Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10945

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,314,232	-				+0.4
2,314,232	-				+0.1
2,314,234	+				-0.2
2,314,234	+				+0.6
2,314,293	+				+0.2
2,314,293	+				+0.2
2,314,368	+				-2.1
2,314,369	-				-2.4
2,314,371	+				-1.4
2,314,372	-				+0.1
2,314,372	-				-1.4
2,314,372	-				-0.8
2,314,372	-				-2.0
2,314,372	-				-1.4
2,314,372	-				-3.1
2,314,372	-				-3.1
2,314,372	-				-1.2
2,314,578	+				-2.4
2,314,578	+		DZA65_RS10940	0.35	-2.1
2,314,578	+				+0.2
2,314,578	+		DZA65_RS10940	0.35	-2.6
2,314,579	-				-2.4
2,314,579	-		DZA65_RS10940	0.35	-1.8
2,314,579	-		DZA65_RS10940	0.35	-2.2
2,314,579	-		DZA65_RS10940	0.35	-3.6
2,314,579	-		DZA65_RS10940	0.35	-2.4
2,314,582	+		DZA65_RS10940	0.36	-3.2
2,314,582	+		DZA65_RS10940	0.36	-1.3
2,314,583	-		DZA65_RS10940	0.36	-0.8
2,314,583	-		DZA65_RS10940	0.36	-3.1
2,314,583	-		DZA65_RS10940	0.36	-1.8
2,314,583	-		DZA65_RS10940	0.36	-1.8
2,314,583	-		DZA65_RS10940	0.36	-3.0
2,314,583	-		DZA65_RS10940	0.36	-3.6
2,314,709	+		DZA65_RS10940	0.51	-3.7
2,314,759	-		DZA65_RS10940	0.58	-3.1
2,314,797	+		DZA65_RS10940	0.62	-3.0
2,314,797	+		DZA65_RS10940	0.62	-3.1
2,314,797	+		DZA65_RS10940	0.62	-2.9
2,314,797	+		DZA65_RS10940	0.62	-1.9
2,314,798	-		DZA65_RS10940	0.62	-3.1
2,314,798	-		DZA65_RS10940	0.62	-2.1
2,314,798	-		DZA65_RS10940	0.62	-3.0
2,314,827	+		DZA65_RS10940	0.66	+1.2
2,314,828	-		DZA65_RS10940	0.66	-3.6
2,314,993	+		DZA65_RS10940	0.87	-3.8
2,314,994	-				-0.4
2,314,994	-		DZA65_RS10940	0.87	-3.1
2,315,139	+				-0.8
2,315,324	+		DZA65_RS10945	0.19	-2.8
2,315,324	+		DZA65_RS10945	0.19	-1.8
2,315,324	+		DZA65_RS10945	0.19	-0.5
2,315,324	+		DZA65_RS10945	0.19	-1.2
2,315,324	+		DZA65_RS10945	0.19	-2.4
2,315,324	+		DZA65_RS10945	0.19	-1.4
2,315,325	-		DZA65_RS10945	0.19	-3.4
2,315,325	-		DZA65_RS10945	0.19	-1.4
2,315,325	-		DZA65_RS10945	0.19	-2.0
2,315,325	-		DZA65_RS10945	0.19	-3.6
2,315,325	-		DZA65_RS10945	0.19	-2.8
2,315,325	-		DZA65_RS10945	0.19	-0.2
2,315,325	-				-1.4
2,315,325	-		DZA65_RS10945	0.19	-0.8
2,315,397	+		DZA65_RS10945	0.25	-0.8
2,315,398	-		DZA65_RS10945	0.25	-3.4
2,315,402	+		DZA65_RS10945	0.25	-2.5
2,315,402	+		DZA65_RS10945	0.25	-1.1
2,315,402	+				-1.8
2,315,402	+		DZA65_RS10945	0.25	-2.4
2,315,403	-		DZA65_RS10945	0.25	-0.8
2,315,459	+		DZA65_RS10945	0.30	-2.1
2,315,459	+		DZA65_RS10945	0.30	-3.4
2,315,459	+				-0.4
2,315,459	+		DZA65_RS10945	0.30	-3.0
2,315,460	-		DZA65_RS10945	0.30	-0.9
2,315,460	-		DZA65_RS10945	0.30	-1.8
2,315,460	-		DZA65_RS10945	0.30	-3.5
2,315,460	-				-0.4
