Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11070

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,342,586	-		DZA65_RS11065	0.42	+1.5
2,342,591	+		DZA65_RS11065	0.42	+0.3
2,342,617	-		DZA65_RS11065	0.44	+0.5
2,342,639	-		DZA65_RS11065	0.45	+0.2
2,342,648	-		DZA65_RS11065	0.46	+1.9
2,342,754	+		DZA65_RS11065	0.53	+0.3
2,342,754	+		DZA65_RS11065	0.53	+0.0
2,342,754	+		DZA65_RS11065	0.53	-0.6
2,342,755	-		DZA65_RS11065	0.53	+0.8
2,342,766	+		DZA65_RS11065	0.54	-1.8
2,342,766	+		DZA65_RS11065	0.54	-1.9
2,342,767	-		DZA65_RS11065	0.54	+0.8
2,342,786	+		DZA65_RS11065	0.55	+0.4
2,342,786	+		DZA65_RS11065	0.55	+0.3
2,343,023	+		DZA65_RS11065	0.71	+0.1
2,343,024	-		DZA65_RS11065	0.71	-1.2
2,343,104	-		DZA65_RS11065	0.76	-0.4
2,343,220	+		DZA65_RS11065	0.84	+1.5
2,343,220	+		DZA65_RS11065	0.84	-1.0
2,343,220	+		DZA65_RS11065	0.84	-0.0
2,343,221	-		DZA65_RS11065	0.84	+0.3
2,343,221	-		DZA65_RS11065	0.84	-1.4
2,343,221	-		DZA65_RS11065	0.84	-0.7
2,343,221	-		DZA65_RS11065	0.84	-0.8
2,343,221	-		DZA65_RS11065	0.84	-1.6
2,343,221	-		DZA65_RS11065	0.84	-1.2
2,343,251	-		DZA65_RS11065	0.86	+0.2
2,343,258	+		DZA65_RS11065	0.86	+0.2
2,343,259	-		DZA65_RS11065	0.86	-0.9
2,343,408	+				-0.8
2,343,409	-				-0.6
2,343,452	-				-1.5
2,343,495	+				-0.8
2,343,495	+				+0.8
2,343,495	+				-0.2
2,343,495	+				+0.2
2,343,496	-				-0.8
2,343,496	-				-0.0
2,343,496	-				-1.4
2,343,496	-				+0.7
2,343,496	-				-1.0
2,343,496	-				-2.4
2,343,562	-				-1.1
2,343,603	+				+1.1
2,343,603	+				+0.2
2,343,604	-				-0.8
2,343,604	-				-0.4
2,343,604	-				+1.5
2,343,701	+		DZA65_RS11070	0.11	+1.1
2,343,701	+		DZA65_RS11070	0.11	-0.0
2,343,702	-		DZA65_RS11070	0.11	+0.4
2,343,794	-		DZA65_RS11070	0.16	+0.2
2,344,185	+		DZA65_RS11070	0.39	+0.9
2,344,185	+		DZA65_RS11070	0.39	+0.4
2,344,185	+		DZA65_RS11070	0.39	-1.8
2,344,185	+		DZA65_RS11070	0.39	+0.0
2,344,185	+		DZA65_RS11070	0.39	+0.2
2,344,185	+				+2.2
2,344,185	+		DZA65_RS11070	0.39	-0.9
2,344,185	+		DZA65_RS11070	0.39	+0.7
2,344,185	+		DZA65_RS11070	0.39	+0.6
2,344,185	+		DZA65_RS11070	0.39	-0.3
2,344,185	+		DZA65_RS11070	0.39	+0.5
2,344,185	+		DZA65_RS11070	0.39	+0.0
2,344,186	-		DZA65_RS11070	0.39	-0.2
2,344,186	-				+2.5
2,344,186	-		DZA65_RS11070	0.39	+0.2
2,344,186	-		DZA65_RS11070	0.39	+0.5
2,344,186	-		DZA65_RS11070	0.39	-0.4
2,344,186	-		DZA65_RS11070	0.39	-1.0
2,344,186	-		DZA65_RS11070	0.39	+0.9
2,344,226	-		DZA65_RS11070	0.42	+1.6
2,344,227	+		DZA65_RS11070	0.42	+1.1
2,344,227	+		DZA65_RS11070	0.42	+0.4
2,344,348	+				-0.4
2,344,348	+		DZA65_RS11070	0.49	-0.0
2,344,348	+		DZA65_RS11070	0.49	+0.6
2,344,348	+		DZA65_RS11070	0.49	-1.4
2,344,348	+		DZA65_RS11070	0.49	-1.1
2,344,348	+		DZA65_RS11070	0.49	-0.0
2,344,349	-		DZA65_RS11070	0.49	+1.1
2,344,349	-		DZA65_RS11070	0.49	+0.2
2,344,349	-		DZA65_RS11070	0.49	+1.7
2,344,349	-		DZA65_RS11070	0.49	-1.7
2,344,349	-		DZA65_RS11070	0.49	-0.8
2,344,349	-		DZA65_RS11070	0.49	-0.4
