Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10450

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,214,236	+		DZA65_RS10440	0.60	+0.8
2,214,236	+		DZA65_RS10440	0.60	+0.8
2,214,237	-		DZA65_RS10440	0.61	+0.8
2,214,237	-		DZA65_RS10440	0.61	-0.2
2,214,237	-		DZA65_RS10440	0.61	+0.5
2,214,240	+		DZA65_RS10440	0.61	+2.2
2,214,240	+		DZA65_RS10440	0.61	+0.6
2,214,240	+		DZA65_RS10440	0.61	+0.3
2,214,241	-		DZA65_RS10440	0.61	-0.9
2,214,291	+				+0.3
2,214,291	+		DZA65_RS10440	0.64	-1.3
2,214,291	+		DZA65_RS10440	0.64	-0.2
2,214,291	+				-1.7
2,214,292	-		DZA65_RS10440	0.65	+2.3
2,214,292	-		DZA65_RS10440	0.65	+1.1
2,214,292	-		DZA65_RS10440	0.65	+1.0
2,214,292	-		DZA65_RS10440	0.65	-2.7
2,214,292	-		DZA65_RS10440	0.65	-0.7
2,214,394	-		DZA65_RS10440	0.72	-1.3
2,214,459	-		DZA65_RS10440	0.77	-0.3
2,214,535	+		DZA65_RS10440	0.82	+0.1
2,214,535	+		DZA65_RS10440	0.82	-0.8
2,214,535	+		DZA65_RS10440	0.82	-0.9
2,214,536	-		DZA65_RS10440	0.82	+0.8
2,214,578	+		DZA65_RS10440	0.85	+0.3
2,214,637	+		DZA65_RS10440	0.90	+0.4
2,214,637	+		DZA65_RS10440	0.90	+0.6
2,214,638	-		DZA65_RS10440	0.90	-0.3
2,214,638	-		DZA65_RS10440	0.90	+0.3
2,214,638	-		DZA65_RS10440	0.90	-0.4
2,214,770	+				-2.3
2,214,771	-				-0.5
2,214,771	-				+1.0
2,214,799	+				-0.6
2,214,799	+				+0.3
2,214,799	+				+0.6
2,214,800	-				-0.2
2,214,906	-		DZA65_RS10445	0.47	+0.6
2,214,938	+		DZA65_RS10445	0.59	+0.3
2,214,938	+		DZA65_RS10445	0.59	+0.8
2,214,938	+		DZA65_RS10445	0.59	-0.0
2,214,938	+		DZA65_RS10445	0.59	+1.3
2,214,938	+				+1.8
2,214,938	+		DZA65_RS10445	0.59	+0.2
2,214,938	+		DZA65_RS10445	0.59	-1.3
2,214,938	+		DZA65_RS10445	0.59	-1.7
2,214,939	-		DZA65_RS10445	0.59	+0.4
2,214,939	-		DZA65_RS10445	0.59	-1.3
2,214,939	-		DZA65_RS10445	0.59	+1.4
2,214,939	-		DZA65_RS10445	0.59	+0.3
2,214,939	-		DZA65_RS10445	0.59	-1.6
2,214,939	-		DZA65_RS10445	0.59	-1.7
2,214,939	-		DZA65_RS10445	0.59	-1.1
2,214,939	-		DZA65_RS10445	0.59	-2.1
2,214,939	-		DZA65_RS10445	0.59	-0.9
2,214,939	-		DZA65_RS10445	0.59	+0.8
2,214,991	+		DZA65_RS10445	0.78	+0.6
2,214,992	-		DZA65_RS10445	0.78	+1.4
2,215,002	-		DZA65_RS10445	0.82	-0.7
2,215,002	-		DZA65_RS10445	0.82	+0.6
2,215,002	-		DZA65_RS10445	0.82	+0.8
2,215,078	+				+1.0
2,215,079	-				-0.7
2,215,079	-				+0.7
2,215,127	-				+0.3
2,215,265	+				+0.5
2,215,265	+				-1.6
2,215,265	+				+0.3
2,215,265	+				-1.7
2,215,265	+				-0.7
2,215,265	+				-1.0
2,215,265	+				-0.7
2,215,265	+				+0.4
2,215,265	+				+0.2
2,215,265	+				-0.2
2,215,265	+				+0.3