2,315,460	-		DZA65_RS10945	0.30	-2.1
2,315,460	-		DZA65_RS10945	0.30	-0.8
2,315,460	-		DZA65_RS10945	0.30	-1.0
2,315,460	-		DZA65_RS10945	0.30	-1.3
2,315,515	+		DZA65_RS10945	0.35	-2.0
2,315,515	+		DZA65_RS10945	0.35	-2.9
2,315,515	+		DZA65_RS10945	0.35	-1.8
2,315,516	-		DZA65_RS10945	0.35	-1.6
2,315,516	-				-1.8
2,315,738	+		DZA65_RS10945	0.53	-1.6
2,315,739	-		DZA65_RS10945	0.54	+0.2
2,315,753	+		DZA65_RS10945	0.55	-0.5
2,315,753	+		DZA65_RS10945	0.55	-2.6
2,315,754	-		DZA65_RS10945	0.55	-0.2
2,315,754	-		DZA65_RS10945	0.55	-3.0
2,315,754	-		DZA65_RS10945	0.55	-0.4
2,315,754	-		DZA65_RS10945	0.55	-2.5
2,315,897	+		DZA65_RS10945	0.67	-2.4
2,315,897	+		DZA65_RS10945	0.67	-2.5
2,315,897	+		DZA65_RS10945	0.67	-2.6
2,315,897	+		DZA65_RS10945	0.67	-4.5
2,315,897	+		DZA65_RS10945	0.67	-3.1
2,315,897	+		DZA65_RS10945	0.67	-1.4
2,315,897	+		DZA65_RS10945	0.67	-0.8
2,315,898	-		DZA65_RS10945	0.67	-2.0
2,315,898	-		DZA65_RS10945	0.67	-3.4
2,315,898	-		DZA65_RS10945	0.67	-1.4
2,316,023	-		DZA65_RS10945	0.77	-3.1
2,316,074	+		DZA65_RS10945	0.82	-1.2
2,316,074	+		DZA65_RS10945	0.82	-1.1
2,316,075	-		DZA65_RS10945	0.82	-2.1
2,316,075	-		DZA65_RS10945	0.82	-2.9
2,316,244	+				-2.4
2,316,244	+				-0.4
2,316,245	-				-0.4
2,316,248	+				-2.6
2,316,248	+				-4.8
2,316,248	+				-1.4
2,316,248	+				-4.0
2,316,249	-				+0.2
2,316,249	-				-1.4
2,316,249	-				-3.0
2,316,249	-				-1.4
2,316,249	-				-0.0
2,316,249	-				-1.1
2,316,249	-				-2.2
2,316,272	+				-3.4
2,316,279	+				+1.2
2,316,279	+				-3.3
2,316,279	+				-1.8
2,316,279	+				-1.8
2,316,279	+				-0.8
2,316,279	+				-1.7
2,316,279	+				-2.0
2,316,280	-				-3.0
2,316,280	-				-0.8
2,316,280	-				-0.8
2,316,283	+				-0.2
2,316,283	+				-2.5
2,316,283	+				-2.3
2,316,283	+				-1.2
2,316,284	-				-3.5
2,316,291	+				-3.8
2,316,291	+				-1.0
2,316,302	+				-2.4
2,316,302	+				-3.1
2,316,302	+				-2.5
2,316,302	+				-1.6
2,316,302	+				-3.5
2,316,302	+				-0.3
2,316,302	+				-3.4
2,316,302	+				-3.7
2,316,303	-				-2.7
2,316,307	+				-0.6
2,316,307	+				-1.1
2,316,307	+				-2.6
2,316,307	+				-0.8
2,316,308	-				+0.2
2,316,310	+				-2.1
2,316,310	+				-2.8
2,316,310	+				-1.4
2,316,341	+				-1.5
2,316,658	-		DZA65_RS10950	0.25	-2.1
2,316,693	+		DZA65_RS10950	0.28	-1.8
2,316,694	-		DZA65_RS10950	0.28	+0.2
2,316,762	+		DZA65_RS10950	0.33	-2.0
2,316,800	+		DZA65_RS10950	0.35	+0.2
2,316,801	-		DZA65_RS10950	0.35	-0.8
2,316,801	-		DZA65_RS10950	0.35	-2.8
2,317,006	+		DZA65_RS10950	0.50	-0.7
2,317,221	-		DZA65_RS10950	0.66	-1.1
2,317,262	+		DZA65_RS10950	0.69	-1.5
2,317,263	-		DZA65_RS10950	0.69	-1.6