2,344,350	+		DZA65_RS11070	0.49	-1.0
2,344,350	+		DZA65_RS11070	0.49	+2.1
2,344,350	+		DZA65_RS11070	0.49	+0.2
2,344,350	+		DZA65_RS11070	0.49	+1.0
2,344,350	+		DZA65_RS11070	0.49	-0.9
2,344,351	-		DZA65_RS11070	0.49	+0.2
2,344,351	-		DZA65_RS11070	0.49	+0.6
2,344,351	-		DZA65_RS11070	0.49	-0.8
2,344,758	+		DZA65_RS11070	0.73	+0.2
2,344,758	+		DZA65_RS11070	0.73	+1.0
2,344,758	+		DZA65_RS11070	0.73	+2.8
2,344,758	+		DZA65_RS11070	0.73	-0.9
2,344,759	-		DZA65_RS11070	0.73	-0.8
2,344,782	+		DZA65_RS11070	0.74	+0.2
2,344,783	-		DZA65_RS11070	0.74	-0.6
2,344,783	-		DZA65_RS11070	0.74	-0.5
2,344,925	+		DZA65_RS11070	0.83	-1.8
2,344,925	+		DZA65_RS11070	0.83	-0.1
2,344,925	+		DZA65_RS11070	0.83	+1.2
2,344,925	+		DZA65_RS11070	0.83	+0.5
2,344,925	+		DZA65_RS11070	0.83	+0.4
2,344,925	+		DZA65_RS11070	0.83	+0.7
2,344,925	+		DZA65_RS11070	0.83	-0.5
2,344,926	-		DZA65_RS11070	0.83	+1.5
2,344,926	-		DZA65_RS11070	0.83	-1.4
2,345,015	+		DZA65_RS11070	0.88	+1.0
2,345,040	+		DZA65_RS11070	0.89	-0.0
2,345,041	-		DZA65_RS11070	0.90	-0.5
2,345,041	-		DZA65_RS11070	0.90	-3.0
2,345,041	-		DZA65_RS11070	0.90	-0.8
2,345,041	-		DZA65_RS11070	0.90	-1.8
2,345,085	+				-1.4
2,345,085	+				+0.7
2,345,085	+				-1.5
2,345,085	+				-1.0
2,345,085	+				-2.2
2,345,085	+				-1.5
2,345,086	-				+0.2
2,345,086	-				+0.2
2,345,109	+				+0.7
2,345,113	-				+0.4
2,345,113	-				+0.7
2,345,113	-				+2.3
2,345,113	-				-0.2
2,345,200	+				-0.0
2,345,200	+				+0.8
2,345,201	-				+0.2
2,345,234	+				+0.1
2,345,234	+				-0.8
2,345,241	-				+0.6
2,345,256	+				-1.0
2,345,257	-				-0.4
2,345,257	-				-0.0
2,345,261	+				+2.2
2,345,304	+				+0.1
2,345,304	+				+0.9
2,345,304	+				+1.6
2,345,304	+				+0.4
2,345,305	-				+1.1
2,345,349	-				-0.1
2,345,384	-				+0.8
2,345,397	-				+0.8
2,345,413	-				-3.5
2,345,413	-				+0.5
2,345,451	+				+1.7
2,345,451	+				+0.6
2,345,470	-				-0.4
2,345,488	-				-0.8
2,345,541	-				+0.8
2,345,575	+				+1.1
2,345,581	+				+0.2
2,345,582	-				-0.3
2,345,582	-				+0.9
2,345,607	+				-0.9
2,345,607	+				+0.6
2,345,608	-				+0.8
2,345,608	-				-0.2
2,345,608	-				+0.5
2,345,649	+				+1.2
2,345,677	-				-0.5
2,345,862	+		DZA65_RS11075	0.26	+0.2
2,345,890	-		DZA65_RS11075	0.29	-0.6
2,345,894	+		DZA65_RS11075	0.30	-0.1
2,345,895	-		DZA65_RS11075	0.30	-0.1
2,345,895	-		DZA65_RS11075	0.30	+0.5
2,345,895	-		DZA65_RS11075	0.30	-0.1
2,345,895	-		DZA65_RS11075	0.30	-0.5
2,345,911	+		DZA65_RS11075	0.31	+0.5
2,345,911	+		DZA65_RS11075	0.31	+0.2
2,345,911	+		DZA65_RS11075	0.31	+0.1
2,345,911	+		DZA65_RS11075	0.31	-0.5
2,345,912	-		DZA65_RS11075	0.32	+0.0
2,345,912	-		DZA65_RS11075	0.32	-0.9
2,345,912	-		DZA65_RS11075	0.32	+0.7
2,346,124	-		DZA65_RS11075	0.53	+1.4
2,346,178	+		DZA65_RS11075	0.59	-0.0
2,346,178	+		DZA65_RS11075	0.59	+1.2
2,346,178	+		DZA65_RS11075	0.59	+1.2
2,346,178	+		DZA65_RS11075	0.59	-0.0
2,346,179	-		DZA65_RS11075	0.59	+0.8
2,346,179	-		DZA65_RS11075	0.59	-2.4
2,346,205	-		DZA65_RS11075	0.61	+1.0