Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11565

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,469,513	+				+1.1
2,469,513	+				-0.1
2,469,556	-				-0.5
2,469,586	+				-1.0
2,469,590	-				-0.2
2,469,611	-				-0.4
2,469,624	+				-1.1
2,469,624	+				-1.8
2,469,624	+				+0.6
2,469,625	-				+0.5
2,469,633	+				-1.0
2,469,634	-				+0.2
2,469,634	-				+0.4
2,469,634	-				+2.2
2,469,634	-				-0.8
2,469,638	+				-1.1
2,469,639	-				+0.2
2,469,639	-				-0.1
2,469,666	-				-1.4
2,469,680	+				-1.4
2,469,680	+				+0.9
2,469,710	+				-0.4
2,469,710	+				+0.2
2,469,755	+				-1.4
2,469,760	+				-0.6
2,469,760	+				-2.7
2,469,761	-				-0.5
2,469,765	+				+0.8
2,469,766	-				-1.4
2,469,854	-		DZA65_RS11555	0.33	+0.2
2,469,869	+		DZA65_RS11555	0.41	+0.4
2,469,870	-		DZA65_RS11555	0.42	+0.2
2,469,872	+		DZA65_RS11555	0.43	-0.4
2,469,879	-		DZA65_RS11555	0.47	+0.6
2,469,942	-		DZA65_RS11555	0.82	-0.2
2,469,942	-		DZA65_RS11555	0.82	-1.0
2,469,970	+				-0.2
2,469,970	+				-1.9
2,469,970	+				-0.8
2,469,970	+				-1.8
2,469,971	-				+0.0
2,469,971	-				+0.4
2,469,971	-				+0.2
2,470,042	+		DZA65_RS11560	0.32	-0.6
2,470,042	+		DZA65_RS11560	0.32	-0.1
2,470,042	+		DZA65_RS11560	0.32	-0.4
2,470,043	-		DZA65_RS11560	0.33	-1.1
2,470,043	-		DZA65_RS11560	0.33	-0.6
2,470,043	-		DZA65_RS11560	0.33	+0.6
2,470,043	-		DZA65_RS11560	0.33	-0.8
2,470,043	-		DZA65_RS11560	0.33	+0.1
2,470,061	+		DZA65_RS11560	0.44	+0.4
2,470,062	-		DZA65_RS11560	0.45	+0.9
2,470,062	-		DZA65_RS11560	0.45	+0.6
2,470,064	+		DZA65_RS11560	0.46	-0.9
2,470,106	+		DZA65_RS11560	0.74	-0.5
2,470,106	+		DZA65_RS11560	0.74	-2.0
2,470,106	+		DZA65_RS11560	0.74	-1.4
2,470,106	+		DZA65_RS11560	0.74	+1.0
2,470,106	+		DZA65_RS11560	0.74	+0.0
2,470,106	+		DZA65_RS11560	0.74	-0.4
2,470,107	-		DZA65_RS11560	0.75	+0.3
2,470,107	-		DZA65_RS11560	0.75	+0.2
2,470,107	-		DZA65_RS11560	0.75	-2.8
2,470,107	-		DZA65_RS11560	0.75	-0.1
2,470,112	+				+1.8
2,470,112	+		DZA65_RS11560	0.78	-1.4
2,470,113	-		DZA65_RS11560	0.78	-0.0
2,470,114	+		DZA65_RS11560	0.79	-0.2
2,470,114	+		DZA65_RS11560	0.79	+0.0
2,470,114	+		DZA65_RS11560	0.79	-0.5
2,470,114	+		DZA65_RS11560	0.79	-1.1
2,470,115	-		DZA65_RS11560	0.80	-0.2
2,470,147	+				-0.2
2,470,148	-				-0.4
2,470,168	+				-1.7
2,470,169	-				-0.2
2,470,177	+				+1.5
2,470,177	+				+1.5
2,470,178	-				-0.8
2,470,179	+				+0.1
2,470,179	+				+1.3
2,470,180	-				-0.4
2,470,180	-				+0.1
2,470,182	+				+0.0
2,470,182	+				+0.5
2,470,183	-				-1.4
2,470,220	+				-0.2
2,470,245	-				+0.3
2,470,245	-				+0.2
2,470,275	-				+0.0
2,470,373	+				+1.5
2,470,385	+				+0.6
2,470,385	+				+0.7
2,470,386	-				+1.1
2,470,388	+				+0.6
2,470,388	+				+1.0
2,470,389	-				-0.3
2,470,397	+				+0.5
2,470,397	+				-1.8
2,470,398	-				+1.2
2,470,407	+				-1.4
2,470,408	-				-1.5
