Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12485

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,671,445	+		DZA65_RS12480	0.60	-0.7
2,671,446	-		DZA65_RS12480	0.60	-0.6
2,671,588	+		DZA65_RS12480	0.71	-2.1
2,671,588	+		DZA65_RS12480	0.71	+1.0
2,671,720	-		DZA65_RS12480	0.80	+0.4
2,671,768	+		DZA65_RS12480	0.84	-0.5
2,671,768	+		DZA65_RS12480	0.84	-0.5
2,671,768	+		DZA65_RS12480	0.84	+0.3
2,671,769	-		DZA65_RS12480	0.84	+0.3
2,671,769	-		DZA65_RS12480	0.84	-0.0
2,671,769	-		DZA65_RS12480	0.84	-1.9
2,671,804	+		DZA65_RS12480	0.86	-0.7
2,671,805	-		DZA65_RS12480	0.86	+1.4
2,671,952	-				-0.3
2,671,996	+				+0.3
2,671,996	+				-2.1
2,671,997	-				-0.9
2,671,997	-				+0.3
2,671,997	-				+0.3
2,672,019	+				-1.3
2,672,020	-				-0.9
2,672,043	+				+1.3
2,672,043	+				-0.0
2,672,043	+				-0.5
2,672,043	+				+1.9
2,672,043	+				+0.7
2,672,043	+				+0.6
2,672,043	+				-0.7
2,672,044	-				-0.6
2,672,044	-				+0.0
2,672,044	-				+0.7
2,672,044	-				+0.3
2,672,072	+				+0.8
2,672,072	+				+0.7
2,672,072	+				-0.7
2,672,073	-				-0.1
2,672,127	+				+0.5
2,672,127	+				+0.0
2,672,127	+				-0.7
2,672,132	-				-0.4
2,672,132	-				+1.6
2,672,171	+				-0.5
2,672,172	-				-0.7
2,672,198	+				-0.2
2,672,198	+				+0.3
2,672,325	+				-0.1
2,672,325	+				-0.3
2,672,326	-				+0.7
2,672,347	+				+1.4
2,672,347	+				+1.7
2,672,350	+				-1.6
2,672,350	+				+0.6
2,672,350	+				+0.7
2,672,350	+				+1.1
2,672,350	+				+1.8
2,672,351	-				-1.6
2,672,351	-				+0.7
2,672,351	-				+0.5
2,672,351	-				-1.5
2,672,351	-				+0.3
2,672,351	-				-2.7
2,672,364	+				+0.6
2,672,365	-				+0.6
2,672,366	+				-0.3
2,672,366	+				+1.4
2,672,366	+				+0.8
2,672,366	+				-1.3
2,672,367	-				-0.7
2,672,374	-				+1.3
2,672,589	-				-0.1
2,672,633	+		DZA65_RS12485	0.12	+1.3
2,672,633	+		DZA65_RS12485	0.12	-1.1
2,672,633	+		DZA65_RS12485	0.12	+1.3
2,672,729	+		DZA65_RS12485	0.17	+0.3
2,672,746	+		DZA65_RS12485	0.18	-0.2
2,672,746	+		DZA65_RS12485	0.18	+0.3
2,672,747	-		DZA65_RS12485	0.18	+0.2
2,672,747	-		DZA65_RS12485	0.18	+1.4
2,672,862	+		DZA65_RS12485	0.25	-0.0
2,672,893	+		DZA65_RS12485	0.26	+1.4
2,672,934	-		DZA65_RS12485	0.29	-0.1
2,672,965	+		DZA65_RS12485	0.30	-0.0
2,673,070	+		DZA65_RS12485	0.36	-0.2
2,673,070	+		DZA65_RS12485	0.36	+0.7
2,673,070	+		DZA65_RS12485	0.36	+1.0
2,673,070	+				-0.3
2,673,070	+		DZA65_RS12485	0.36	+1.3
2,673,070	+		DZA65_RS12485	0.36	-0.3
2,673,071	-		DZA65_RS12485	0.36	+1.0
2,673,071	-		DZA65_RS12485	0.36	-1.0
