Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11065

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,340,968	+		DZA65_RS11060	0.49	-0.5
2,340,968	+		DZA65_RS11060	0.49	+0.1
2,340,968	+		DZA65_RS11060	0.49	+0.4
2,340,968	+		DZA65_RS11060	0.49	+0.2
2,340,968	+		DZA65_RS11060	0.49	-2.1
2,340,969	-		DZA65_RS11060	0.49	-0.8
2,340,969	-		DZA65_RS11060	0.49	-0.6
2,340,969	-		DZA65_RS11060	0.49	+0.9
2,340,998	+		DZA65_RS11060	0.51	+0.6
2,340,999	-		DZA65_RS11060	0.51	+0.7
2,340,999	-		DZA65_RS11060	0.51	+0.3
2,340,999	-		DZA65_RS11060	0.51	-0.4
2,341,109	-		DZA65_RS11060	0.57	-1.2
2,341,164	+		DZA65_RS11060	0.60	-2.6
2,341,164	+		DZA65_RS11060	0.60	+1.3
2,341,165	-		DZA65_RS11060	0.61	+2.2
2,341,165	-		DZA65_RS11060	0.61	-0.4
2,341,165	-		DZA65_RS11060	0.61	+0.4
2,341,165	-		DZA65_RS11060	0.61	-0.1
2,341,165	-		DZA65_RS11060	0.61	+1.4
2,341,179	-		DZA65_RS11060	0.61	+1.3
2,341,244	+		DZA65_RS11060	0.65	+0.5
2,341,244	+		DZA65_RS11060	0.65	-1.2
2,341,245	-		DZA65_RS11060	0.65	+1.2
2,341,245	-		DZA65_RS11060	0.65	+0.5
2,341,245	-		DZA65_RS11060	0.65	+0.8
2,341,259	+		DZA65_RS11060	0.66	-1.1
2,341,259	+		DZA65_RS11060	0.66	-0.2
2,341,259	+		DZA65_RS11060	0.66	+0.2
2,341,260	-		DZA65_RS11060	0.66	+0.3
2,341,260	-		DZA65_RS11060	0.66	-0.8
2,341,260	-		DZA65_RS11060	0.66	+0.9
2,341,292	+		DZA65_RS11060	0.68	-0.5
2,341,311	+		DZA65_RS11060	0.69	-0.8
2,341,311	+		DZA65_RS11060	0.69	-0.5
2,341,322	-		DZA65_RS11060	0.70	+0.2
2,341,322	-		DZA65_RS11060	0.70	-0.8
2,341,381	+		DZA65_RS11060	0.73	-1.8
2,341,382	-		DZA65_RS11060	0.73	+0.4
2,341,430	+		DZA65_RS11060	0.76	+0.2
2,341,450	-		DZA65_RS11060	0.77	+0.2
2,341,450	-		DZA65_RS11060	0.77	+0.5
2,341,450	-		DZA65_RS11060	0.77	-1.8
2,341,466	+				-0.4
2,341,466	+		DZA65_RS11060	0.78	-1.9
2,341,466	+		DZA65_RS11060	0.78	+0.8
2,341,466	+		DZA65_RS11060	0.78	+0.3
2,341,466	+		DZA65_RS11060	0.78	-1.8
2,341,466	+		DZA65_RS11060	0.78	-0.6
2,341,466	+		DZA65_RS11060	0.78	+0.2
2,341,466	+		DZA65_RS11060	0.78	+0.1
2,341,466	+		DZA65_RS11060	0.78	+0.0
2,341,466	+		DZA65_RS11060	0.78	-0.6
2,341,467	-		DZA65_RS11060	0.78	+0.8
2,341,467	-		DZA65_RS11060	0.78	+3.3
2,341,468	+		DZA65_RS11060	0.78	+1.0
2,341,468	+		DZA65_RS11060	0.78	+0.2
2,341,468	+		DZA65_RS11060	0.78	+0.2
2,341,469	-		DZA65_RS11060	0.78	+1.7
2,341,469	-		DZA65_RS11060	0.78	-1.7
2,341,505	+		DZA65_RS11060	0.80	+0.4
2,341,505	+		DZA65_RS11060	0.80	-1.9
2,341,506	-		DZA65_RS11060	0.80	-1.6
2,341,541	+		DZA65_RS11060	0.82	+0.7
2,341,541	+		DZA65_RS11060	0.82	-0.9
2,341,541	+		DZA65_RS11060	0.82	+1.7
2,341,541	+		DZA65_RS11060	0.82	-0.2
2,341,542	-		DZA65_RS11060	0.83	-0.3
2,341,625	-		DZA65_RS11060	0.87	-0.4
2,341,625	-		DZA65_RS11060	0.87	+0.9
2,341,698	-				-1.6
2,341,724	+				+0.2