2,470,408	-				-0.4
2,470,519	-		DZA65_RS11565	0.20	-1.4
2,470,549	+		DZA65_RS11565	0.25	-1.1
2,470,549	+		DZA65_RS11565	0.25	+0.4
2,470,550	-		DZA65_RS11565	0.26	-2.4
2,470,648	+		DZA65_RS11565	0.44	-2.4
2,470,830	+		DZA65_RS11565	0.78	-0.7
2,470,856	+		DZA65_RS11565	0.83	-0.7
2,470,870	+		DZA65_RS11565	0.86	-0.9
2,470,871	-		DZA65_RS11565	0.86	-1.1
2,470,871	-		DZA65_RS11565	0.86	-0.1
2,470,984	+				+0.2
2,470,984	+				-2.6
2,470,985	-				+0.6
2,471,015	-				+1.1
2,471,051	+				-0.3
2,471,074	+				-1.8
2,471,074	+				-1.1
2,471,075	-				+0.1
2,471,081	+				+1.8
2,471,093	+				-0.0
2,471,094	-				+0.2
2,471,099	-				-0.2
2,471,111	-				-0.5
2,471,164	+		DZA65_RS11570	0.10	-0.0
2,471,164	+		DZA65_RS11570	0.10	-1.2
2,471,164	+		DZA65_RS11570	0.10	-0.0
2,471,230	-		DZA65_RS11570	0.25	+0.8
2,471,278	+		DZA65_RS11570	0.36	-1.5
2,471,279	-		DZA65_RS11570	0.36	-0.0
2,471,338	+		DZA65_RS11570	0.49	-0.2
2,471,360	+		DZA65_RS11570	0.54	-0.1
2,471,360	+		DZA65_RS11570	0.54	-0.6
2,471,378	+		DZA65_RS11570	0.58	-1.1
2,471,378	+		DZA65_RS11570	0.58	+0.5
2,471,378	+		DZA65_RS11570	0.58	+0.6
2,471,378	+		DZA65_RS11570	0.58	-0.7
2,471,378	+		DZA65_RS11570	0.58	-0.1
2,471,378	+		DZA65_RS11570	0.58	+0.2
2,471,378	+		DZA65_RS11570	0.58	-0.4
2,471,378	+		DZA65_RS11570	0.58	+0.1
2,471,378	+		DZA65_RS11570	0.58	+0.2
2,471,378	+		DZA65_RS11570	0.58	+0.2
2,471,379	-		DZA65_RS11570	0.58	-1.1
2,471,379	-		DZA65_RS11570	0.58	-0.3
2,471,379	-		DZA65_RS11570	0.58	+0.1
2,471,379	-		DZA65_RS11570	0.58	-0.5
2,471,382	+		DZA65_RS11570	0.59	-0.5
2,471,382	+		DZA65_RS11570	0.59	-0.4
2,471,383	-		DZA65_RS11570	0.59	-0.4
2,471,383	-		DZA65_RS11570	0.59	-0.0
2,471,416	-				-0.4
2,471,416	-		DZA65_RS11570	0.66	+0.1
2,471,416	-		DZA65_RS11570	0.66	-0.1
2,471,416	-		DZA65_RS11570	0.66	+0.2
2,471,430	+		DZA65_RS11570	0.70	+0.4
2,471,430	+		DZA65_RS11570	0.70	+1.4
2,471,431	-		DZA65_RS11570	0.70	+1.6
2,471,435	+		DZA65_RS11570	0.71	-2.8
2,471,435	+		DZA65_RS11570	0.71	-1.4
2,471,436	-		DZA65_RS11570	0.71	+1.2
2,471,565	+				+0.8
2,471,565	+				+0.1
2,471,566	-				-0.3
2,471,566	-				+1.3
2,471,566	-				-0.2
2,471,584	-				-1.7
2,471,586	+				-1.0
2,471,586	+				+1.2
2,471,587	-				+0.1
2,471,607	+				+0.4
2,471,607	+				+0.1
2,471,608	-				-1.8
2,471,608	-				+0.5
2,471,612	+				+1.0
2,471,612	+				-0.5
2,471,613	-				+0.2
2,471,613	-				-0.5
2,471,667	+				-1.5
2,471,667	+				-0.8
2,471,667	+				+1.2
2,471,667	+				-0.1
2,471,668	-				-0.1
2,471,708	+				+0.6
2,471,806	+		DZA65_RS11575	0.21	-1.0
2,471,806	+		DZA65_RS11575	0.21	-0.5
2,471,806	+		DZA65_RS11575	0.21	-1.2
2,471,806	+		DZA65_RS11575	0.21	-0.3
2,471,807	-		DZA65_RS11575	0.21	-0.7
2,471,807	-		DZA65_RS11575	0.21	+0.3
2,471,807	-		DZA65_RS11575	0.21	+1.1
2,471,807	-		DZA65_RS11575	0.21	+1.0
2,471,909	+		DZA65_RS11575	0.36	+0.1