2,215,265	+				-0.6
2,215,265	+				+0.1
2,215,265	+				-0.7
2,215,265	+				-0.3
2,215,265	+				+1.1
2,215,266	-				-0.7
2,215,266	-				-1.3
2,215,266	-				-2.6
2,215,266	-				+0.4
2,215,266	-				+1.0
2,215,266	-				-1.3
2,215,266	-				+0.3
2,215,266	-				+0.3
2,215,266	-				+0.4
2,215,267	+				+1.2
2,215,267	+				-1.0
2,215,267	+				+2.6
2,215,267	+				-2.4
2,215,267	+				+0.8
2,215,267	+				+0.3
2,215,268	-				+0.5
2,215,268	-				+0.0
2,215,268	-				+0.9
2,215,268	-				-0.3
2,215,298	+				+1.5
2,215,298	+				-0.7
2,215,298	+				+2.1
2,215,299	-				-0.2
2,215,304	+				+2.3
2,215,305	-				-3.0
2,215,305	-				+1.3
2,215,305	-				-1.5
2,215,559	+		DZA65_RS10450	0.13	-0.2
2,215,560	-		DZA65_RS10450	0.13	+0.2
2,215,587	+		DZA65_RS10450	0.13	+0.6
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	+1.7
2,215,662	+		DZA65_RS10450	0.15	-1.1
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	-1.6
2,215,662	+		DZA65_RS10450	0.15	+0.1
2,215,662	+		DZA65_RS10450	0.15	-1.3
2,215,662	+		DZA65_RS10450	0.15	+1.8
2,215,662	+		DZA65_RS10450	0.15	-1.2
2,215,662	+		DZA65_RS10450	0.15	+0.1
2,215,662	+		DZA65_RS10450	0.15	+0.7
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	+0.8
2,215,662	+		DZA65_RS10450	0.15	+0.3
2,215,662	+		DZA65_RS10450	0.15	-0.9
2,215,662	+		DZA65_RS10450	0.15	+1.0
2,215,662	+		DZA65_RS10450	0.15	+0.1
2,215,662	+		DZA65_RS10450	0.15	-0.0
2,215,663	-		DZA65_RS10450	0.15	+0.4
2,215,663	-		DZA65_RS10450	0.15	+0.5
2,215,663	-		DZA65_RS10450	0.15	+0.9
2,215,663	-		DZA65_RS10450	0.15	-1.1
2,215,663	-		DZA65_RS10450	0.15	+0.1
2,215,663	-		DZA65_RS10450	0.15	-3.7
2,215,663	-		DZA65_RS10450	0.15	+1.3
2,215,663	-		DZA65_RS10450	0.15	-2.1
2,215,663	-		DZA65_RS10450	0.15	-0.0
2,215,663	-		DZA65_RS10450	0.15	-0.7
2,215,663	-		DZA65_RS10450	0.15	+0.7
2,215,663	-		DZA65_RS10450	0.15	-0.3
2,215,663	-		DZA65_RS10450	0.15	+1.0
2,215,690	+		DZA65_RS10450	0.16	-0.4
2,215,691	-		DZA65_RS10450	0.16	-1.6
2,215,691	-		DZA65_RS10450	0.16	-0.8
2,215,868	+		DZA65_RS10450	0.21	-1.7
2,215,869	-		DZA65_RS10450	0.21	-2.9
2,215,869	-		DZA65_RS10450	0.21	-0.2
2,215,947	+		DZA65_RS10450	0.23	-0.2
2,215,948	-		DZA65_RS10450	0.23	-1.3
2,216,001	-		DZA65_RS10450	0.24	+0.4
2,216,001	-		DZA65_RS10450	0.24	-0.7
2,216,001	-		DZA65_RS10450	0.24	-2.9
2,216,062	+		DZA65_RS10450	0.26	+0.4
2,216,164	+		DZA65_RS10450	0.28	-0.0
2,216,224	-		DZA65_RS10450	0.30	-0.3
2,216,228	+		DZA65_RS10450	0.30	+0.1
2,216,386	+		DZA65_RS10450	0.34	+0.6
2,216,387	-		DZA65_RS10450	0.34	+1.8
2,216,482	+		DZA65_RS10450	0.37	-0.1