2,341,725	-				+1.1
2,341,725	-				-1.5
2,341,725	-				-0.5
2,341,725	-				+0.5
2,341,730	+				-0.4
2,341,738	+				+0.2
2,341,738	+				-0.5
2,341,738	+				+0.2
2,341,739	-				-0.3
2,341,753	+				+0.3
2,341,753	+				-0.5
2,341,754	-				-2.6
2,341,754	-				-0.8
2,341,754	-				-0.8
2,341,754	-				-0.0
2,341,754	-				+0.2
2,341,754	-				+0.4
2,341,777	+				-0.3
2,341,777	+				-1.4
2,341,777	+				-1.5
2,341,777	+				-1.1
2,341,777	+				+0.0
2,341,777	+				+0.1
2,341,778	-				+0.3
2,341,778	-				+0.2
2,341,778	-				-0.8
2,341,778	-				+1.0
2,341,778	-				+0.2
2,341,778	-				-0.8
2,341,783	+				-0.8
2,341,783	+				-0.4
2,341,783	+				-0.5
2,341,814	+				-1.1
2,341,814	+				-0.7
2,341,814	+				-0.9
2,341,814	+				-0.8
2,341,815	-				-0.8
2,341,815	-				-0.8
2,341,815	-				-1.0
2,341,815	-				-1.8
2,341,815	-				+0.1
2,341,838	+				-1.0
2,341,838	+				-2.9
2,341,884	+				+0.7
2,341,898	-				-1.1
2,341,940	+				-1.0
2,341,940	+				-0.6
2,341,941	-				-0.2
2,341,941	-				-0.5
2,341,970	+				+1.9
2,341,970	+				-0.0
2,341,971	-				-0.2
2,341,971	-				+0.5
2,341,971	-				+0.2
2,341,977	+				-0.0
2,341,980	+				-0.7
2,341,981	-				-0.2
2,342,070	+				+0.6
2,342,070	+				-0.5
2,342,071	-				-0.6
2,342,071	-				-0.6
2,342,082	+				+0.5
2,342,083	-				-0.8
2,342,083	-				+0.3
2,342,083	-				-0.4
2,342,083	-				-0.5
2,342,113	+		DZA65_RS11065	0.11	+0.8
2,342,114	-		DZA65_RS11065	0.11	+1.6
2,342,114	-		DZA65_RS11065	0.11	+0.5
2,342,227	+		DZA65_RS11065	0.18	+0.0
2,342,228	-		DZA65_RS11065	0.18	+1.1
2,342,230	+		DZA65_RS11065	0.18	+0.9
2,342,355	+		DZA65_RS11065	0.27	-0.8
2,342,355	+		DZA65_RS11065	0.27	+0.6
2,342,355	+		DZA65_RS11065	0.27	+0.5
2,342,356	-		DZA65_RS11065	0.27	-0.8
2,342,413	+		DZA65_RS11065	0.30	+1.4
2,342,413	+		DZA65_RS11065	0.30	+1.8
2,342,414	-		DZA65_RS11065	0.31	-0.2
2,342,414	-		DZA65_RS11065	0.31	+1.1
2,342,454	+		DZA65_RS11065	0.33	+0.8
2,342,454	+		DZA65_RS11065	0.33	-2.4
2,342,455	-		DZA65_RS11065	0.33	+0.3
2,342,460	+		DZA65_RS11065	0.34	+0.8
2,342,460	+		DZA65_RS11065	0.34	+0.4
2,342,460	+		DZA65_RS11065	0.34	+1.4
2,342,460	+		DZA65_RS11065	0.34	-0.0
2,342,460	+		DZA65_RS11065	0.34	-2.1
2,342,460	+				+0.2
2,342,460	+		DZA65_RS11065	0.34	+0.2
2,342,460	+		DZA65_RS11065	0.34	+0.6
2,342,460	+		DZA65_RS11065	0.34	-0.5
2,342,461	-		DZA65_RS11065	0.34	-2.8
2,342,461	-		DZA65_RS11065	0.34	-0.6
2,342,586	-		DZA65_RS11065	0.42	+1.5
2,342,591	+		DZA65_RS11065	0.42	+0.3
2,342,617	-		DZA65_RS11065	0.44	+0.5
2,342,639	-		DZA65_RS11065	0.45	+0.2
2,342,648	-		DZA65_RS11065	0.46	+1.9
2,342,754	+		DZA65_RS11065	0.53	+0.3
2,342,754	+		DZA65_RS11065	0.53	+0.0
2,342,754	+		DZA65_RS11065	0.53	-0.6
2,342,755	-		DZA65_RS11065	0.53	+0.8
2,342,766	+		DZA65_RS11065	0.54	-1.8