2,673,071	-		DZA65_RS12485	0.36	-1.5
2,673,071	-		DZA65_RS12485	0.36	-1.6
2,673,071	-		DZA65_RS12485	0.36	-1.5
2,673,071	-		DZA65_RS12485	0.36	+0.4
2,673,071	-		DZA65_RS12485	0.36	+1.2
2,673,085	-		DZA65_RS12485	0.37	+0.7
2,673,085	-		DZA65_RS12485	0.37	+0.4
2,673,154	+		DZA65_RS12485	0.41	+0.5
2,673,154	+		DZA65_RS12485	0.41	+0.5
2,673,231	+		DZA65_RS12485	0.45	+1.7
2,673,231	+		DZA65_RS12485	0.45	-0.4
2,673,232	-		DZA65_RS12485	0.45	-1.2
2,673,232	-		DZA65_RS12485	0.45	-0.6
2,673,232	-		DZA65_RS12485	0.45	-0.1
2,673,232	-		DZA65_RS12485	0.45	-2.6
2,673,232	-		DZA65_RS12485	0.45	+1.6
2,673,274	-		DZA65_RS12485	0.47	-0.2
2,673,282	-		DZA65_RS12485	0.48	+0.3
2,673,282	-		DZA65_RS12485	0.48	-0.7
2,673,282	-		DZA65_RS12485	0.48	+0.7
2,673,289	+		DZA65_RS12485	0.48	-1.9
2,673,290	-		DZA65_RS12485	0.48	+0.3
2,673,290	-		DZA65_RS12485	0.48	+0.6
2,673,290	-		DZA65_RS12485	0.48	-1.3
2,673,417	+		DZA65_RS12485	0.55	-0.2
2,673,417	+		DZA65_RS12485	0.55	+0.8
2,673,417	+		DZA65_RS12485	0.55	+0.3
2,673,418	-		DZA65_RS12485	0.55	-1.2
2,673,517	+		DZA65_RS12485	0.61	-0.7
2,673,517	+		DZA65_RS12485	0.61	-1.2
2,673,518	-		DZA65_RS12485	0.61	-0.0
2,673,518	-		DZA65_RS12485	0.61	-0.4
2,673,518	-		DZA65_RS12485	0.61	+0.3
2,673,518	-		DZA65_RS12485	0.61	+0.7
2,673,518	-		DZA65_RS12485	0.61	-0.2
2,673,518	-		DZA65_RS12485	0.61	-0.4
2,673,604	+		DZA65_RS12485	0.66	-0.5
2,673,605	-		DZA65_RS12485	0.66	-1.5
2,673,605	-		DZA65_RS12485	0.66	-3.2
2,673,605	-		DZA65_RS12485	0.66	+0.0
2,673,605	-		DZA65_RS12485	0.66	+1.5
2,673,605	-		DZA65_RS12485	0.66	+0.1
2,673,605	-		DZA65_RS12485	0.66	+0.3
2,673,708	+		DZA65_RS12485	0.71	+0.4
2,673,709	-		DZA65_RS12485	0.71	+0.9
2,673,709	-		DZA65_RS12485	0.71	-1.9
2,673,861	-		DZA65_RS12485	0.80	-0.7
2,673,879	-		DZA65_RS12485	0.81	-0.3
2,673,879	-		DZA65_RS12485	0.81	+0.9
2,673,886	-		DZA65_RS12485	0.81	+0.6
2,673,886	-		DZA65_RS12485	0.81	-0.3
2,673,886	-		DZA65_RS12485	0.81	-1.3
2,673,955	+		DZA65_RS12485	0.85	+0.1
2,673,959	+		DZA65_RS12485	0.85	-1.7
2,673,959	+		DZA65_RS12485	0.85	+0.9
2,673,960	-		DZA65_RS12485	0.85	+2.3
2,673,960	-		DZA65_RS12485	0.85	-0.7
2,673,960	-		DZA65_RS12485	0.85	-0.6
2,673,988	+				-1.7
2,673,988	+		DZA65_RS12485	0.87	-1.2
2,673,988	+		DZA65_RS12485	0.87	+1.0
2,673,989	-		DZA65_RS12485	0.87	-1.6
2,673,989	-		DZA65_RS12485	0.87	+0.3
2,674,015	+		DZA65_RS12485	0.88	+0.9
2,674,080	-				+1.7
2,674,129	+				-0.9
2,674,129	+				+0.8
2,674,129	+				+0.6
2,674,130	-				+0.6