2,216,482	+		DZA65_RS10450	0.37	-0.7
2,216,483	-		DZA65_RS10450	0.37	-2.3
2,216,483	-		DZA65_RS10450	0.37	+0.5
2,216,484	+		DZA65_RS10450	0.37	+1.1
2,216,484	+		DZA65_RS10450	0.37	+1.0
2,216,484	+		DZA65_RS10450	0.37	-0.2
2,216,484	+		DZA65_RS10450	0.37	-1.4
2,216,484	+		DZA65_RS10450	0.37	-0.7
2,216,484	+		DZA65_RS10450	0.37	+0.5
2,216,484	+		DZA65_RS10450	0.37	-0.7
2,216,484	+		DZA65_RS10450	0.37	-0.1
2,216,485	-		DZA65_RS10450	0.37	+0.5
2,216,485	-		DZA65_RS10450	0.37	+0.5
2,216,485	-		DZA65_RS10450	0.37	+0.4
2,216,485	-		DZA65_RS10450	0.37	-0.9
2,216,495	+		DZA65_RS10450	0.37	-0.4
2,216,547	-		DZA65_RS10450	0.38	+0.4
2,216,547	-		DZA65_RS10450	0.38	+0.3
2,216,547	-		DZA65_RS10450	0.38	-0.3
2,216,547	-		DZA65_RS10450	0.38	-1.3
2,216,547	-		DZA65_RS10450	0.38	+0.7
2,216,712	+		DZA65_RS10450	0.42	+1.8
2,216,712	+		DZA65_RS10450	0.42	+0.7
2,216,713	-		DZA65_RS10450	0.42	-1.3
2,216,757	+		DZA65_RS10450	0.44	-0.7
2,216,770	+		DZA65_RS10450	0.44	+1.2
2,216,835	+		DZA65_RS10450	0.46	-0.1
2,216,835	+		DZA65_RS10450	0.46	-2.7
2,216,835	+				+0.8
2,216,866	+		DZA65_RS10450	0.46	-2.2
2,216,917	+		DZA65_RS10450	0.48	+1.7
2,216,959	+		DZA65_RS10450	0.49	-1.7
2,216,960	-		DZA65_RS10450	0.49	-1.3
2,217,186	+		DZA65_RS10450	0.55	+1.2
2,217,186	+		DZA65_RS10450	0.55	+0.3
2,217,187	-		DZA65_RS10450	0.55	+1.3
2,217,187	-		DZA65_RS10450	0.55	+0.1
2,217,357	+		DZA65_RS10450	0.59	+1.1
2,217,414	+		DZA65_RS10450	0.61	-0.1
2,217,510	-		DZA65_RS10450	0.63	-1.3
2,217,510	-		DZA65_RS10450	0.63	-1.2
2,217,511	+		DZA65_RS10450	0.63	-0.6
2,217,511	+		DZA65_RS10450	0.63	+2.1
2,217,512	-		DZA65_RS10450	0.63	+0.7
2,217,512	-		DZA65_RS10450	0.63	+1.0
2,217,512	-		DZA65_RS10450	0.63	-0.6
2,217,512	-		DZA65_RS10450	0.63	+0.5
2,217,512	-		DZA65_RS10450	0.63	-1.3
2,217,567	+		DZA65_RS10450	0.64	-1.7
2,217,567	+				-1.3
2,217,570	+		DZA65_RS10450	0.65	+0.3
2,217,570	+		DZA65_RS10450	0.65	-1.0
2,217,570	+		DZA65_RS10450	0.65	-2.6
2,217,570	+		DZA65_RS10450	0.65	-0.7
2,217,570	+		DZA65_RS10450	0.65	-2.1
2,217,570	+		DZA65_RS10450	0.65	+0.3
2,217,571	-		DZA65_RS10450	0.65	+0.2
2,217,571	-		DZA65_RS10450	0.65	-1.3
2,217,571	-		DZA65_RS10450	0.65	-1.2
2,217,571	-		DZA65_RS10450	0.65	-0.7
2,217,571	-		DZA65_RS10450	0.65	-1.3
2,217,599	+		DZA65_RS10450	0.65	+0.1
2,217,599	+		DZA65_RS10450	0.65	+0.3
2,217,637	+		DZA65_RS10450	0.66	+1.3
2,217,642	+		DZA65_RS10450	0.66	-1.3
2,217,643	-		DZA65_RS10450	0.66	-0.2
2,217,709	-		DZA65_RS10450	0.68	+0.6
2,217,944	+				+1.6
2,217,955	+		DZA65_RS10450	0.75	+0.2