2,342,766	+		DZA65_RS11065	0.54	-1.9
2,342,767	-		DZA65_RS11065	0.54	+0.8
2,342,786	+		DZA65_RS11065	0.55	+0.4
2,342,786	+		DZA65_RS11065	0.55	+0.3
2,343,023	+		DZA65_RS11065	0.71	+0.1
2,343,024	-		DZA65_RS11065	0.71	-1.2
2,343,104	-		DZA65_RS11065	0.76	-0.4
2,343,220	+		DZA65_RS11065	0.84	+1.5
2,343,220	+		DZA65_RS11065	0.84	-1.0
2,343,220	+		DZA65_RS11065	0.84	-0.0
2,343,221	-		DZA65_RS11065	0.84	+0.3
2,343,221	-		DZA65_RS11065	0.84	-1.4
2,343,221	-		DZA65_RS11065	0.84	-0.7
2,343,221	-		DZA65_RS11065	0.84	-0.8
2,343,221	-		DZA65_RS11065	0.84	-1.6
2,343,221	-		DZA65_RS11065	0.84	-1.2
2,343,251	-		DZA65_RS11065	0.86	+0.2
2,343,258	+		DZA65_RS11065	0.86	+0.2
2,343,259	-		DZA65_RS11065	0.86	-0.9
2,343,408	+				-0.8
2,343,409	-				-0.6
2,343,452	-				-1.5
2,343,495	+				-0.8
2,343,495	+				+0.8
2,343,495	+				-0.2
2,343,495	+				+0.2
2,343,496	-				-0.8
2,343,496	-				-0.0
2,343,496	-				-1.4
2,343,496	-				+0.7
2,343,496	-				-1.0
2,343,496	-				-2.4
2,343,562	-				-1.1
2,343,603	+				+1.1
2,343,603	+				+0.2
2,343,604	-				-0.8
2,343,604	-				-0.4
2,343,604	-				+1.5
2,343,701	+		DZA65_RS11070	0.11	+1.1
2,343,701	+		DZA65_RS11070	0.11	-0.0
2,343,702	-		DZA65_RS11070	0.11	+0.4
2,343,794	-		DZA65_RS11070	0.16	+0.2
2,344,185	+		DZA65_RS11070	0.39	+0.9
2,344,185	+		DZA65_RS11070	0.39	+0.4
2,344,185	+		DZA65_RS11070	0.39	-1.8
2,344,185	+		DZA65_RS11070	0.39	+0.0
2,344,185	+		DZA65_RS11070	0.39	+0.2
2,344,185	+				+2.2
2,344,185	+		DZA65_RS11070	0.39	-0.9
2,344,185	+		DZA65_RS11070	0.39	+0.7
2,344,185	+		DZA65_RS11070	0.39	+0.6
2,344,185	+		DZA65_RS11070	0.39	-0.3
2,344,185	+		DZA65_RS11070	0.39	+0.5
2,344,185	+		DZA65_RS11070	0.39	+0.0
2,344,186	-		DZA65_RS11070	0.39	-0.2
2,344,186	-				+2.5
2,344,186	-		DZA65_RS11070	0.39	+0.2
2,344,186	-		DZA65_RS11070	0.39	+0.5
2,344,186	-		DZA65_RS11070	0.39	-0.4
2,344,186	-		DZA65_RS11070	0.39	-1.0
2,344,186	-		DZA65_RS11070	0.39	+0.9
2,344,226	-		DZA65_RS11070	0.42	+1.6
2,344,227	+		DZA65_RS11070	0.42	+1.1
2,344,227	+		DZA65_RS11070	0.42	+0.4
2,344,348	+				-0.4
2,344,348	+		DZA65_RS11070	0.49	-0.0
2,344,348	+		DZA65_RS11070	0.49	+0.6
2,344,348	+		DZA65_RS11070	0.49	-1.4
2,344,348	+		DZA65_RS11070	0.49	-1.1
2,344,348	+		DZA65_RS11070	0.49	-0.0
2,344,349	-		DZA65_RS11070	0.49	+1.1
2,344,349	-		DZA65_RS11070	0.49	+0.2
2,344,349	-		DZA65_RS11070	0.49	+1.7
2,344,349	-		DZA65_RS11070	0.49	-1.7
2,344,349	-		DZA65_RS11070	0.49	-0.8
2,344,349	-		DZA65_RS11070	0.49	-0.4
2,344,350	+		DZA65_RS11070	0.49	-1.0
2,344,350	+		DZA65_RS11070	0.49	+2.1
2,344,350	+		DZA65_RS11070	0.49	+0.2
2,344,350	+		DZA65_RS11070	0.49	+1.0
2,344,350	+		DZA65_RS11070	0.49	-0.9
2,344,351	-		DZA65_RS11070	0.49	+0.2
2,344,351	-		DZA65_RS11070	0.49	+0.6
2,344,351	-		DZA65_RS11070	0.49	-0.8