12710	0.10	-0.2
2,719,580	-		DZA65_RS12710	0.10	-0.3
2,719,580	-		DZA65_RS12710	0.10	-0.4
2,719,580	-		DZA65_RS12710	0.10	+1.0
2,719,584	+		DZA65_RS12710	0.11	-0.7
2,719,584	+				+2.1
2,719,584	+		DZA65_RS12710	0.11	-1.1
2,719,585	-		DZA65_RS12710	0.11	+0.6
2,719,701	+		DZA65_RS12710	0.28	-0.6
2,719,738	+		DZA65_RS12710	0.33	-0.2
2,719,738	+		DZA65_RS12710	0.33	-0.7
2,719,808	-		DZA65_RS12710	0.44	-0.1
2,719,808	-		DZA65_RS12710	0.44	-0.5
2,720,115	+		DZA65_RS12710	0.88	-0.5
2,720,115	+		DZA65_RS12710	0.88	-1.3
2,720,115	+		DZA65_RS12710	0.88	+0.7
2,720,115	+		DZA65_RS12710	0.88	-0.5
2,720,115	+		DZA65_RS12710	0.88	-0.6
2,720,116	-		DZA65_RS12710	0.88	+0.0
2,720,116	-		DZA65_RS12710	0.88	+1.1
2,720,116	-		DZA65_RS12710	0.88	-1.2
2,720,116	-		DZA65_RS12710	0.88	+0.9
2,720,116	-		DZA65_RS12710	0.88	-0.2
2,720,199	-				+0.1
2,720,199	-				-1.3
2,720,199	-				-0.7
2,720,254	+				-2.4
2,720,254	+				+0.3
2,720,254	+				-0.2
2,720,254	+				+0.1
2,720,254	+				+1.1
2,720,254	+				-0.9
2,720,254	+				+0.1
2,720,254	+				-2.6
2,720,255	-				-0.3
2,720,255	-				+0.8
2,720,255	-				-1.0
2,720,255	-				-0.7
2,720,280	+				-2.1
2,720,280	+				-0.2
2,720,281	-				+0.4
2,720,287	+				-0.4
2,720,288	-				-0.3
2,720,288	-				+1.3
2,720,288	-				-0.3
2,720,392	+				-0.2
2,720,393	-				+0.1
2,720,393	-				+1.0
2,720,393	-				+0.7
2,720,435	+				-0.3
2,720,435	+				-0.0
2,720,435	+				+0.8
2,720,435	+				-1.6
2,720,435	+				+0.7
2,720,435	+				+0.5
2,720,436	-				-2.2
2,720,436	-				+0.5
2,720,436	-				-0.1
2,720,518	+		DZA65_RS12715	0.11	+0.1
2,720,518	+		DZA65_RS12715	0.11	-0.1
2,720,518	+		DZA65_RS12715	0.11	-1.3
2,720,519	-		DZA65_RS12715	0.11	-2.9
2,720,519	-		DZA65_RS12715	0.11	-0.7
2,720,519	-		DZA65_RS12715	0.11	+1.6
2,720,519	-		DZA65_RS12715	0.11	+0.3
2,720,519	-		DZA65_RS12715	0.11	+0.1
2,720,615	+		DZA65_RS12715	0.17	+1.4
2,720,616	-		DZA65_RS12715	0.17	+0.3
2,720,616	-		DZA65_RS12715	0.17	+0.4
2,720,672	+		DZA65_RS12715	0.21	+0.0
2,720,672	+		DZA65_RS12715	0.21	-0.6
2,720,672	+		DZA65_RS12715	0.21	+0.3
2,720,672	+		DZA65_RS12715	0.21	-0.2
2,720,673	-		DZA65_RS12715	0.21	-0.3
2,720,673	-		DZA65_RS12715	0.21	+0.3
2,720,673	-		DZA65_RS12715	0.21	-0.8
2,720,674	+		DZA65_RS12715	0.21	+0.2
2,720,674	+		DZA65_RS12715	0.21	-0.6
2,720,674	+		DZA65_RS12715	0.21	+1.2
2,720,675	-		DZA65_RS12715	0.21	-1.3
2,720,675	-		DZA65_RS12715	0.21	+1.6
2,720,675	-		DZA65_RS12715	0.21	-0.3
2,720,675	-		DZA65_RS12715	0.21	-0.5
2,720,675	-		DZA65_RS12715	0.21	-0.6
2,720,675	-		DZA65_RS12715	0.21	-1.2
2,720,675	-		DZA65_RS12715	0.21	-1.7
2,720,675	-		DZA65_RS12715	0.21	+1.0
2,720,689	+		DZA65_RS12715	0.22	-1.1
2,720,690	-		DZA65_RS12715	0.22	-1.3
2,720,690	-		DZA65_RS12715	0.22	+0.6
2,720,690	-		DZA65_RS12715	0.22	+1.3
2,720,694	-		DZA65_RS12715	0.22	-0.2
2,720,818	+		DZA65_RS12715	0.30	-1.1
2,720,818	+		DZA65_RS12715	0.30	-0.7
2,720,819	-		DZA65_RS12715	0.30	-1.6
2,720,846	+		DZA65_RS12715	0.31	-0.2
2,720,883	+		DZA65_RS12715	0.34	-0.1
2,720,883	+		DZA65_RS12715	0.34	-0.9
2,720,883	+		DZA65_RS12715	0.34	+0.3
2,720,884	-		DZA65_RS12715	0.34	-0.2
2,720,884	-		DZA65_RS12715	0.34	+0.5
2,720,884	-		DZA65_RS12715	0.34	-2.1
2,720,884	-		DZA65_RS12715	0.34	-0.7
2,720,884	-		DZA65_RS12715	0.34	-0.2
2,721,010	+		DZA65_RS12715	0.42	+0.1
2,721,084	-		DZA65_RS12715	0.46	-3.3
2,721,084	-		DZA65_RS12715	0.46	-0.3
2,721,094	+		DZA65_RS12715	0.47	-1.0
2,721,095	-		DZA65_RS12715	0.47	-0.1
2,721,179	-		DZA65_RS12715	0.52	-0.2
2,721,179	-		DZA65_RS12715	0.52	-1.3