2,217,973	+		DZA65_RS10450	0.75	-1.9
2,217,974	-		DZA65_RS10450	0.75	+0.1
2,218,108	+		DZA65_RS10450	0.78	+0.0
2,218,108	+		DZA65_RS10450	0.78	-0.7
2,218,180	+		DZA65_RS10450	0.80	-0.3
2,218,180	+		DZA65_RS10450	0.80	-1.6
2,218,180	+		DZA65_RS10450	0.80	-1.2
2,218,181	-		DZA65_RS10450	0.80	+0.5
2,218,181	-		DZA65_RS10450	0.80	+0.5
2,218,201	+		DZA65_RS10450	0.81	+1.3
2,218,202	-		DZA65_RS10450	0.81	-2.3
2,218,202	-		DZA65_RS10450	0.81	-2.2
2,218,206	+		DZA65_RS10450	0.81	+1.0
2,218,206	+		DZA65_RS10450	0.81	-1.6
2,218,206	+		DZA65_RS10450	0.81	+1.3
2,218,215	-		DZA65_RS10450	0.81	-0.3
2,218,255	+		DZA65_RS10450	0.82	+0.6
2,218,256	-		DZA65_RS10450	0.82	-0.5
2,218,280	+		DZA65_RS10450	0.83	-0.7
2,218,280	+		DZA65_RS10450	0.83	-0.9
2,218,280	+		DZA65_RS10450	0.83	-1.3
2,218,280	+		DZA65_RS10450	0.83	+0.4
2,218,281	-		DZA65_RS10450	0.83	+0.8
2,218,281	-		DZA65_RS10450	0.83	+0.7
2,218,281	-		DZA65_RS10450	0.83	+2.0
2,218,281	-		DZA65_RS10450	0.83	-0.3
2,218,300	+		DZA65_RS10450	0.83	-0.2
2,218,301	-		DZA65_RS10450	0.83	+1.7
2,218,301	-		DZA65_RS10450	0.83	+1.4
2,218,311	-		DZA65_RS10450	0.84	-0.3
2,218,311	-		DZA65_RS10450	0.84	+0.6
2,218,409	+		DZA65_RS10450	0.86	+0.3
2,218,435	+		DZA65_RS10450	0.87	+0.8
2,218,435	+		DZA65_RS10450	0.87	-1.0
2,218,435	+		DZA65_RS10450	0.87	+0.0
2,218,435	+		DZA65_RS10450	0.87	+0.6
2,218,435	+		DZA65_RS10450	0.87	-1.0
2,218,435	+		DZA65_RS10450	0.87	+0.6
2,218,436	-		DZA65_RS10450	0.87	-2.1
2,218,436	-		DZA65_RS10450	0.87	+0.9
2,218,436	-		DZA65_RS10450	0.87	+0.1
2,218,462	+		DZA65_RS10450	0.88	+0.5
2,218,463	-		DZA65_RS10450	0.88	+1.3
2,218,463	-		DZA65_RS10450	0.88	-0.1
2,218,463	-		DZA65_RS10450	0.88	+0.4
2,218,564	+				+0.8
2,218,565	-				-0.2
2,218,572	+				-0.3
2,218,572	+				+1.1
2,218,572	+				-0.3
2,218,572	+				+0.8
2,218,572	+				-1.7
2,218,572	+				+0.9
2,218,572	+				+0.9
2,218,573	-				-1.7
2,218,573	-				-2.1
2,218,573	-				+0.4
2,218,573	-				-1.2
2,218,573	-				+0.2
2,218,641	+				-0.6
2,218,688	+				-0.5
2,218,688	+				+0.3
2,218,688	+				-0.0
2,218,688	+				+0.4
2,218,699	+				+2.0
2,218,699	+				+0.5
2,218,750	+				-0.1
2,218,750	+				+0.8
2,218,751	-				+3.0
2,218,751	-				-0.2
2,218,765	+				+0.1
2,218,838	+				+1.8
2,218,838	+				-0.2
2,218,839	-				+1.1
2,218,839	-				-1.7
2,218,867	+				+0.3
2,219,026	+				-2.6
2,219,026	+				-0.3
2,219,026	+				-2.7
2,219,026	+				-0.5
2,219,026	+				+0.4
2,219,026	+				-1.0
2,219,026	+				-1.3
2,219,027	-				-0.9
2,219,027	-				-0.7
2,219,027	-				-1.2
2,219,027	-				+0.3