2,674,130	-				+0.1
2,674,188	-				+1.7
2,674,188	-				+1.1
2,674,295	+		DZA65_RS12490	0.11	-1.2
2,674,295	+		DZA65_RS12490	0.11	+1.7
2,674,295	+		DZA65_RS12490	0.11	-0.1
2,674,295	+		DZA65_RS12490	0.11	-1.2
2,674,296	-		DZA65_RS12490	0.12	-0.7
2,674,296	-		DZA65_RS12490	0.12	-1.7
2,674,296	-		DZA65_RS12490	0.12	-0.7
2,674,296	-		DZA65_RS12490	0.12	+1.0
2,674,318	+		DZA65_RS12490	0.15	+0.6
2,674,514	+		DZA65_RS12490	0.45	+0.5
2,674,515	-		DZA65_RS12490	0.45	+1.3
2,674,533	+		DZA65_RS12490	0.48	+0.3
2,674,533	+		DZA65_RS12490	0.48	-0.1
2,674,714	+		DZA65_RS12490	0.76	-0.3
2,674,714	+		DZA65_RS12490	0.76	+0.3
2,674,714	+		DZA65_RS12490	0.76	+1.6
2,674,714	+		DZA65_RS12490	0.76	+2.3
2,674,715	-		DZA65_RS12490	0.76	-0.2
2,674,715	-		DZA65_RS12490	0.76	+1.1
2,674,715	-		DZA65_RS12490	0.76	+0.6
2,674,715	-		DZA65_RS12490	0.76	+0.7
2,674,715	-		DZA65_RS12490	0.76	-1.4
2,674,715	-		DZA65_RS12490	0.76	-0.3
2,674,715	-		DZA65_RS12490	0.76	+0.1
2,674,715	-		DZA65_RS12490	0.76	+0.7
2,674,941	-				-0.3
2,674,970	+				-0.6
2,674,988	+				-0.7
2,674,989	-				-1.5
2,674,989	-				-1.2
2,674,990	+				-1.1
2,674,990	+				-0.0
2,674,990	+				+0.8
2,674,991	-				-0.5
2,675,019	+				-0.6
2,675,027	-				+0.1
2,675,039	+				-0.2
2,675,043	-				-0.1
2,675,061	+				-0.6
2,675,065	+				+0.1
2,675,065	+				-0.2
2,675,065	+				+0.9
2,675,065	+				+0.6
2,675,066	-				-0.7
2,675,066	-				-1.6
2,675,168	+				-1.4
2,675,169	-				+0.5
2,675,169	-				-1.0
2,675,205	+				+0.3
2,675,205	+				-1.7
2,675,205	+				+1.1
2,675,205	+				+0.4
2,675,205	+				+0.0
2,675,205	+				+0.5
2,675,205	+				+1.7
2,675,205	+				-0.2
2,675,205	+				+2.4
2,675,206	-				-3.1
2,675,206	-				-0.6
2,675,206	-				+0.8
2,675,206	-				-0.9
2,675,206	-				+1.1
2,675,206	-				+1.3
2,675,206	-				+1.3
2,675,206	-				-0.4
2,675,206	-				-0.1
2,675,206	-				-0.9
2,675,206	-				-1.9
2,675,217	+				-0.7
2,675,217	+				-1.0
2,675,217	+				+0.1
2,675,217	+				+0.8
2,675,218	-				-2.1
2,675,218	-				+1.3
2,675,227	+				+1.1
2,675,227	+				-0.3
2,675,227	+				-0.0
2,675,227	+				-0.0
2,675,227	+				-1.7
2,675,227	+				-1.4
2,675,227	+				-0.1
2,675,227	+				+2.1
2,675,227	+				-0.1
2,675,227	+				-0.1
2,675,227	+				-0.1
2,675,227	+				-2.1
2,675,227	+				-0.4
2,675,227	+				+1.0
2,675,227	+				-1.4
2,675,228	-				+0.3
2,675,228	-				-0.2
2,675,228	-				-1.6
2,675,228	-				-0.7
2,675,228	-				+0.0
2,675,228	-				+1.2
2,675,228	-				-0.7
2,675,228	-				-1.2
2,675,228	-				-2.2
2,675,228	-				+1.6